Something about silencing protein
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0381301 |
| rosa_roxburghii | Rroxscaffold_4G00321050 |
| rosa_samantha | Rh1AG018300 Rh1CG068000 Rh5AG340500 Rh6AG185800 Rh6BG055900 Rh7CG323100 Rh7CG467900 Rh7DG324000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 29 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 341 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AcuI | CTGAAG | 2 cut(s) | 126, 172 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 341 |
| AgsI | TTSAA | 3 cut(s) | 241, 271, 289 |
| AluBI | AGCT | 5 cut(s) | 107, 140, 192, 251, 349 |
| AluI | AGCT | 5 cut(s) | 107, 140, 192, 251, 349 |
| Alw21I | GWGCWC | 1 cut(s) | 164 |
| ApeKI | GCWGC | 1 cut(s) | 251 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 84, 116 |
| Bbv12I | GWGCWC | 1 cut(s) | 164 |
| BbvI | GCAGC | 1 cut(s) | 238 |
| BccI | CCATC | 1 cut(s) | 302 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 151, 185 |
| BfaI | CTAG | 1 cut(s) | 104 |
| BisI | GCNGC | 1 cut(s) | 252 |
| BlsI | GCNGC | 1 cut(s) | 253 |
| BmiI | GGNNCC | 1 cut(s) | 184 |
| BmsI | GCATC | 1 cut(s) | 63 |
| BpuEI | CTTGAG | 1 cut(s) | 278 |
| BsaJI | CCNNGG | 1 cut(s) | 87 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 341 |
| BseDI | CCNNGG | 1 cut(s) | 87 |
| BseGI | GGATG | 1 cut(s) | 203 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 341 |
| BseMII | CTCAG | 1 cut(s) | 149 |
| BseXI | GCAGC | 1 cut(s) | 238 |
| BsiHKAI | GWGCWC | 1 cut(s) | 164 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 341 |
| Bsp1286I | GDGCHC | 1 cut(s) | 164 |
| Bsp19I | CCATGG | 1 cut(s) | 87 |
| BspCNI | CTCAG | 1 cut(s) | 150 |
| BspLI | GGNNCC | 1 cut(s) | 184 |
| BssECI | CCNNGG | 1 cut(s) | 87 |
| BssT1I | CCWWGG | 1 cut(s) | 87 |
| Bst6I | CTCTTC | 2 cut(s) | 57, 87 |
| BstDEI | CTNAG | 1 cut(s) | 158 |
| BstDSI | CCRYGG | 1 cut(s) | 87 |
| BstF5I | GGATG | 1 cut(s) | 203 |
| BstV1I | GCAGC | 1 cut(s) | 238 |
| BtgI | CCRYGG | 1 cut(s) | 87 |
| BtsCI | GGATG | 1 cut(s) | 203 |
| CviAII | CATG | 2 cut(s) | 88, 229 |
| CviJI | RGCY | 7 cut(s) | 86, 100, 107, 140, 192, 251, 349 |
| CviKI_1 | RGCY | 7 cut(s) | 86, 100, 107, 140, 192, 251, 349 |
| DdeI | CTNAG | 1 cut(s) | 158 |
| Eam1104I | CTCTTC | 2 cut(s) | 57, 87 |
| EarI | CTCTTC | 2 cut(s) | 57, 87 |
| Eco130I | CCWWGG | 1 cut(s) | 87 |
| Eco57I | CTGAAG | 2 cut(s) | 126, 172 |
| EcoT14I | CCWWGG | 1 cut(s) | 87 |
| ErhI | CCWWGG | 1 cut(s) | 87 |
| FaeI | CATG | 2 cut(s) | 91, 232 |
| FaiI | YATR | 6 cut(s) | 16, 29, 89, 195, 230, 359 |
| FatI | CATG | 2 cut(s) | 87, 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 252 |
| FokI | GGATG | 1 cut(s) | 210 |
| Fsp4HI | GCNGC | 1 cut(s) | 252 |
| FspBI | CTAG | 1 cut(s) | 104 |
| GluI | GCNGC | 1 cut(s) | 252 |
| Hin1II | CATG | 2 cut(s) | 91, 232 |
| HinfI | GANTC | 1 cut(s) | 352 |
| Hpy188I | TCNGA | 3 cut(s) | 72, 159, 330 |
| HpyAV | CCTTC | 3 cut(s) | 77, 196, 271 |
| HpyCH4V | TGCA | 2 cut(s) | 42, 76 |
| HpyF3I | CTNAG | 1 cut(s) | 158 |
| Hsp92II | CATG | 2 cut(s) | 91, 232 |
| LpnPI | CCDG | 3 cut(s) | 99, 129, 332 |
| Lsp1109I | GCAGC | 1 cut(s) | 238 |
| LweI | GCATC | 1 cut(s) | 63 |
| MaeI | CTAG | 1 cut(s) | 104 |
| MboII | GAAGA | 2 cut(s) | 44, 104 |
| MhlI | GDGCHC | 1 cut(s) | 164 |
| MluCI | AATT | 3 cut(s) | 212, 266, 289 |
| MnlI | CCTC | 2 cut(s) | 88, 253 |
| MseI | TTAA | 1 cut(s) | 338 |
| MslI | CAYNNNNRTG | 1 cut(s) | 233 |
| NcoI | CCATGG | 1 cut(s) | 87 |
| NlaIII | CATG | 2 cut(s) | 91, 232 |
| NlaIV | GGNNCC | 1 cut(s) | 184 |
| PfeI | GAWTC | 1 cut(s) | 352 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 341 |
| PkrI | GCNGC | 1 cut(s) | 253 |
| PsiI | TTATAA | 1 cut(s) | 29 |
| PspN4I | GGNNCC | 1 cut(s) | 184 |
| RseI | CAYNNNNRTG | 1 cut(s) | 233 |
| SaqAI | TTAA | 1 cut(s) | 338 |
| SatI | GCNGC | 1 cut(s) | 252 |
| SduI | GDGCHC | 1 cut(s) | 164 |
| SetI | ASST | 6 cut(s) | 109, 142, 148, 194, 253, 351 |
| SfaNI | GCATC | 1 cut(s) | 63 |
| SgeI | CNNG | 8 cut(s) | 100, 116, 126, 156, 241, 269, 315, 331 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 233 |
| SmlI | CTYRAG | 1 cut(s) | 257 |
| SmoI | CTYRAG | 1 cut(s) | 257 |
| Sse9I | AATT | 3 cut(s) | 212, 266, 289 |
| SspI | AATATT | 1 cut(s) | 38 |
| SspMI | CTAG | 1 cut(s) | 104 |
| StyI | CCWWGG | 1 cut(s) | 87 |
| TasI | AATT | 3 cut(s) | 212, 266, 289 |
| TfiI | GAWTC | 1 cut(s) | 352 |
| Tru1I | TTAA | 1 cut(s) | 338 |
| Tru9I | TTAA | 1 cut(s) | 338 |
| TseI | GCWGC | 1 cut(s) | 251 |
| TspDTI | ATGAA | 2 cut(s) | 225, 245 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 341 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XspI | CTAG | 1 cut(s) | 104 |