Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0018548

Physical Location & Seq

Genomic Coordinates Reverse (-)

62540023 .. 62542243

Gene Structure 2221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG467900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCTTCAGCTGGTCCAGCGGCCCCAGCAGTACTACCGGTTTCAAGTGTTGAGAATCCAAATGGTAACAAGGCAAGTCGTAGCTCTTCAAGATCTCCACAAGATCCTCAACCAACCGCCACAGCTGACAGGTTGAAGATTGGATGTGCTAAGATTAGTTATCTCTACAGTTTGAAGCAACAGGATTTGAGTTCCAATAGCATTGGTGATGAAATTCCATACGTCTTACCCCCCAATGCGACTCATATTGAAAGCATCGCAAGATTGACAAAAAGCATGTCTTGGCTGCACAAGCTGTTCATTAGCACAGAACCAGCGAAACCAAAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

110

Amino Acids

11.74

Weight (kDa)

9.42

Isoelectric Point (pI)

75.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018548)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0381301
rosa_roxburghii	Rroxscaffold_4G00321050
rosa_samantha	Rh1AG018300 Rh1CG068000 Rh5AG340500 Rh6AG185800 Rh6BG055900 Rh7CG323100 Rh7CG467900 Rh7DG324000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	20, 117
AclWI	GGATC	1 cut(s)	98
AcsI	RAATTY	1 cut(s)	213
AfaI	GTAC	1 cut(s)	33
AgeI	ACCGGT	1 cut(s)	37
AgsI	TTSAA	5 cut(s)	45, 90, 136, 175, 251
AluBI	AGCT	5 cut(s)	11, 84, 125, 295, 328
AluI	AGCT	5 cut(s)	11, 84, 125, 295, 328
AlwI	GGATC	1 cut(s)	98
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	286
ApoI	RAATTY	1 cut(s)	213
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
AsiGI	ACCGGT	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	14, 22
AsuHPI	GGTGA	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	166
BglII	AGATCT	1 cut(s)	92
BisI	GCNGC	2 cut(s)	21, 287
BlsI	GCNGC	2 cut(s)	22, 288
BmcAI	AGTACT	1 cut(s)	33
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	2 cut(s)	14, 22
BmiI	GGNNCC	1 cut(s)	24
BmsI	GCATC	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	37
Bse118I	RCCGGY	1 cut(s)	37
BseGI	GGATG	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	273
BseYI	CCCAGC	1 cut(s)	25
BsgI	GTGCAG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	23
BshTI	ACCGGT	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	38
BsnI	GGCC	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	92, 103
BspACI	CCGC	2 cut(s)	20, 117
BspANI	GGCC	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	24
BspPI	GGATC	1 cut(s)	98
BspQI	GCTCTTC	1 cut(s)	91
BsrFI	RCCGGY	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	37
BssMI	GATC	2 cut(s)	92, 103
Bst4CI	ACNGT	1 cut(s)	170
Bst6I	CTCTTC	1 cut(s)	91
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	149
BstKTI	GATC	2 cut(s)	95, 106
BstMBI	GATC	2 cut(s)	92, 103
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 26, 292
BstNSI	RCATGY	1 cut(s)	280
BstSFI	CTRYAG	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	273
BstX2I	RGATCY	2 cut(s)	92, 103
BstYI	RGATCY	2 cut(s)	92, 103
BsuRI	GGCC	1 cut(s)	23
BtgZI	GCGATG	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	2 cut(s)	14, 22
Csp6I	GTAC	1 cut(s)	32
CspAI	ACCGGT	1 cut(s)	37
CviAII	CATG	1 cut(s)	277
CviJI	RGCY	8 cut(s)	5, 11, 23, 84, 125, 286, 295, 328
CviKI_1	RGCY	8 cut(s)	5, 11, 23, 84, 125, 286, 295, 328
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	2 cut(s)	94, 105
DpnII	GATC	2 cut(s)	92, 103
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	14
FaeI	CATG	1 cut(s)	280
FaiI	YATR	4 cut(s)	220, 246, 278, 331
FalI	AAGNNNNNCTT	2 cut(s)	265, 297
FatI	CATG	1 cut(s)	276
Fnu4HI	GCNGC	2 cut(s)	21, 287
FokI	GGATG	1 cut(s)	156
Fsp4HI	GCNGC	2 cut(s)	21, 287
GluI	GCNGC	2 cut(s)	21, 287
GsaI	CCCAGC	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	1 cut(s)	38
Hin1II	CATG	1 cut(s)	280
HinfI	GANTC	2 cut(s)	55, 241
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	1 cut(s)	218
Hpy188III	TCNNGA	1 cut(s)	90
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	1 cut(s)	289
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 26, 292
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	92, 103
LguI	GCTCTTC	1 cut(s)	91
LpnPI	CCDG	6 cut(s)	30, 39, 51, 115, 167, 327
Lsp1109I	GCAGC	1 cut(s)	273
LweI	GCATC	1 cut(s)	264
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	2 cut(s)	94, 105
MboI	GATC	2 cut(s)	92, 103
MboII	GAAGA	2 cut(s)	78, 148
MflI	RGATCY	2 cut(s)	92, 103
MluCI	AATT	1 cut(s)	213
MlyI	GAGTC	1 cut(s)	235
MnlI	CCTC	1 cut(s)	117
MspA1I	CMGCKG	3 cut(s)	11, 20, 125
MspI	CCGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	3 cut(s)	17, 26, 292
NdeII	GATC	2 cut(s)	92, 103
NlaIII	CATG	1 cut(s)	280
NlaIV	GGNNCC	1 cut(s)	24
NspI	RCATGY	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	55
PinAI	ACCGGT	1 cut(s)	37
PkrI	GCNGC	2 cut(s)	22, 288
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PspFI	CCCAGC	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	24
PspPI	GGNCC	2 cut(s)	14, 22
PsuI	RGATCY	2 cut(s)	92, 103
PvuII	CAGCTG	2 cut(s)	11, 125
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
SapI	GCTCTTC	1 cut(s)	91
SatI	GCNGC	2 cut(s)	21, 287
Sau3AI	GATC	2 cut(s)	92, 103
Sau96I	GGNCC	2 cut(s)	14, 22
ScaI	AGTACT	1 cut(s)	33
SchI	GAGTC	1 cut(s)	235
SetI	ASST	7 cut(s)	13, 86, 127, 134, 225, 297, 330
SfaNI	GCATC	1 cut(s)	264
SfcI	CTRYAG	1 cut(s)	166
SinI	GGWCC	1 cut(s)	14
Sse9I	AATT	1 cut(s)	213
SsiI	CCGC	2 cut(s)	20, 117
TaaI	ACNGT	1 cut(s)	170
TaiI	ACGT	1 cut(s)	225
TasI	AATT	1 cut(s)	213
TatI	WGTACW	1 cut(s)	31
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	286
TspDTI	ATGAA	2 cut(s)	225, 289
VpaK11BI	GGWCC	1 cut(s)	14
XapI	RAATTY	1 cut(s)	213
XceI	RCATGY	1 cut(s)	280
ZrmI	AGTACT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.