Rh1DG013500

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0014738
Physical Location & Seq
Forward (+)
2167909 .. 2168214
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG013500.1

Sequence Viewer

Length: 306 bp
ATGCTTCCCAAATACGACACGAGGCGTGCCAAGATGGAGCAATTCTACTTTGTTGAGGAGATCAAGAACATCATCAGCTGTGAAGGACCAGCACGAGTGGAGAGGCATGAGAGGGTTGATCAGTGGCGCAGGAGGATGAGCTGTGCCGGGTTTCAGGGTGCACCGATTAAGATGATGGCTCAAGCAAAGCTGTTGCTAGGGAAGAGTAAGGTTTGTGAGGGCTACACTGTTGTGGAAGAAAAGGGTTGCTTGGTTCTTGGTTGGAAATCAAGGCCTATTGTTGTTGCTTCTTGCTGGAAATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

101

Amino Acids

11.69

Weight (kDa)

9.41

Isoelectric Point (pI)

73.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 2 - 100 6.3e-30 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014738)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g07610
malus_domestica MD06G1148900.v1.1 MD14G1162800.v1.1
prunus_persica Prupe.5G156100_v2.0.a1
pyrus_communis pycom06g13830
rosa_chinensis RchiOBHm_Chr7g0190881
rosa_laevigata RLG00000004489
rosa_multiflora Rmu_sc0004443.1_g000019 Rmu_sc0006903.1_g000003
rosa_roxburghii Rroxscaffold_3G00264230
rosa_rugosa Rorug06G0507700
rosa_samantha Rh1DG013400 Rh1DG013500 Rh7AG114400 Rh7CG119900 Rh7DG118200
rosa_wichuraiana Rw7G009980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AleI CACNNNNGTG 1 cut(s) 230
AluBI AGCT 3 cut(s) 78, 141, 190
AluI AGCT 3 cut(s) 78, 141, 190
Alw21I GWGCWC 1 cut(s) 163
Alw44I GTGCAC 1 cut(s) 159
AoxI GGCC 1 cut(s) 272
ApaLI GTGCAC 1 cut(s) 159
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 86
AsuC2I CCSGG 1 cut(s) 148
AvaII GGWCC 1 cut(s) 86
BaeGI GKGCMC 1 cut(s) 163
BauI CACGAG 2 cut(s) 19, 93
Bbv12I GWGCWC 1 cut(s) 163
BccI CCATC 2 cut(s) 28, 169
BclI TGATCA 1 cut(s) 118
BcnI CCSGG 1 cut(s) 148
BfaI CTAG 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 148
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 148
BpuEI CTTGAG 1 cut(s) 165
BpuMI CCSGG 1 cut(s) 148
BseGI GGATG 1 cut(s) 141
BseRI GAGGAG 1 cut(s) 71
BseSI GKGCMC 1 cut(s) 163
BshFI GGCC 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 163
BsiSI CCGG 1 cut(s) 147
BsnI GGCC 1 cut(s) 274
Bsp1286I GDGCHC 1 cut(s) 163
Bsp143I GATC 2 cut(s) 60, 118
BspANI GGCC 1 cut(s) 274
BssMI GATC 2 cut(s) 60, 118
BssSI CACGAG 2 cut(s) 19, 93
Bst2BI CACGAG 2 cut(s) 19, 93
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 27
BstF5I GGATG 1 cut(s) 141
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 2 cut(s) 63, 121
BstMBI GATC 2 cut(s) 60, 118
BstMWI GCNNNNNNNGC 1 cut(s) 300
BstSCI CCNGG 1 cut(s) 146
BstSLI GKGCMC 1 cut(s) 163
BsuRI GGCC 1 cut(s) 274
BtsCI GGATG 1 cut(s) 141
BtsIMutI CAGTG 2 cut(s) 128, 225
Cac8I GCNNGC 1 cut(s) 27
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 86
CviAII CATG 1 cut(s) 107
CviJI RGCY 6 cut(s) 78, 141, 179, 190, 222, 274
CviKI_1 RGCY 6 cut(s) 78, 141, 179, 190, 222, 274
DpnI GATC 2 cut(s) 62, 120
DpnII GATC 2 cut(s) 60, 118
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Eco147I AGGCCT 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 86
FaeI CATG 1 cut(s) 110
FaiI YATR 1 cut(s) 108
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FatI CATG 1 cut(s) 106
FbaI TGATCA 1 cut(s) 118
FokI GGATG 1 cut(s) 148
FspBI CTAG 1 cut(s) 197
GlaI GCGC 1 cut(s) 128
HaeIII GGCC 1 cut(s) 274
HapII CCGG 1 cut(s) 147
HhaI GCGC 1 cut(s) 129
Hin1II CATG 1 cut(s) 110
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HpaII CCGG 1 cut(s) 147
Hpy166II GTNNAC 1 cut(s) 161
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 1 cut(s) 161
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 300
Hsp92II CATG 1 cut(s) 110
HspAI GCGC 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 2 cut(s) 60, 118
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 5 cut(s) 102, 115, 140, 160, 280
MaeI CTAG 1 cut(s) 197
MalI GATC 2 cut(s) 62, 120
MboI GATC 2 cut(s) 60, 118
MboII GAAGA 2 cut(s) 214, 248
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 242
MnlI CCTC 6 cut(s) 15, 49, 96, 105, 126, 211
MseI TTAA 1 cut(s) 168
MslI CAYNNNNRTG 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 78
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 148
MwoI GCNNNNNNNGC 1 cut(s) 300
NciI CCSGG 1 cut(s) 148
NdeII GATC 2 cut(s) 60, 118
NlaIII CATG 1 cut(s) 110
OliI CACNNNNGTG 1 cut(s) 230
PceI AGGCCT 1 cut(s) 274
PspPI GGNCC 1 cut(s) 86
PvuII CAGCTG 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 230
SaqAI TTAA 1 cut(s) 168
Sau3AI GATC 2 cut(s) 60, 118
Sau96I GGNCC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 148
SduI GDGCHC 1 cut(s) 163
SetI ASST 4 cut(s) 80, 143, 192, 213
SinI GGWCC 1 cut(s) 86
SmiMI CAYNNNNRTG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 180
SmoI CTYRAG 1 cut(s) 180
Sse9I AATT 1 cut(s) 41
SseBI AGGCCT 1 cut(s) 274
SspMI CTAG 1 cut(s) 197
StuI AGGCCT 1 cut(s) 274
StyD4I CCNGG 1 cut(s) 146
TaaI ACNGT 1 cut(s) 229
TasI AATT 1 cut(s) 41
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 2 cut(s) 128, 232
TspRI CASTG 2 cut(s) 128, 232
VneI GTGCAC 1 cut(s) 159
VpaK11BI GGWCC 1 cut(s) 86
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.