Rh1AG394400

Belongs to the glycosyl hydrolase 32 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
62274284 .. 62277978
3695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG394400.1

Sequence Viewer

Length: 1464 bp
ATGGACACTAGTACTTCTGCCTACGCTCCCTTGCCGGGAGAAGACCTTTTATTTTCCGGTCATCCCCCGGCAAGTCTCCGACGATCCTGGAAGGGCTTCGCCGTGATCTTCGCCTCCGTCTTGTTTCTCTTGTCATTGGTCGGACTAATCATCCATCAAGGCCCGCAACAACCGCCAGATGTAATGCCGGATAAACAAGATGAACATCATCATCCTCAGTCAACTACTCCAGCTTCAGAAACTACGTCGTCCTGGGAGCCGAGAGGGAAGGCACTAGGAGTCTCGGCCAAGTCGAACCCGCCGGTCTCCGACGAGCTCTCGTATAACTGGACCAATGCTATGTTCTCTTGGCAGAGAACAGCTTTTCACTTTCAACCGGAACGGAATTGGATGAATGGTCCATTGTTTTACAAGGGTTGGTATCACCTGTTCTACCAGTACAATCCGGACTCCGCCATATGGGGCAACATCACGTGGGGCCACGCCGTATCGACGGACCTGATCCACTGGCTATACCTCCCCCTCGCAATGGTCGCCGATCAATGGTACGATGCGAATGGCGTGTGGAGCGGGTCCGCCACGCTACTCCCCGACGGTCAGATCGTAATGTTGTACACGGGGGACACCGTCGATGCTGTTCAAGTGGTGTGCCTTGCGCACCCGGCCAACCTATCTGATCCCTTACTCATAGATTGGGTCAAGTACTCGGGTAACCCGGTGTTGACTCCTCCGCCCGGCATTTTAACCACCGATTTCCGTGACCCCACCACAGCTTGGACCGGACCGGACGGCAAGTGGCGCATTACTATTGGCTCAAAGGTCAATACAACCGGTATTTCCTTTGTGTACCACACAGAGGATTTCAAAACCTACAATATGTCGAAGGGGGTCTTGCATGCTGTTCCGGGTACGGGTATGTGGGAGTGCATTGACTTTTACCCGGTTGCCATAAACGGGTCGAAGGGTGTGGAAACGTCCGTGAATAACCCGAGTGTCAAGCATGTCCTGAAGGCGAGCTTGGACGACACAAAAGTGGATCACTTTGCACTTGGGACTTATTTTGAGGAGAATGAAACATGGGTACCCGATAACCCGGCTCTTGATGTGGGTATTGGGTTGAAGTATGACTATGGAAGATACTATGCATCAAAGACATTTTATGACCAGAACAAGGAGAGAAGGATCCTGTGGGGTTGGATCAATGAGACTGATACCGAATCCGATGACTTGGCAAAAGGTTGGGCATCTGTTCAGACTATTCCGAGGACTGTGTTGTTTGACAATAAAACCGGCACCAATTTGATCCAATGGCCAGTGGAAGAGATAGAGGAGTTGAGATTGAACAATACCGACTTCAGTGATGTTCTAGTTGAAGCAGGAACAGTTGTTGAGCTAGATATTGGAACAGCTACACAGGTTAGTTTGTCTAGTAAACTTGGCTACATATGCAATTTTGTCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.

Protein Analysis

487

Amino Acids

54.38

Weight (kDa)

4.88

Isoelectric Point (pI)

30.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
INV_N PF11837 8 - 114 8.7e-15 Beta-fructofuranosidase, N-terminal domain
Glyco_hydro_32N PF00251 123 - 438 1.4e-93 Glycosyl hydrolases family 32 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 657
Acc65I GGTACC 1 cut(s) 1081
AccB1I GGYRCC 2 cut(s) 1081, 1292
AccB7I CCANNNNNTGG 1 cut(s) 774
AccBSI CCGCTC 1 cut(s) 570
AccIII TCCGGA 1 cut(s) 445
AciI CCGC 7 cut(s) 164, 173, 299, 453, 570, 576, 731
AclWI GGATC 8 cut(s) 78, 496, 671, 1044, 1177, 1190, 1205, 1297
AcoI YGGCCR 3 cut(s) 285, 663, 1310
AcuI CTGAAG 3 cut(s) 219, 1028, 1339
AcvI CACGTG 1 cut(s) 474
AfaI GTAC 8 cut(s) 13, 440, 548, 614, 704, 848, 910, 1083
AgeI ACCGGT 1 cut(s) 830
AgsI TTSAA 6 cut(s) 374, 641, 865, 1120, 1342, 1373
AhlI ACTAGT 1 cut(s) 8
AjnI CCWGG 2 cut(s) 86, 251
AjuI GAANNNNNNNTTGG 4 cut(s) 326, 358, 1001, 1033
AleI CACNNNNGTG 1 cut(s) 1031
AluBI AGCT 7 cut(s) 233, 316, 362, 773, 1017, 1393, 1409
AluI AGCT 7 cut(s) 233, 316, 362, 773, 1017, 1393, 1409
Alw21I GWGCWC 1 cut(s) 318
Alw26I GTCTC 4 cut(s) 80, 286, 310, 1199
AlwI GGATC 8 cut(s) 78, 496, 671, 1044, 1177, 1190, 1205, 1297
Ama87I CYCGRG 2 cut(s) 706, 988
Aor13HI TCCGGA 1 cut(s) 445
AoxI GGCC 5 cut(s) 160, 285, 478, 663, 1310
AsiGI ACCGGT 1 cut(s) 830
Asp700I GAANNNNTTC 1 cut(s) 95
Asp718I GGTACC 1 cut(s) 1081
AspLEI GCGC 2 cut(s) 658, 801
AspS9I GGNCC 8 cut(s) 161, 330, 398, 478, 496, 573, 777, 782
AsuC2I CCSGG 8 cut(s) 36, 68, 662, 716, 735, 906, 941, 1094
AsuHPI GGTGA 1 cut(s) 416
AvaI CYCGRG 2 cut(s) 706, 988
AvaII GGWCC 6 cut(s) 330, 398, 496, 573, 777, 782
BaeI ACNNNNGTAYC 2 cut(s) 1065, 1098
BalI TGGCCA 1 cut(s) 1312
BamHI GGATCC 1 cut(s) 1182
BanI GGYRCC 2 cut(s) 1081, 1292
BanII GRGCYC 1 cut(s) 318
BbrPI CACGTG 1 cut(s) 474
BbsI GAAGAC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 318
BccI CCATC 1 cut(s) 162
BceAI ACGGC 3 cut(s) 86, 470, 805
BciT130I CCWGG 2 cut(s) 88, 253
BcnI CCSGG 8 cut(s) 36, 68, 662, 716, 735, 906, 941, 1094
BcoDI GTCTC 4 cut(s) 80, 286, 310, 1199
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 5 cut(s) 9, 275, 1367, 1394, 1428
BmcAI AGTACT 2 cut(s) 13, 704
Bme18I GGWCC 6 cut(s) 330, 398, 496, 573, 777, 782
BmeT110I CYCGRG 2 cut(s) 706, 988
BmgT120I GGNCC 8 cut(s) 161, 330, 398, 478, 496, 573, 777, 782
BmiI GGNNCC 6 cut(s) 258, 479, 574, 1083, 1184, 1294
BmsI GCATC 4 cut(s) 541, 622, 1154, 1253
BpiI GAAGAC 1 cut(s) 48
BpmI CTGGAG 1 cut(s) 213
BpuMI CCSGG 8 cut(s) 36, 68, 662, 716, 735, 906, 941, 1094
BsaAI YACGTR 1 cut(s) 474
BsaBI GATNNNNATC 1 cut(s) 204
BsaI GGTCTC 1 cut(s) 310
BsaJI CCNNGG 3 cut(s) 66, 252, 1262
BsaWI WCCGGW 6 cut(s) 56, 376, 445, 779, 784, 830
Bse118I RCCGGY 3 cut(s) 301, 830, 1289
Bse1I ACTGG 4 cut(s) 332, 436, 512, 1313
Bse3DI GCAATG 1 cut(s) 534
Bse8I GATNNNNATC 1 cut(s) 204
BseAI TCCGGA 1 cut(s) 445
BseBI CCWGG 2 cut(s) 88, 253
BseDI CCNNGG 3 cut(s) 66, 252, 1262
BseGI GGATG 4 cut(s) 61, 150, 211, 396
BseJI GATNNNNATC 1 cut(s) 204
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 4 cut(s) 332, 436, 512, 1313
BseRI GAGGAG 3 cut(s) 717, 1079, 1343
BshFI GGCC 5 cut(s) 162, 287, 480, 665, 1312
BshNI GGYRCC 2 cut(s) 1081, 1292
BshTI ACCGGT 1 cut(s) 830
BsiHKAI GWGCWC 1 cut(s) 318
BsiHKCI CYCGRG 2 cut(s) 706, 988
BslFI GGGAC 2 cut(s) 635, 1066
BsmAI GTCTC 4 cut(s) 80, 286, 310, 1199
BsmFI GGGAC 2 cut(s) 635, 1066
BsnI GGCC 5 cut(s) 162, 287, 480, 665, 1312
Bso31I GGTCTC 1 cut(s) 310
BsoBI CYCGRG 2 cut(s) 706, 988
Bsp1286I GDGCHC 1 cut(s) 318
Bsp13I TCCGGA 1 cut(s) 445
Bsp1407I TGTACA 1 cut(s) 612
BspACI CCGC 7 cut(s) 164, 173, 299, 453, 570, 576, 731
BspANI GGCC 5 cut(s) 162, 287, 480, 665, 1312
BspCNI CTCAG 1 cut(s) 229
BspEI TCCGGA 1 cut(s) 445
BspLI GGNNCC 6 cut(s) 258, 479, 574, 1083, 1184, 1294
BspPI GGATC 8 cut(s) 78, 496, 671, 1044, 1177, 1190, 1205, 1297
BspT107I GGYRCC 2 cut(s) 1081, 1292
BspTNI GGTCTC 1 cut(s) 310
BsrBI CCGCTC 1 cut(s) 570
BsrDI GCAATG 1 cut(s) 534
BsrFI RCCGGY 3 cut(s) 301, 830, 1289
BsrGI TGTACA 1 cut(s) 612
BsrI ACTGG 4 cut(s) 332, 436, 512, 1313
BssAI RCCGGY 3 cut(s) 301, 830, 1289
BssECI CCNNGG 3 cut(s) 66, 252, 1262
Bst2UI CCWGG 2 cut(s) 88, 253
Bst4CI ACNGT 4 cut(s) 596, 628, 1270, 1384
Bst6I CTCTTC 1 cut(s) 1314
BstAUI TGTACA 1 cut(s) 612
BstBAI YACGTR 1 cut(s) 474
BstC8I GCNNGC 3 cut(s) 164, 897, 1015
BstDEI CTNAG 1 cut(s) 216
BstEII GGTNACC 1 cut(s) 710
BstF5I GGATG 4 cut(s) 61, 150, 211, 396
BstHHI GCGC 2 cut(s) 658, 801
BstMAI GTCTC 4 cut(s) 80, 286, 310, 1199
BstMWI GCNNNNNNNGC 6 cut(s) 172, 533, 567, 662, 798, 1446
BstNI CCWGG 2 cut(s) 88, 253
BstNSI RCATGY 2 cut(s) 899, 1004
BstPI GGTNACC 1 cut(s) 710
BstV2I GAAGAC 1 cut(s) 48
BstX2I RGATCY 1 cut(s) 1182
BstYI RGATCY 1 cut(s) 1182
BsuRI GGCC 5 cut(s) 162, 287, 480, 665, 1312
BtsCI GGATG 4 cut(s) 61, 150, 211, 396
BtsIMutI CAGTG 3 cut(s) 505, 1320, 1363
Cac8I GCNNGC 3 cut(s) 164, 897, 1015
CfoI GCGC 2 cut(s) 658, 801
Cfr10I RCCGGY 3 cut(s) 301, 830, 1289
Cfr13I GGNCC 8 cut(s) 161, 330, 398, 478, 496, 573, 777, 782
CpoI CGGWCCG 1 cut(s) 782
Csp6I GTAC 8 cut(s) 12, 439, 547, 613, 703, 847, 909, 1082
CspAI ACCGGT 1 cut(s) 830
CspI CGGWCCG 1 cut(s) 782
CviAII CATG 3 cut(s) 896, 1001, 1077
CviQI GTAC 8 cut(s) 12, 439, 547, 613, 703, 847, 909, 1082
DdeI CTNAG 1 cut(s) 216
EaeI YGGCCR 3 cut(s) 285, 663, 1310
Eam1104I CTCTTC 1 cut(s) 1314
EarI CTCTTC 1 cut(s) 1314
EciI GGCGGA 3 cut(s) 442, 565, 720
Ecl136II GAGCTC 1 cut(s) 316
Eco24I GRGCYC 1 cut(s) 318
Eco31I GGTCTC 1 cut(s) 310
Eco47I GGWCC 6 cut(s) 330, 398, 496, 573, 777, 782
Eco53kI GAGCTC 1 cut(s) 316
Eco57I CTGAAG 3 cut(s) 219, 1028, 1339
Eco72I CACGTG 1 cut(s) 474
Eco88I CYCGRG 2 cut(s) 706, 988
Eco91I GGTNACC 1 cut(s) 710
EcoICRI GAGCTC 1 cut(s) 316
EcoO65I GGTNACC 1 cut(s) 710
EcoRII CCWGG 2 cut(s) 86, 251
EcoT22I ATGCAT 1 cut(s) 1147
EcoT38I GRGCYC 1 cut(s) 318
FaeI CATG 3 cut(s) 899, 1004, 1080
FalI AAGNNNNNCTT 4 cut(s) 875, 907, 1001, 1033
FaqI GGGAC 2 cut(s) 635, 1066
FatI CATG 3 cut(s) 895, 1000, 1076
FauI CCCGC 3 cut(s) 171, 306, 563
FauNDI CATATG 2 cut(s) 458, 1445
FokI GGATG 4 cut(s) 48, 137, 198, 403
FriOI GRGCYC 1 cut(s) 318
FspBI CTAG 5 cut(s) 9, 275, 1367, 1394, 1428
FspI TGCGCA 1 cut(s) 657
GlaI GCGC 2 cut(s) 657, 800
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 5 cut(s) 162, 287, 480, 665, 1312
HhaI GCGC 2 cut(s) 658, 801
Hin1II CATG 3 cut(s) 899, 1004, 1080
Hin6I GCGC 2 cut(s) 656, 799
HinP1I GCGC 2 cut(s) 656, 799
HincII GTYRAC 2 cut(s) 222, 723
HindII GTYRAC 2 cut(s) 222, 723
HinfI GANTC 4 cut(s) 279, 449, 724, 1217
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 5 cut(s) 222, 615, 723, 847, 1433
Hpy188I TCNGA 9 cut(s) 80, 143, 238, 310, 600, 676, 1222, 1254, 1263
Hpy188III TCNNGA 3 cut(s) 446, 1006, 1100
Hpy8I GTNNAC 5 cut(s) 222, 615, 723, 847, 1433
Hpy99I CGWCG 6 cut(s) 84, 250, 314, 496, 596, 632
HpyAV CCTTC 6 cut(s) 85, 262, 877, 955, 1003, 1173
HpyCH4III ACNGT 4 cut(s) 596, 628, 1270, 1384
HpyCH4IV ACGT 3 cut(s) 245, 473, 974
HpyCH4V TGCA 5 cut(s) 895, 927, 1046, 1145, 1449
HpyF10VI GCNNNNNNNGC 6 cut(s) 172, 533, 567, 662, 798, 1446
HpyF3I CTNAG 1 cut(s) 216
HpySE526I ACGT 3 cut(s) 245, 473, 974
Hsp92II CATG 3 cut(s) 899, 1004, 1080
HspAI GCGC 2 cut(s) 656, 799
Kpn2I TCCGGA 1 cut(s) 445
KpnI GGTACC 1 cut(s) 1085
LmnI GCTCC 3 cut(s) 31, 256, 567
LweI GCATC 4 cut(s) 541, 622, 1154, 1253
MaeI CTAG 5 cut(s) 9, 275, 1367, 1394, 1428
MaeII ACGT 3 cut(s) 245, 473, 974
MaeIII GTNAC 3 cut(s) 710, 758, 1456
MbiI CCGCTC 1 cut(s) 570
MboII GAAGA 4 cut(s) 53, 100, 1146, 1331
MflI RGATCY 1 cut(s) 1182
MhlI GDGCHC 1 cut(s) 318
MlsI TGGCCA 1 cut(s) 1312
MluCI AATT 3 cut(s) 385, 1297, 1450
MluNI TGGCCA 1 cut(s) 1312
MlyI GAGTC 3 cut(s) 288, 443, 718
MmeI TCCRAC 4 cut(s) 103, 121, 333, 1175
Mox20I TGGCCA 1 cut(s) 1312
Mph1103I ATGCAT 1 cut(s) 1147
MroI TCCGGA 1 cut(s) 445
MroXI GAANNNNTTC 1 cut(s) 95
MscI TGGCCA 1 cut(s) 1312
MseI TTAA 1 cut(s) 743
MslI CAYNNNNRTG 1 cut(s) 1031
Msp20I TGGCCA 1 cut(s) 1312
MvaI CCWGG 2 cut(s) 88, 253
MwoI GCNNNNNNNGC 6 cut(s) 172, 533, 567, 662, 798, 1446
NciI CCSGG 8 cut(s) 36, 68, 662, 716, 735, 906, 941, 1094
NdeI CATATG 2 cut(s) 458, 1445
NlaIII CATG 3 cut(s) 899, 1004, 1080
NlaIV GGNNCC 6 cut(s) 258, 479, 574, 1083, 1184, 1294
NmeAIII GCCGAG 2 cut(s) 263, 285
NmuCI GTSAC 2 cut(s) 758, 1456
NsbI TGCGCA 1 cut(s) 657
NsiI ATGCAT 1 cut(s) 1147
NspI RCATGY 2 cut(s) 899, 1004
OliI CACNNNNGTG 1 cut(s) 1031
PaeI GCATGC 1 cut(s) 899
PcsI WCGNNNNNNNCGW 2 cut(s) 290, 600
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 1217
PflFI GACNNNGTC 1 cut(s) 626
PflMI CCANNNNNTGG 1 cut(s) 774
PfoI TCCNGGA 1 cut(s) 86
PinAI ACCGGT 1 cut(s) 830
PleI GAGTC 3 cut(s) 287, 443, 718
PmaCI CACGTG 1 cut(s) 474
PmlI CACGTG 1 cut(s) 474
PpsI GAGTC 3 cut(s) 287, 443, 718
Ppu21I YACGTR 1 cut(s) 474
Psp124BI GAGCTC 1 cut(s) 318
Psp6I CCWGG 2 cut(s) 86, 251
PspCI CACGTG 1 cut(s) 474
PspEI GGTNACC 1 cut(s) 710
PspGI CCWGG 2 cut(s) 86, 251
PspN4I GGNNCC 6 cut(s) 258, 479, 574, 1083, 1184, 1294
PspPI GGNCC 8 cut(s) 161, 330, 398, 478, 496, 573, 777, 782
PsrI GAACNNNNNNTAC 2 cut(s) 413, 445
PsuI RGATCY 1 cut(s) 1182
PsyI GACNNNGTC 1 cut(s) 626
RsaI GTAC 8 cut(s) 13, 440, 548, 614, 704, 848, 910, 1083
RsaNI GTAC 8 cut(s) 12, 439, 547, 613, 703, 847, 909, 1082
RseI CAYNNNNRTG 1 cut(s) 1031
Rsr2I CGGWCCG 1 cut(s) 782
RsrII CGGWCCG 1 cut(s) 782
SacI GAGCTC 1 cut(s) 318
SaqAI TTAA 1 cut(s) 743
Sau96I GGNCC 8 cut(s) 161, 330, 398, 478, 496, 573, 777, 782
ScaI AGTACT 2 cut(s) 13, 704
SchI GAGTC 3 cut(s) 288, 443, 718
SduI GDGCHC 1 cut(s) 318
SfaNI GCATC 4 cut(s) 541, 622, 1154, 1253
SinI GGWCC 6 cut(s) 330, 398, 496, 573, 777, 782
SmiMI CAYNNNNRTG 1 cut(s) 1031
SpeI ACTAGT 1 cut(s) 8
SphI GCATGC 1 cut(s) 899
Sse9I AATT 3 cut(s) 385, 1297, 1450
SsiI CCGC 7 cut(s) 164, 173, 299, 453, 570, 576, 731
SspMI CTAG 5 cut(s) 9, 275, 1367, 1394, 1428
SstI GAGCTC 1 cut(s) 318
TaaI ACNGT 4 cut(s) 596, 628, 1270, 1384
TaiI ACGT 3 cut(s) 248, 476, 977
TaqI TCGA 5 cut(s) 293, 491, 630, 881, 959
TasI AATT 3 cut(s) 385, 1297, 1450
TatI WGTACW 4 cut(s) 11, 438, 612, 702
TfiI GAWTC 1 cut(s) 1217
Tru1I TTAA 1 cut(s) 743
Tru9I TTAA 1 cut(s) 743
TscAI CASTG 3 cut(s) 512, 1320, 1363
TseFI GTSAC 2 cut(s) 758, 1456
Tsp45I GTSAC 2 cut(s) 758, 1456
TspDTI ATGAA 3 cut(s) 216, 407, 1086
TspGWI ACGGA 5 cut(s) 106, 397, 509, 746, 967
TspRI CASTG 3 cut(s) 512, 1320, 1363
Tth111I GACNNNGTC 1 cut(s) 626
Van91I CCANNNNNTGG 1 cut(s) 774
VpaK11BI GGWCC 6 cut(s) 330, 398, 496, 573, 777, 782
XceI RCATGY 2 cut(s) 899, 1004
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 5 cut(s) 9, 275, 1367, 1394, 1428
ZrmI AGTACT 2 cut(s) 13, 704
Zsp2I ATGCAT 1 cut(s) 1147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.