Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0018548

Physical Location & Seq

Genomic Coordinates Forward (+)

14000979 .. 14011796

Gene Structure 10818 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG068000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAAGAGGGGCTACTAGCTCTATCAGGGTCAAAATCCAATATCAATGGAGCTTCAGGTGTTGTGGTTCTGAGCACATTGGTCGCTCTCTGTGGTTCCTTCAGCTATGGATGTGCTTTTGAAGCAACTGTAAGTGGTTCTACTGTTTTTTCAACTTACTATAGTTGTGTAAGCATGCCTGTTGCTAAATCTCTTCTTCTTTCTTCTTTAAGGCATATTGGTTCCAATAGCATTGGTGGTGAAATTTCATGTCTTACCCCACAATGCGACTCACATGCTCACCTATCAAGCAGGCACAACAACTTTGATGTCCAAAAATACATATGGCGATCCTTGGAGGAAGATTTCAAGACATTGGTTGGCATAAGATGGGTTCACAGTTCAAGGGTAAGATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

132

Amino Acids

14.27

Weight (kDa)

7.68

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mlo	PF03094	93 - 125	3.2e-06	Mlo family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018548)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0381301
rosa_roxburghii	Rroxscaffold_4G00321050
rosa_samantha	Rh1AG018300 Rh1CG068000 Rh5AG340500 Rh6AG185800 Rh6BG055900 Rh7CG323100 Rh7CG467900 Rh7DG324000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	324
AcsI	RAATTY	1 cut(s)	243
AcuI	CTGAAG	2 cut(s)	39, 85
AgsI	TTSAA	4 cut(s)	122, 153, 349, 384
AluBI	AGCT	3 cut(s)	20, 53, 105
AluI	AGCT	3 cut(s)	20, 53, 105
Alw21I	GWGCWC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	324
ApoI	RAATTY	1 cut(s)	243
AsuHPI	GGTGA	2 cut(s)	251, 272
BarI	GAAGNNNNNNTAC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	77
BccI	CCATC	1 cut(s)	363
BcgI	CGANNNNNNTGC	4 cut(s)	64, 98, 257, 291
BfaI	CTAG	2 cut(s)	17, 397
BfmI	CTRYAG	1 cut(s)	160
BmiI	GGNNCC	2 cut(s)	97, 223
BsaJI	CCNNGG	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	1 cut(s)	329
BspCNI	CTCAG	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	97, 223
BspPI	GGATC	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	1 cut(s)	329
BssT1I	CCWWGG	1 cut(s)	333
Bst4CI	ACNGT	3 cut(s)	130, 145, 380
Bst6I	CTCTTC	1 cut(s)	198
BstC8I	GCNNGC	2 cut(s)	176, 293
BstDEI	CTNAG	1 cut(s)	71
BstF5I	GGATG	1 cut(s)	116
BstKTI	GATC	1 cut(s)	332
BstMBI	GATC	1 cut(s)	329
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNSI	RCATGY	2 cut(s)	178, 278
BstSFI	CTRYAG	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	116
Cac8I	GCNNGC	2 cut(s)	176, 293
CviAII	CATG	3 cut(s)	175, 249, 275
CviJI	RGCY	4 cut(s)	13, 20, 53, 105
CviKI_1	RGCY	4 cut(s)	13, 20, 53, 105
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	1 cut(s)	331
DpnII	GATC	1 cut(s)	329
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	333
Eco57I	CTGAAG	2 cut(s)	39, 85
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	3 cut(s)	178, 252, 278
FaiI	YATR	9 cut(s)	108, 162, 176, 216, 250, 276, 323, 325, 365
FatI	CATG	3 cut(s)	174, 248, 274
FauNDI	CATATG	1 cut(s)	323
FokI	GGATG	1 cut(s)	123
FspBI	CTAG	2 cut(s)	17, 397
Hin1II	CATG	3 cut(s)	178, 252, 278
HinfI	GANTC	1 cut(s)	269
HphI	GGTGA	2 cut(s)	251, 272
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	1 cut(s)	349
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	3 cut(s)	130, 145, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	1 cut(s)	71
Hsp92II	CATG	3 cut(s)	178, 252, 278
Kzo9I	GATC	1 cut(s)	329
LmnI	GCTCC	1 cut(s)	50
LpnPI	CCDG	4 cut(s)	12, 42, 192, 277
MaeI	CTAG	2 cut(s)	17, 397
MalI	GATC	1 cut(s)	331
MboI	GATC	1 cut(s)	329
MboII	GAAGA	5 cut(s)	17, 185, 188, 195, 353
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	263
MnlI	CCTC	1 cut(s)	331
MseI	TTAA	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	122
NdeI	CATATG	1 cut(s)	323
NdeII	GATC	1 cut(s)	329
NlaIII	CATG	3 cut(s)	178, 252, 278
NlaIV	GGNNCC	2 cut(s)	97, 223
NspI	RCATGY	2 cut(s)	178, 278
PaeI	GCATGC	1 cut(s)	178
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
PspN4I	GGNNCC	2 cut(s)	97, 223
SaqAI	TTAA	1 cut(s)	209
Sau3AI	GATC	1 cut(s)	329
SchI	GAGTC	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	5 cut(s)	22, 55, 61, 107, 285
SfcI	CTRYAG	1 cut(s)	160
SphI	GCATGC	1 cut(s)	178
Sse9I	AATT	1 cut(s)	243
SspMI	CTAG	2 cut(s)	17, 397
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	3 cut(s)	130, 145, 380
TasI	AATT	1 cut(s)	243
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	237
XapI	RAATTY	1 cut(s)	243
XceI	RCATGY	2 cut(s)	178, 278
XspI	CTAG	2 cut(s)	17, 397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.