Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0018548

Physical Location & Seq

Genomic Coordinates Reverse (-)

3179076 .. 3190382

Gene Structure 11307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG018300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGCACAGAGAAGCCATGGAAGAGGGGCTACTAGCTCTATCAGCGTCAAAATCCAATATCAATGGAGCTTCAGGTGTTGTGGTTCTGAGCACATTGGTCGCTCTCTGTGGTTCCTTCAGCTATGGATGTGCTGATACTCATCATCTGCTAGATCAGGATTTGTGGAAGACTTGGGCCTTACTGTTGCAGCATATACTTAATGGTCTAAACCTCTCTGCATATATTACTAGTGAGATCTATTATCTCTACAGTTTGAAGCAATTGCATATTGGTTCCAATAGTGTTGGTGGTGAAATTCCATATGTCTTACCCCACAATGCGACTCACATGAAAAATGTCGTGAGCTACAAGAGAGGCGCAACAAGAATAAGTAACCTCATAGAATGTCCCGTAAGGGATATGCAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

136

Amino Acids

14.96

Weight (kDa)

6.63

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018548)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0381301
rosa_roxburghii	Rroxscaffold_4G00321050
rosa_samantha	Rh1AG018300 Rh1CG068000 Rh5AG340500 Rh6AG185800 Rh6BG055900 Rh7CG323100 Rh7CG467900 Rh7DG324000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	394
AcsI	RAATTY	1 cut(s)	294
AcuI	CTGAAG	2 cut(s)	54, 100
AgsI	TTSAA	1 cut(s)	256
AhlI	ACTAGT	1 cut(s)	227
AluBI	AGCT	4 cut(s)	35, 68, 120, 345
AluI	AGCT	4 cut(s)	35, 68, 120, 345
Alw21I	GWGCWC	1 cut(s)	92
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	1 cut(s)	187
ApoI	RAATTY	1 cut(s)	294
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	302
BarI	GAAGNNNNNNTAC	2 cut(s)	12, 44
BbsI	GAAGAC	1 cut(s)	173
Bbv12I	GWGCWC	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	199
BcgI	CGANNNNNNTGC	2 cut(s)	79, 113
BcuI	ACTAGT	1 cut(s)	227
BfaI	CTAG	3 cut(s)	32, 149, 228
BfmI	CTRYAG	1 cut(s)	247
BfuAI	ACCTGC	1 cut(s)	394
BglII	AGATCT	1 cut(s)	234
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	2 cut(s)	112, 274
BpiI	GAAGAC	1 cut(s)	173
BsaBI	GATNNNNATC	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	15
Bse8I	GATNNNNATC	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	131
BseJI	GATNNNNATC	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	199
BshFI	GGCC	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	372
BsnI	GGCC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp143I	GATC	2 cut(s)	151, 234
Bsp19I	CCATGG	1 cut(s)	15
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	112, 274
BspMI	ACCTGC	1 cut(s)	394
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	2 cut(s)	151, 234
BssT1I	CCWWGG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	183, 251
Bst6I	CTCTTC	1 cut(s)	15
BstDEI	CTNAG	1 cut(s)	86
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	2 cut(s)	154, 237
BstMBI	GATC	2 cut(s)	151, 234
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstSFI	CTRYAG	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	199
BstV2I	GAAGAC	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	176
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	131
BveI	ACCTGC	1 cut(s)	394
CfoI	GCGC	1 cut(s)	359
Cfr13I	GGNCC	1 cut(s)	174
CseI	GACGC	1 cut(s)	33
CviAII	CATG	2 cut(s)	16, 328
CviJI	RGCY	7 cut(s)	14, 28, 35, 68, 120, 176, 345
CviKI_1	RGCY	7 cut(s)	14, 28, 35, 68, 120, 176, 345
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	2 cut(s)	153, 236
DpnII	GATC	2 cut(s)	151, 234
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	15
Eco57I	CTGAAG	2 cut(s)	54, 100
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	2 cut(s)	19, 331
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	2 cut(s)	15, 327
FauNDI	CATATG	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	188
FokI	GGATG	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	188
FspBI	CTAG	3 cut(s)	32, 149, 228
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	176
HgaI	GACGC	1 cut(s)	33
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	2 cut(s)	19, 331
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HinfI	GANTC	1 cut(s)	322
HphI	GGTGA	1 cut(s)	302
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	2 cut(s)	155, 340
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	2 cut(s)	183, 251
HpyCH4V	TGCA	5 cut(s)	4, 187, 218, 265, 403
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	1 cut(s)	86
Hsp92II	CATG	2 cut(s)	19, 331
HspAI	GCGC	1 cut(s)	357
Kzo9I	GATC	2 cut(s)	151, 234
LmnI	GCTCC	1 cut(s)	65
LpnPI	CCDG	3 cut(s)	57, 140, 389
Lsp1109I	GCAGC	1 cut(s)	199
MaeI	CTAG	3 cut(s)	32, 149, 228
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	2 cut(s)	153, 236
MboI	GATC	2 cut(s)	151, 234
MboII	GAAGA	2 cut(s)	32, 178
MfeI	CAATTG	1 cut(s)	260
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	2 cut(s)	260, 294
MlyI	GAGTC	1 cut(s)	316
MnlI	CCTC	4 cut(s)	16, 221, 347, 386
MseI	TTAA	1 cut(s)	198
MunI	CAATTG	1 cut(s)	260
MwoI	GCNNNNNNNGC	1 cut(s)	41
NcoI	CCATGG	1 cut(s)	15
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	2 cut(s)	151, 234
NlaIII	CATG	2 cut(s)	19, 331
NlaIV	GGNNCC	2 cut(s)	112, 274
PkrI	GCNGC	1 cut(s)	189
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	112, 274
PspPI	GGNCC	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	2 cut(s)	151, 234
Sau96I	GGNCC	1 cut(s)	174
SchI	GAGTC	1 cut(s)	316
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	8 cut(s)	37, 70, 76, 122, 213, 347, 378, 408
SfcI	CTRYAG	1 cut(s)	247
SpeI	ACTAGT	1 cut(s)	227
Sse9I	AATT	2 cut(s)	260, 294
SspMI	CTAG	3 cut(s)	32, 149, 228
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	2 cut(s)	183, 251
TasI	AATT	2 cut(s)	260, 294
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TseI	GCWGC	1 cut(s)	187
TspDTI	ATGAA	1 cut(s)	344
XapI	RAATTY	1 cut(s)	294
XspI	CTAG	3 cut(s)	32, 149, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.