Rh1BG359000

Belongs to the glycosyl hydrolase 32 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
48964705 .. 48968047
3343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG359000.1

Sequence Viewer

Length: 1566 bp
ATGTGGCTTTGCTCTACTTCAGATCCTAATGGTCCATTGTTTTACAAGGGTTGGTATCACCTGTTCTACCAGTACAATCCGGACTCCGCCATATGGGGCAACATCACGTGGGGCCACGCCGTATCGACGGACCTGATCCACTGGCTATACCTCCCCCTCGCAATGGTCGCCGATCAATGGTATGATGCGAATGGCGTGTGGAGCGGGTCCGCCACGCTACTCCCCGACGGTCAGATCGTAATGTTGTACACGGGGGACACCGTCGATGCGGTTCAAGTGGTGTGCCTTGCGTACCCGGCCAACCTATCTGATCCCCTACTCTTAGATTGGGTCAAGTACTCGGGTAACCCGGTGTTGACTCCTCCGCCCGGCATTTTATCCACAGATTTCCGTGACCCCACCACAGCGTGGACCGGACCGGACGACAAGTGGCGCATTACTATTGGCTCAAAGGTCAATACAACCGGTATTTCCTTTGTATACCACACAGAGGATTTCAAAACCTACAATATGTCGGAGGGGGTCTTGCACGCGGTTCCGGGTACGGGTATGTGGGAGTGCATTGACTTTTACCCGGTTGCTATAAACGGGTCGAAGGGTGTGGAAACGTCCGTGAATAACCCGAGTGTCAAGCATGTCCTAAAGGCTAGCTTGGACGACACAAAAGTGGATTACTATGCACTTGGGACTTATTTTGAGGAGAATGAAACATGGGTACCCGATAACCCGGCTCTTGATGTGGGTATTGGGTTGAGGTATGACTATGGAAGATACTATGCATCAAAGACATTTTATGACCAGAACAAGGAGAGAAGGATCCTGTGGGGTTGGATCAATGAGACTGATACCGAATCCGATGACTTGGCAAAAGGTTGGGCATCTGTTCAGACTATTCCGAGGAGTGTGTTGTTTGACAATAAAACCGGCACCAATTTGATCCAATGGCCGGTGGAAGAGATCGAGGAGTTGAGATTGAACAGTACCGACTTCAGTGATGTTCTAGTTGAAGCAGGAACAGTTGTTGAACTAGATATTGGAACAGCTACACAGTTGGACATTTTAGTGGAGTTTGAATTAGAACCGTTGGAATCATCAGAGACTGTGAATAGCAGTGTAGGTTGTGGTGGTGGTGCTGTAGATAGAGGCACGTTTGGACCATTTGGTATTCTGGTCATTGCAGATGAGACTCTTACTGAGCTAACCCCTATCTATTTCAACCTCGCCAATTCAACTGAAGGGGACGTCACAACTTATTTCTGCGCAGACGAAAGAAGATCATCTAAGGCTCCTGATGTCTTCAAACAAGTTTATGGAAGTGAAGTTCCTGTGTTGGATGGTGAAAAACACTTCGCAAGAGTGTTGGTTGATCATTCAATTGTAGAGAGCTTTGCGCAAGGAGGTAGGACGGTGATTACATCACGAGTTTATCCAACAGAAGCAATCTACGGAGCAGCAAGGCTATTTTTGTTCAACAATGCAACAGGTCTAAATGTTAAGGCCACCCTCAAGATTTGGCAGCTAAACTCAGCTTTCATTCACCCTTTCCCATTAGACCAGATTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.

Protein Analysis

521

Amino Acids

57.96

Weight (kDa)

4.43

Isoelectric Point (pI)

29.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_32N PF00251 7 - 316 7.8e-94 Glycosyl hydrolases family 32 N-terminal domain
Glyco_hydro_32C PF08244 319 - 506 3.9e-20 Glycosyl hydrolases family 32 C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1245
Acc16I TGCGCA 2 cut(s) 1261, 1392
Acc65I GGTACC 1 cut(s) 715
AccB1I GGYRCC 2 cut(s) 715, 926
AccB7I CCANNNNNTGG 1 cut(s) 408
AccBSI CCGCTC 1 cut(s) 204
AccI GTMKAC 1 cut(s) 480
AccII CGCG 1 cut(s) 533
AccIII TCCGGA 1 cut(s) 79
AciI CCGC 6 cut(s) 87, 204, 210, 269, 365, 533
AclWI GGATC 7 cut(s) 17, 130, 305, 811, 824, 839, 931
AcoI YGGCCR 2 cut(s) 297, 944
AcuI CTGAAG 2 cut(s) 973, 1254
AcvI CACGTG 1 cut(s) 108
AcyI GRCGYC 1 cut(s) 1242
AdeI CACNNNGTG 1 cut(s) 408
AfaI GTAC 7 cut(s) 74, 248, 293, 338, 544, 717, 982
AfiI CCNNNNNNNGG 9 cut(s) 93, 163, 177, 368, 408, 490, 545, 805, 946
AgeI ACCGGT 1 cut(s) 464
AjuI GAANNNNNNNTTGG 2 cut(s) 1017, 1049
AleI CACNNNNGTG 1 cut(s) 665
AloI GAACNNNNNNTCC 2 cut(s) 1305, 1337
AluBI AGCT 6 cut(s) 651, 1043, 1198, 1386, 1519, 1529
AluI AGCT 6 cut(s) 651, 1043, 1198, 1386, 1519, 1529
Alw26I GTCTC 3 cut(s) 833, 1091, 1178
AlwI GGATC 7 cut(s) 17, 130, 305, 811, 824, 839, 931
AlwNI CAGNNNCTG 1 cut(s) 1100
Ama87I CYCGRG 2 cut(s) 340, 622
Aor13HI TCCGGA 1 cut(s) 79
AoxI GGCC 4 cut(s) 112, 297, 944, 1497
ApeKI GCWGC 2 cut(s) 1451, 1516
AsiGI ACCGGT 1 cut(s) 464
Asp718I GGTACC 1 cut(s) 715
AspLEI GCGC 3 cut(s) 435, 1262, 1393
AspS9I GGNCC 7 cut(s) 32, 112, 130, 207, 411, 416, 1154
AsuC2I CCSGG 6 cut(s) 296, 350, 369, 540, 575, 728
AsuHPI GGTGA 4 cut(s) 50, 1349, 1420, 1529
AsuNHI GCTAGC 1 cut(s) 647
AvaI CYCGRG 2 cut(s) 340, 622
AvaII GGWCC 6 cut(s) 32, 130, 207, 411, 416, 1154
BaeI ACNNNNGTAYC 2 cut(s) 699, 732
BamHI GGATCC 1 cut(s) 816
BanI GGYRCC 2 cut(s) 715, 926
BauI CACGAG 1 cut(s) 1419
BbrPI CACGTG 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 1288
BbvI GCAGC 2 cut(s) 1463, 1528
BccI CCATC 1 cut(s) 1328
BceAI ACGGC 1 cut(s) 104
BclI TGATCA 1 cut(s) 1366
BcnI CCSGG 6 cut(s) 296, 350, 369, 540, 575, 728
BcoDI GTCTC 3 cut(s) 833, 1091, 1178
BfaI CTAG 3 cut(s) 648, 1001, 1028
BfmI CTRYAG 1 cut(s) 1134
BisI GCNGC 2 cut(s) 1452, 1517
BlsI GCNGC 2 cut(s) 1453, 1518
BmcAI AGTACT 1 cut(s) 338
Bme1390I CCNGG 6 cut(s) 296, 350, 369, 540, 575, 728
Bme18I GGWCC 6 cut(s) 32, 130, 207, 411, 416, 1154
BmeT110I CYCGRG 2 cut(s) 340, 622
BmgT120I GGNCC 7 cut(s) 32, 112, 130, 207, 411, 416, 1154
BmiI GGNNCC 7 cut(s) 113, 208, 537, 717, 818, 928, 1287
BmrFI CCNGG 6 cut(s) 296, 350, 369, 540, 575, 728
BmsI GCATC 4 cut(s) 175, 256, 788, 887
BmtI GCTAGC 1 cut(s) 651
BpiI GAAGAC 1 cut(s) 1288
BpuEI CTTGAG 1 cut(s) 1490
BpuMI CCSGG 6 cut(s) 296, 350, 369, 540, 575, 728
BsaAI YACGTR 1 cut(s) 108
BsaHI GRCGYC 1 cut(s) 1242
BsaJI CCNNGG 1 cut(s) 896
BsaWI WCCGGW 4 cut(s) 79, 413, 418, 464
Bsc4I CCNNNNNNNGG 9 cut(s) 93, 163, 177, 368, 408, 490, 545, 805, 946
Bse118I RCCGGY 3 cut(s) 464, 923, 946
Bse1I ACTGG 2 cut(s) 70, 146
Bse3DI GCAATG 2 cut(s) 168, 1173
BseAI TCCGGA 1 cut(s) 79
BseDI CCNNGG 1 cut(s) 896
BseGI GGATG 1 cut(s) 1339
BseLI CCNNNNNNNGG 9 cut(s) 93, 163, 177, 368, 408, 490, 545, 805, 946
BseMI GCAATG 2 cut(s) 168, 1173
BseMII CTCAG 2 cut(s) 1185, 1539
BseNI ACTGG 2 cut(s) 70, 146
BseRI GAGGAG 4 cut(s) 351, 713, 913, 977
BseXI GCAGC 2 cut(s) 1463, 1528
Bsh1236I CGCG 1 cut(s) 533
BshFI GGCC 4 cut(s) 114, 299, 946, 1499
BshNI GGYRCC 2 cut(s) 715, 926
BshTI ACCGGT 1 cut(s) 464
BsiHKCI CYCGRG 2 cut(s) 340, 622
BslFI GGGAC 3 cut(s) 269, 700, 1253
BslI CCNNNNNNNGG 9 cut(s) 93, 163, 177, 368, 408, 490, 545, 805, 946
BsmAI GTCTC 3 cut(s) 833, 1091, 1178
BsmFI GGGAC 3 cut(s) 269, 700, 1253
BsnI GGCC 4 cut(s) 114, 299, 946, 1499
BsoBI CYCGRG 2 cut(s) 340, 622
Bsp13I TCCGGA 1 cut(s) 79
Bsp1407I TGTACA 1 cut(s) 246
BspACI CCGC 6 cut(s) 87, 204, 210, 269, 365, 533
BspANI GGCC 4 cut(s) 114, 299, 946, 1499
BspCNI CTCAG 2 cut(s) 1186, 1538
BspEI TCCGGA 1 cut(s) 79
BspFNI CGCG 1 cut(s) 533
BspLI GGNNCC 7 cut(s) 113, 208, 537, 717, 818, 928, 1287
BspOI GCTAGC 1 cut(s) 651
BspPI GGATC 7 cut(s) 17, 130, 305, 811, 824, 839, 931
BspT107I GGYRCC 2 cut(s) 715, 926
BsrBI CCGCTC 1 cut(s) 204
BsrDI GCAATG 2 cut(s) 168, 1173
BsrFI RCCGGY 3 cut(s) 464, 923, 946
BsrGI TGTACA 1 cut(s) 246
BsrI ACTGG 2 cut(s) 70, 146
BssAI RCCGGY 3 cut(s) 464, 923, 946
BssECI CCNNGG 1 cut(s) 896
BssNAI GTATAC 1 cut(s) 481
BssNI GRCGYC 1 cut(s) 1242
BssSI CACGAG 1 cut(s) 1419
Bst1107I GTATAC 1 cut(s) 481
Bst2BI CACGAG 1 cut(s) 1419
Bst4CI ACNGT 8 cut(s) 230, 262, 980, 1018, 1050, 1083, 1102, 1408
Bst6I CTCTTC 1 cut(s) 948
BstACI GRCGYC 1 cut(s) 1242
BstAUI TGTACA 1 cut(s) 246
BstBAI YACGTR 1 cut(s) 108
BstC8I GCNNGC 2 cut(s) 531, 649
BstDEI CTNAG 4 cut(s) 322, 1194, 1281, 1525
BstEII GGTNACC 1 cut(s) 344
BstF5I GGATG 1 cut(s) 1339
BstFNI CGCG 1 cut(s) 533
BstHHI GCGC 3 cut(s) 435, 1262, 1393
BstMAI GTCTC 3 cut(s) 833, 1091, 1178
BstMWI GCNNNNNNNGC 3 cut(s) 167, 201, 296
BstNSI RCATGY 1 cut(s) 638
BstPI GGTNACC 1 cut(s) 344
BstSCI CCNGG 6 cut(s) 294, 348, 367, 538, 573, 726
BstSFI CTRYAG 1 cut(s) 1134
BstUI CGCG 1 cut(s) 533
BstV1I GCAGC 2 cut(s) 1463, 1528
BstV2I GAAGAC 1 cut(s) 1288
BstX2I RGATCY 2 cut(s) 22, 816
BstYI RGATCY 2 cut(s) 22, 816
BstZ17I GTATAC 1 cut(s) 481
BsuRI GGCC 4 cut(s) 114, 299, 946, 1499
BtsCI GGATG 1 cut(s) 1339
BtsI GCAGTG 1 cut(s) 1117
BtsIMutI CAGTG 3 cut(s) 139, 997, 1117
Cac8I GCNNGC 2 cut(s) 531, 649
CaiI CAGNNNCTG 1 cut(s) 1100
CfoI GCGC 3 cut(s) 435, 1262, 1393
Cfr10I RCCGGY 3 cut(s) 464, 923, 946
Cfr13I GGNCC 7 cut(s) 32, 112, 130, 207, 411, 416, 1154
CpoI CGGWCCG 1 cut(s) 416
Csp6I GTAC 7 cut(s) 73, 247, 292, 337, 543, 716, 981
CspAI ACCGGT 1 cut(s) 464
CspI CGGWCCG 1 cut(s) 416
CviAII CATG 2 cut(s) 635, 711
CviQI GTAC 7 cut(s) 73, 247, 292, 337, 543, 716, 981
DdeI CTNAG 4 cut(s) 322, 1194, 1281, 1525
DraIII CACNNNGTG 1 cut(s) 408
EaeI YGGCCR 2 cut(s) 297, 944
Eam1104I CTCTTC 1 cut(s) 948
EarI CTCTTC 1 cut(s) 948
EciI GGCGGA 3 cut(s) 76, 199, 354
Eco47I GGWCC 6 cut(s) 32, 130, 207, 411, 416, 1154
Eco57I CTGAAG 2 cut(s) 973, 1254
Eco72I CACGTG 1 cut(s) 108
Eco88I CYCGRG 2 cut(s) 340, 622
Eco91I GGTNACC 1 cut(s) 344
EcoO65I GGTNACC 1 cut(s) 344
EcoT22I ATGCAT 1 cut(s) 781
FaeI CATG 2 cut(s) 638, 714
FalI AAGNNNNNCTT 2 cut(s) 635, 667
FaqI GGGAC 3 cut(s) 269, 700, 1253
FatI CATG 2 cut(s) 634, 710
FauI CCCGC 1 cut(s) 197
FauNDI CATATG 1 cut(s) 92
FbaI TGATCA 1 cut(s) 1366
FblI GTMKAC 1 cut(s) 480
Fnu4HI GCNGC 2 cut(s) 1452, 1517
FokI GGATG 1 cut(s) 1346
Fsp4HI GCNGC 2 cut(s) 1452, 1517
FspBI CTAG 3 cut(s) 648, 1001, 1028
FspI TGCGCA 2 cut(s) 1261, 1392
GlaI GCGC 3 cut(s) 434, 1261, 1392
GluI GCNGC 2 cut(s) 1452, 1517
HaeIII GGCC 4 cut(s) 114, 299, 946, 1499
HhaI GCGC 3 cut(s) 435, 1262, 1393
Hin1I GRCGYC 1 cut(s) 1242
Hin1II CATG 2 cut(s) 638, 714
Hin6I GCGC 3 cut(s) 433, 1260, 1391
HinP1I GCGC 3 cut(s) 433, 1260, 1391
HincII GTYRAC 1 cut(s) 357
HindII GTYRAC 1 cut(s) 357
HinfI GANTC 6 cut(s) 83, 358, 851, 1088, 1186, 1558
HphI GGTGA 4 cut(s) 50, 1349, 1420, 1529
Hpy166II GTNNAC 4 cut(s) 249, 357, 411, 481
Hpy188I TCNGA 8 cut(s) 22, 234, 310, 517, 856, 888, 897, 1096
Hpy188III TCNNGA 5 cut(s) 80, 734, 1289, 1419, 1507
Hpy8I GTNNAC 4 cut(s) 249, 357, 411, 481
Hpy99I CGWCG 3 cut(s) 130, 230, 266
HpyAV CCTTC 3 cut(s) 589, 807, 1229
HpyCH4III ACNGT 8 cut(s) 230, 262, 980, 1018, 1050, 1083, 1102, 1408
HpyCH4IV ACGT 4 cut(s) 107, 608, 1148, 1242
HpyCH4V TGCA 6 cut(s) 529, 561, 680, 779, 1178, 1478
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 201, 296
HpyF3I CTNAG 4 cut(s) 322, 1194, 1281, 1525
HpySE526I ACGT 4 cut(s) 107, 608, 1148, 1242
Hsp92I GRCGYC 1 cut(s) 1242
Hsp92II CATG 2 cut(s) 638, 714
HspAI GCGC 3 cut(s) 433, 1260, 1391
Kpn2I TCCGGA 1 cut(s) 79
KpnI GGTACC 1 cut(s) 719
Ksp22I TGATCA 1 cut(s) 1366
LmnI GCTCC 3 cut(s) 201, 1291, 1448
Lsp1109I GCAGC 2 cut(s) 1463, 1528
LweI GCATC 4 cut(s) 175, 256, 788, 887
MaeI CTAG 3 cut(s) 648, 1001, 1028
MaeII ACGT 4 cut(s) 107, 608, 1148, 1242
MaeIII GTNAC 3 cut(s) 344, 392, 1243
MbiI CCGCTC 1 cut(s) 204
MboII GAAGA 4 cut(s) 780, 965, 1284, 1288
MfeI CAATTG 1 cut(s) 1374
MflI RGATCY 2 cut(s) 22, 816
MluCI AATT 4 cut(s) 931, 1073, 1225, 1374
MlyI GAGTC 3 cut(s) 77, 352, 1180
MmeI TCCRAC 6 cut(s) 495, 809, 1032, 1065, 1311, 1454
Mph1103I ATGCAT 1 cut(s) 781
MroI TCCGGA 1 cut(s) 79
MseI TTAA 1 cut(s) 1494
MslI CAYNNNNRTG 2 cut(s) 665, 1061
MspR9I CCNGG 6 cut(s) 296, 350, 369, 540, 575, 728
MunI CAATTG 1 cut(s) 1374
MvnI CGCG 1 cut(s) 533
MwoI GCNNNNNNNGC 3 cut(s) 167, 201, 296
NciI CCSGG 6 cut(s) 296, 350, 369, 540, 575, 728
NdeI CATATG 1 cut(s) 92
NheI GCTAGC 1 cut(s) 647
NlaIII CATG 2 cut(s) 638, 714
NlaIV GGNNCC 7 cut(s) 113, 208, 537, 717, 818, 928, 1287
NmuCI GTSAC 2 cut(s) 392, 1243
NsbI TGCGCA 2 cut(s) 1261, 1392
NsiI ATGCAT 1 cut(s) 781
NspI RCATGY 1 cut(s) 638
OliI CACNNNNGTG 1 cut(s) 665
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PfeI GAWTC 3 cut(s) 851, 1088, 1558
PflFI GACNNNGTC 1 cut(s) 260
PflMI CCANNNNNTGG 1 cut(s) 408
PinAI ACCGGT 1 cut(s) 464
PkrI GCNGC 2 cut(s) 1453, 1518
PleI GAGTC 3 cut(s) 77, 352, 1180
PmaCI CACGTG 1 cut(s) 108
PmlI CACGTG 1 cut(s) 108
PpsI GAGTC 3 cut(s) 77, 352, 1180
Ppu21I YACGTR 1 cut(s) 108
PspCI CACGTG 1 cut(s) 108
PspEI GGTNACC 1 cut(s) 344
PspN4I GGNNCC 7 cut(s) 113, 208, 537, 717, 818, 928, 1287
PspPI GGNCC 7 cut(s) 32, 112, 130, 207, 411, 416, 1154
PsrI GAACNNNNNNTAC 2 cut(s) 47, 79
PstNI CAGNNNCTG 1 cut(s) 1100
PsuI RGATCY 2 cut(s) 22, 816
PsyI GACNNNGTC 1 cut(s) 260
RsaI GTAC 7 cut(s) 74, 248, 293, 338, 544, 717, 982
RsaNI GTAC 7 cut(s) 73, 247, 292, 337, 543, 716, 981
RseI CAYNNNNRTG 2 cut(s) 665, 1061
Rsr2I CGGWCCG 1 cut(s) 416
RsrII CGGWCCG 1 cut(s) 416
SaqAI TTAA 1 cut(s) 1494
SatI GCNGC 2 cut(s) 1452, 1517
Sau96I GGNCC 7 cut(s) 32, 112, 130, 207, 411, 416, 1154
ScaI AGTACT 1 cut(s) 338
SchI GAGTC 3 cut(s) 77, 352, 1180
ScrFI CCNGG 6 cut(s) 296, 350, 369, 540, 575, 728
SfaNI GCATC 4 cut(s) 175, 256, 788, 887
SfcI CTRYAG 1 cut(s) 1134
SinI GGWCC 6 cut(s) 32, 130, 207, 411, 416, 1154
SmiMI CAYNNNNRTG 2 cut(s) 665, 1061
SmlI CTYRAG 1 cut(s) 1505
SmoI CTYRAG 1 cut(s) 1505
Sse9I AATT 4 cut(s) 931, 1073, 1225, 1374
SsiI CCGC 6 cut(s) 87, 204, 210, 269, 365, 533
SspMI CTAG 3 cut(s) 648, 1001, 1028
StyD4I CCNGG 6 cut(s) 294, 348, 367, 538, 573, 726
TaaI ACNGT 8 cut(s) 230, 262, 980, 1018, 1050, 1083, 1102, 1408
TaiI ACGT 4 cut(s) 110, 611, 1151, 1245
TaqI TCGA 4 cut(s) 125, 264, 593, 960
TasI AATT 4 cut(s) 931, 1073, 1225, 1374
TatI WGTACW 3 cut(s) 72, 246, 336
TfiI GAWTC 3 cut(s) 851, 1088, 1558
Tru1I TTAA 1 cut(s) 1494
Tru9I TTAA 1 cut(s) 1494
TscAI CASTG 3 cut(s) 146, 997, 1117
TseFI GTSAC 2 cut(s) 392, 1243
TseI GCWGC 2 cut(s) 1451, 1516
Tsp45I GTSAC 2 cut(s) 392, 1243
TspDTI ATGAA 2 cut(s) 720, 1522
TspGWI ACGGA 4 cut(s) 143, 380, 601, 1461
TspRI CASTG 3 cut(s) 146, 997, 1117
Tth111I GACNNNGTC 1 cut(s) 260
Van91I CCANNNNNTGG 1 cut(s) 408
VpaK11BI GGWCC 6 cut(s) 32, 130, 207, 411, 416, 1154
XceI RCATGY 1 cut(s) 638
XmiI GTMKAC 1 cut(s) 480
XspI CTAG 3 cut(s) 648, 1001, 1028
ZraI GACGTC 1 cut(s) 1243
ZrmI AGTACT 1 cut(s) 338
Zsp2I ATGCAT 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.