Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0018548

Physical Location & Seq

Genomic Coordinates Reverse (-)

55279194 .. 55280556

Gene Structure 1363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG340500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCACACCACCTGTTTGATGAAAGTTCCAGTCGTAGCTCTTCGAGATATTTACAAGACCCTGAACCAACTGCCACAACTGAGGCACAGGAGCATAATTGTGTCCCTTCTTTGGAGACTAAGAAACTCCCCTCTTGATCATTCATTATATGATTTGTCACCCCAACTTGTCTCACTTGAACCAAAAGAAGTAGTTGTTTCGCATAACACAGTCCAGTTGGAAAAAGTGAAGTCTTTGAGGGATGATGAAAAGACGGGAAAATGCAAACGTCAGAATGATGAATTTGATTTACAGAGCATGAAAATGTTGAAAACCCTAGAAACATCTGAAACCATTAAATGGGAAGCTGAATCGTATGATGATTTTGATGATGACCCTGTAAATGCTGAAGGCGCTAACCAGGGTCATGCAAGTTCATTAAGTGCAAGAAAAGTTTCCCAATTCGTTGCTGCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sas10 Sas10_Utp3

Protein Analysis

152

Amino Acids

17.35

Weight (kDa)

6.2

Isoelectric Point (pI)

54.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018548)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0381301
rosa_roxburghii	Rroxscaffold_4G00321050
rosa_samantha	Rh1AG018300 Rh1CG068000 Rh5AG340500 Rh6AG185800 Rh6BG055900 Rh7CG323100 Rh7CG467900 Rh7DG324000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	281
AcuI	CTGAAG	1 cut(s)	408
AfiI	CCNNNNNNNGG	2 cut(s)	111, 339
AgsI	TTSAA	2 cut(s)	179, 310
AjnI	CCWGG	1 cut(s)	399
AluBI	AGCT	2 cut(s)	38, 347
AluI	AGCT	2 cut(s)	38, 347
Alw26I	GTCTC	2 cut(s)	109, 175
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	1 cut(s)	281
Asp700I	GAANNNNTTC	1 cut(s)	433
AspLEI	GCGC	1 cut(s)	395
AsuHPI	GGTGA	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	436
BciT130I	CCWGG	1 cut(s)	401
BclI	TGATCA	1 cut(s)	136
BcoDI	GTCTC	2 cut(s)	109, 175
BfaI	CTAG	1 cut(s)	317
BfoI	RGCGCY	1 cut(s)	396
BisI	GCNGC	1 cut(s)	450
BlsI	GCNGC	1 cut(s)	451
Bme1390I	CCNGG	1 cut(s)	401
BmrFI	CCNGG	1 cut(s)	401
BsaJI	CCNNGG	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 339
Bse1I	ACTGG	2 cut(s)	29, 214
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	1 cut(s)	400
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	2 cut(s)	111, 339
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	2 cut(s)	29, 214
BseXI	GCAGC	1 cut(s)	436
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	2 cut(s)	111, 339
BsmAI	GTCTC	2 cut(s)	109, 175
BsmFI	GGGAC	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	136
BspCNI	CTCAG	1 cut(s)	72
BspQI	GCTCTTC	1 cut(s)	45
BsrI	ACTGG	2 cut(s)	29, 214
BssECI	CCNNGG	1 cut(s)	400
BssMI	GATC	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	1 cut(s)	211
Bst6I	CTCTTC	1 cut(s)	45
BstDEI	CTNAG	2 cut(s)	80, 119
BstF5I	GGATG	1 cut(s)	247
BstH2I	RGCGCY	1 cut(s)	396
BstHHI	GCGC	1 cut(s)	395
BstKTI	GATC	1 cut(s)	139
BstMAI	GTCTC	2 cut(s)	109, 175
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstNI	CCWGG	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	399
BstV1I	GCAGC	1 cut(s)	436
BtsCI	GGATG	1 cut(s)	247
CfoI	GCGC	1 cut(s)	395
CviAII	CATG	2 cut(s)	298, 407
CviJI	RGCY	2 cut(s)	38, 347
CviKI_1	RGCY	2 cut(s)	38, 347
DdeI	CTNAG	2 cut(s)	80, 119
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	399
FaeI	CATG	2 cut(s)	301, 410
FaiI	YATR	7 cut(s)	95, 148, 150, 204, 299, 357, 408
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	2 cut(s)	297, 406
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	450
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	450
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	1 cut(s)	394
GluI	GCNGC	1 cut(s)	450
HaeII	RGCGCY	1 cut(s)	396
HhaI	GCGC	1 cut(s)	395
Hin1II	CATG	2 cut(s)	301, 410
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HinfI	GANTC	1 cut(s)	350
HphI	GGTGA	1 cut(s)	150
Hpy188I	TCNGA	2 cut(s)	273, 328
Hpy188III	TCNNGA	2 cut(s)	44, 134
HpyAV	CCTTC	2 cut(s)	116, 383
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	4 cut(s)	4, 264, 410, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpyF3I	CTNAG	2 cut(s)	80, 119
HpySE526I	ACGT	1 cut(s)	268
Hsp92II	CATG	2 cut(s)	301, 410
HspAI	GCGC	1 cut(s)	393
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	1 cut(s)	136
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	1 cut(s)	90
LpnPI	CCDG	8 cut(s)	25, 42, 73, 74, 227, 386, 390, 413
Lsp1109I	GCAGC	1 cut(s)	436
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	1 cut(s)	268
MaeIII	GTNAC	1 cut(s)	156
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	1 cut(s)	32
MluCI	AATT	4 cut(s)	96, 281, 440, 454
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	3 cut(s)	75, 141, 231
MroXI	GAANNNNTTC	1 cut(s)	433
MseI	TTAA	2 cut(s)	336, 419
MslI	CAYNNNNRTG	2 cut(s)	98, 302
MspR9I	CCNGG	1 cut(s)	401
MvaI	CCWGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	1 cut(s)	392
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	2 cut(s)	301, 410
NmuCI	GTSAC	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	350
PflMI	CCANNNNNTGG	1 cut(s)	339
PkrI	GCNGC	1 cut(s)	451
Psp6I	CCWGG	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	399
RseI	CAYNNNNRTG	2 cut(s)	98, 302
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	336, 419
SatI	GCNGC	1 cut(s)	450
Sau3AI	GATC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	401
SetI	ASST	4 cut(s)	14, 40, 271, 349
SmiMI	CAYNNNNRTG	2 cut(s)	98, 302
Sse9I	AATT	4 cut(s)	96, 281, 440, 454
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	1 cut(s)	399
TaaI	ACNGT	1 cut(s)	211
TaiI	ACGT	1 cut(s)	271
TaqI	TCGA	1 cut(s)	43
TasI	AATT	4 cut(s)	96, 281, 440, 454
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	2 cut(s)	336, 419
Tru9I	TTAA	2 cut(s)	336, 419
TseFI	GTSAC	1 cut(s)	156
TseI	GCWGC	1 cut(s)	449
Tsp45I	GTSAC	1 cut(s)	156
TspDTI	ATGAA	6 cut(s)	35, 132, 261, 294, 314, 405
Van91I	CCANNNNNTGG	1 cut(s)	339
XapI	RAATTY	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	433
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.