Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0018548

Physical Location & Seq

Genomic Coordinates Forward (+)

39022078 .. 39023624

Gene Structure 1547 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG324000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAAAAGGTGAAGTCTCTGAAGGATGATGAAAAGGTGGGAAACGTAAACGTCAGATCTCTTACTACGTGGCAGAGTGATGAAGTTGGTTCACAGAGCATGAAAATGTTGAAAGTAAGAGCTGCCCTTGAGGAAAAATTGAAGCAGAAGGGTGTTTTCAATTCCATCACTCCAAGAACTGATAGACCCCAGAAACATCTGAAGCCATTAAATGGGAAGCTTGAATCTAAAGTTTCCCAACTTGTTGCTGCTAATCGACATAAGTCAAAGATTGTTTCAGGCGATGATGACTTACCTCAGAGAGATGATATTGGGGAAAGACGGAGAAAACATGAGCTCCGAGTACTGGCAGGAGCTGGAATCAGGTCCGAGGATGATGCTGGAGAAAATGACACTATTTCAGATGATGGAGACATTGAGATGGAGGATAGTGAAGCTGGAGATTCAGAAGATGACTTTTACGAACAAGCAAAACAAAACCGAGCTGCAAAACTCGCTGCCAAAGCTGACATCCATTCTAGGTCCTCCTCAGTTCCATCTTTACCTGAAACTGTGGATGGCAAACGTCATATTACTTATCAGGTAAATACAAGATGCAAGATGCCACCGAGCTCATTTCGACCACCGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sas10 Sas10_Utp3

Protein Analysis

210

Amino Acids

23.42

Weight (kDa)

6.98

Isoelectric Point (pI)

57.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018548)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0381301
rosa_roxburghii	Rroxscaffold_4G00321050
rosa_samantha	Rh1AG018300 Rh1CG068000 Rh5AG340500 Rh6AG185800 Rh6BG055900 Rh7CG323100 Rh7CG467900 Rh7DG324000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	212
AcuI	CTGAAG	2 cut(s)	41, 221
AfaI	GTAC	1 cut(s)	345
AfiI	CCNNNNNNNGG	2 cut(s)	212, 346
AgeI	ACCGGT	1 cut(s)	625
AgsI	TTSAA	4 cut(s)	112, 142, 160, 224
AluBI	AGCT	8 cut(s)	122, 220, 337, 356, 437, 485, 506, 612
AluI	AGCT	8 cut(s)	122, 220, 337, 356, 437, 485, 506, 612
Alw21I	GWGCWC	2 cut(s)	339, 614
Alw26I	GTCTC	2 cut(s)	21, 405
AlwNI	CAGNNNCTG	1 cut(s)	356
ApeKI	GCWGC	4 cut(s)	122, 248, 485, 497
AsiGI	ACCGGT	1 cut(s)	625
AspS9I	GGNCC	2 cut(s)	366, 522
AsuHPI	GGTGA	1 cut(s)	22
AvaII	GGWCC	2 cut(s)	366, 522
BanII	GRGCYC	2 cut(s)	339, 614
Bbv12I	GWGCWC	2 cut(s)	339, 614
BbvI	GCAGC	4 cut(s)	109, 235, 472, 484
BccI	CCATC	5 cut(s)	173, 401, 415, 544, 551
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BcoDI	GTCTC	2 cut(s)	21, 405
BfaI	CTAG	1 cut(s)	519
BglII	AGATCT	1 cut(s)	56
BisI	GCNGC	4 cut(s)	123, 249, 486, 498
BlsI	GCNGC	4 cut(s)	124, 250, 487, 499
BmcAI	AGTACT	1 cut(s)	345
Bme18I	GGWCC	2 cut(s)	366, 522
BmgT120I	GGNCC	2 cut(s)	366, 522
BmsI	GCATC	3 cut(s)	367, 584, 591
BoxI	GACNNNNGTC	1 cut(s)	262
BpmI	CTGGAG	2 cut(s)	402, 459
BpuEI	CTTGAG	1 cut(s)	149
BsaAI	YACGTR	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	369
BsaWI	WCCGGW	1 cut(s)	625
BsaXI	ACNNNNNCTCC	2 cut(s)	321, 351
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 346
Bse118I	RCCGGY	1 cut(s)	625
Bse1I	ACTGG	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	4 cut(s)	31, 379, 510, 562
BseLI	CCNNNNNNNGG	2 cut(s)	212, 346
BseMII	CTCAG	2 cut(s)	311, 543
BseNI	ACTGG	1 cut(s)	351
BseRI	GAGGAG	1 cut(s)	517
BseXI	GCAGC	4 cut(s)	109, 235, 472, 484
BshTI	ACCGGT	1 cut(s)	625
BsiHKAI	GWGCWC	2 cut(s)	339, 614
BsiSI	CCGG	1 cut(s)	626
BslI	CCNNNNNNNGG	2 cut(s)	212, 346
BsmAI	GTCTC	2 cut(s)	21, 405
Bsp1286I	GDGCHC	2 cut(s)	339, 614
Bsp143I	GATC	1 cut(s)	56
BspCNI	CTCAG	2 cut(s)	310, 542
BsrFI	RCCGGY	1 cut(s)	625
BsrI	ACTGG	1 cut(s)	351
BssAI	RCCGGY	1 cut(s)	625
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	553
BstBAI	YACGTR	1 cut(s)	69
BstDEI	CTNAG	2 cut(s)	297, 529
BstF5I	GGATG	4 cut(s)	31, 379, 510, 562
BstKTI	GATC	1 cut(s)	59
BstMAI	GTCTC	2 cut(s)	21, 405
BstMBI	GATC	1 cut(s)	56
BstMWI	GCNNNNNNNGC	2 cut(s)	494, 503
BstPAI	GACNNNNGTC	1 cut(s)	262
BstV1I	GCAGC	4 cut(s)	109, 235, 472, 484
BstX2I	RGATCY	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	56
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	4 cut(s)	31, 379, 510, 562
CaiI	CAGNNNCTG	1 cut(s)	356
Cfr10I	RCCGGY	1 cut(s)	625
Cfr13I	GGNCC	2 cut(s)	366, 522
Csp6I	GTAC	1 cut(s)	344
CspAI	ACCGGT	1 cut(s)	625
CviAII	CATG	2 cut(s)	100, 332
CviJI	RGCY	9 cut(s)	122, 205, 220, 337, 356, 437, 485, 506, 612
CviKI_1	RGCY	9 cut(s)	122, 205, 220, 337, 356, 437, 485, 506, 612
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	2 cut(s)	297, 529
DpnI	GATC	1 cut(s)	58
DpnII	GATC	1 cut(s)	56
Ecl136II	GAGCTC	2 cut(s)	337, 612
Eco24I	GRGCYC	2 cut(s)	339, 614
Eco47I	GGWCC	2 cut(s)	366, 522
Eco53kI	GAGCTC	2 cut(s)	337, 612
Eco57I	CTGAAG	2 cut(s)	41, 221
EcoICRI	GAGCTC	2 cut(s)	337, 612
EcoO109I	RGGNCCY	1 cut(s)	522
EcoT38I	GRGCYC	2 cut(s)	339, 614
FaeI	CATG	2 cut(s)	103, 335
FaiI	YATR	4 cut(s)	101, 261, 333, 570
FatI	CATG	2 cut(s)	99, 331
Fnu4HI	GCNGC	4 cut(s)	123, 249, 486, 498
FokI	GGATG	4 cut(s)	38, 386, 497, 569
FriOI	GRGCYC	2 cut(s)	339, 614
Fsp4HI	GCNGC	4 cut(s)	123, 249, 486, 498
FspBI	CTAG	1 cut(s)	519
GluI	GCNGC	4 cut(s)	123, 249, 486, 498
GsuI	CTGGAG	2 cut(s)	402, 459
HapII	CCGG	1 cut(s)	626
Hin1II	CATG	2 cut(s)	103, 335
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	3 cut(s)	224, 360, 443
HpaII	CCGG	1 cut(s)	626
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	2 cut(s)	49, 92
Hpy188I	TCNGA	8 cut(s)	21, 56, 201, 300, 341, 370, 403, 448
Hpy8I	GTNNAC	2 cut(s)	49, 92
HpyAV	CCTTC	2 cut(s)	16, 142
HpyCH4III	ACNGT	1 cut(s)	553
HpyCH4IV	ACGT	4 cut(s)	45, 51, 68, 565
HpyCH4V	TGCA	2 cut(s)	488, 597
HpyF10VI	GCNNNNNNNGC	2 cut(s)	494, 503
HpyF3I	CTNAG	2 cut(s)	297, 529
HpySE526I	ACGT	4 cut(s)	45, 51, 68, 565
Hsp92II	CATG	2 cut(s)	103, 335
Kzo9I	GATC	1 cut(s)	56
LmnI	GCTCC	2 cut(s)	342, 353
Lsp1109I	GCAGC	4 cut(s)	109, 235, 472, 484
LweI	GCATC	3 cut(s)	367, 584, 591
MaeI	CTAG	1 cut(s)	519
MaeII	ACGT	4 cut(s)	45, 51, 68, 565
MalI	GATC	1 cut(s)	58
MboI	GATC	1 cut(s)	56
MboII	GAAGA	1 cut(s)	461
MflI	RGATCY	1 cut(s)	56
MhlI	GDGCHC	2 cut(s)	339, 614
MluCI	AATT	2 cut(s)	137, 160
MnlI	CCTC	6 cut(s)	124, 306, 364, 418, 535, 538
MseI	TTAA	1 cut(s)	209
MslI	CAYNNNNRTG	2 cut(s)	104, 419
MspI	CCGG	1 cut(s)	626
MwoI	GCNNNNNNNGC	2 cut(s)	494, 503
NdeII	GATC	1 cut(s)	56
NlaIII	CATG	2 cut(s)	103, 335
PfeI	GAWTC	3 cut(s)	224, 360, 443
PflMI	CCANNNNNTGG	1 cut(s)	212
PinAI	ACCGGT	1 cut(s)	625
PkrI	GCNGC	4 cut(s)	124, 250, 487, 499
Ppu21I	YACGTR	1 cut(s)	69
PpuMI	RGGWCCY	1 cut(s)	522
PshAI	GACNNNNGTC	1 cut(s)	262
Psp124BI	GAGCTC	2 cut(s)	339, 614
Psp5II	RGGWCCY	1 cut(s)	522
PspPI	GGNCC	2 cut(s)	366, 522
PspPPI	RGGWCCY	1 cut(s)	522
PstNI	CAGNNNCTG	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	56
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
RseI	CAYNNNNRTG	2 cut(s)	104, 419
SacI	GAGCTC	2 cut(s)	339, 614
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	4 cut(s)	123, 249, 486, 498
Sau3AI	GATC	1 cut(s)	56
Sau96I	GGNCC	2 cut(s)	366, 522
ScaI	AGTACT	1 cut(s)	345
SduI	GDGCHC	2 cut(s)	339, 614
SfaNI	GCATC	3 cut(s)	367, 584, 591
SgrAI	CRCCGGYG	1 cut(s)	625
SinI	GGWCC	2 cut(s)	366, 522
SmiMI	CAYNNNNRTG	2 cut(s)	104, 419
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	2 cut(s)	137, 160
SspMI	CTAG	1 cut(s)	519
SstI	GAGCTC	2 cut(s)	339, 614
TaaI	ACNGT	1 cut(s)	553
TaiI	ACGT	4 cut(s)	48, 54, 71, 568
TaqI	TCGA	2 cut(s)	256, 619
TasI	AATT	2 cut(s)	137, 160
TatI	WGTACW	1 cut(s)	343
TfiI	GAWTC	3 cut(s)	224, 360, 443
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TseI	GCWGC	4 cut(s)	122, 248, 485, 497
TspDTI	ATGAA	3 cut(s)	45, 96, 116
TspGWI	ACGGA	1 cut(s)	337
Van91I	CCANNNNNTGG	1 cut(s)	212
VpaK11BI	GGWCC	2 cut(s)	366, 522
XspI	CTAG	1 cut(s)	519
ZrmI	AGTACT	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.