Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0020079

Physical Location & Seq

Genomic Coordinates Reverse (-)

16336685 .. 16340693

Gene Structure 4009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG172000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGATCGGGCGGCGGTGACGGTGGGGCCGGCGATGGACATGCCGATCATGCACGACAGTGATAGGTACGATTTCGTGAGGGATATCGGGTCCGGGAACTTCGGGGTGGCGAGGCTGATGACGGACAAGCAGACCAAGGAGCTCGTGGCCGTCAAGTATATCGAGCGCGGCAACAAGTCTTCAGTGCTTCATTCACAACCAAAATCTACAGTAGGAACTCCGGCATACATTGCTCCCGAAGTATTACTGAGGCAAGAGTATGATGGAAAGAGAATTCTCAGTGTCCAGTATGCCATTCCAGATTCTGTGCCATTATCTCGTGAATGTCTTGAACTGATATCAAGAATTTTTGTGCCAGACCCTGCTGCGAGAATTACCATTCCTGAAATAAAGAACCACCCATGGTTCTTGAAGAATCTTCCCGCAGATTTGATGGATGAGATGACGATGGGCAACCATTTCGAAGAGCCTGATCAACCGATGCAGAGCATTGATACAATCATGCAAATAATTGCTGAGGCCACTATACCAGCAGTTGGAATCCACAATCTTAGCCCGTACCTGAATGACAATTTTGACATGGACGATGATATGGATGACTTAGATTCGGAATCTGAACTAGATGTTGATAGCAGTGGGGAAATAGTCTATGCTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009755 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

219

Amino Acids

24.5

Weight (kDa)

4.39

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020079)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8180752.1_g000001 Rmu_sc0011974.1_g000001
rosa_samantha	Rh2AG172000 Rh2BG179600 Rh2CG177100 Rh6CG092200 Rh7BG442200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	536
AccII	CGCG	1 cut(s)	168
AciI	CCGC	4 cut(s)	11, 14, 168, 423
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	2 cut(s)	273, 345
AcuI	CTGAAG	1 cut(s)	165
AfaI	GTAC	2 cut(s)	68, 560
AfiI	CCNNNNNNNGG	1 cut(s)	536
AgsI	TTSAA	2 cut(s)	332, 412
AleI	CACNNNNGTG	1 cut(s)	57
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
Alw21I	GWGCWC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	2 cut(s)	305, 362
AoxI	GGCC	3 cut(s)	26, 147, 519
ApeKI	GCWGC	1 cut(s)	365
ApoI	RAATTY	2 cut(s)	273, 345
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	26, 90
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	28
AsuII	TTCGAA	1 cut(s)	462
AvaII	GGWCC	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	144
BauI	CACGAG	2 cut(s)	143, 318
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	144
BbvCI	CCTCAGC	1 cut(s)	516
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	4 cut(s)	28, 257, 427, 442
BceAI	ACGGC	1 cut(s)	134
BcgI	CGANNNNNNTGC	4 cut(s)	22, 56, 442, 476
BclI	TGATCA	1 cut(s)	472
BcnI	CCSGG	1 cut(s)	94
BfaI	CTAG	1 cut(s)	620
BfmI	CTRYAG	1 cut(s)	207
BisI	GCNGC	3 cut(s)	12, 169, 366
BlsI	GCNGC	3 cut(s)	13, 170, 367
Bme1390I	CCNGG	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	2 cut(s)	26, 90
BmiI	GGNNCC	2 cut(s)	27, 91
BmrFI	CCNGG	1 cut(s)	94
BmsI	GCATC	1 cut(s)	471
BpiI	GAAGAC	1 cut(s)	171
Bpu10I	CCTNAGC	1 cut(s)	516
Bpu14I	TTCGAA	1 cut(s)	462
BpuMI	CCSGG	1 cut(s)	94
BsaJI	CCNNGG	2 cut(s)	135, 401
Bsc4I	CCNNNNNNNGG	1 cut(s)	536
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	286
Bse3DI	GCAATG	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	135, 401
BseGI	GGATG	2 cut(s)	442, 601
BseLI	CCNNNNNNNGG	1 cut(s)	536
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	3 cut(s)	239, 292, 507
BseNI	ACTGG	1 cut(s)	286
BseXI	GCAGC	1 cut(s)	352
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	3 cut(s)	28, 149, 521
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	3 cut(s)	29, 93, 221
BslI	CCNNNNNNNGG	1 cut(s)	536
BsnI	GGCC	3 cut(s)	28, 149, 521
Bsp119I	TTCGAA	1 cut(s)	462
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	3 cut(s)	4, 45, 472
Bsp19I	CCATGG	1 cut(s)	401
BspACI	CCGC	4 cut(s)	11, 14, 168, 423
BspANI	GGCC	3 cut(s)	28, 149, 521
BspCNI	CTCAG	3 cut(s)	240, 291, 508
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	27, 91
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	459
BspT104I	TTCGAA	1 cut(s)	462
BsrDI	GCAATG	1 cut(s)	228
BsrFI	RCCGGY	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	286
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	2 cut(s)	135, 401
BssMI	GATC	3 cut(s)	4, 45, 472
BssSI	CACGAG	2 cut(s)	143, 318
BssT1I	CCWWGG	2 cut(s)	135, 401
Bst2BI	CACGAG	2 cut(s)	143, 318
Bst4CI	ACNGT	3 cut(s)	22, 59, 211
Bst6I	CTCTTC	1 cut(s)	459
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstBI	TTCGAA	1 cut(s)	462
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	5 cut(s)	248, 278, 516, 551, 601
BstDSI	CCRYGG	1 cut(s)	401
BstF5I	GGATG	2 cut(s)	442, 601
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	3 cut(s)	7, 48, 475
BstMBI	GATC	3 cut(s)	4, 45, 472
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 230
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	207
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	352
BstV2I	GAAGAC	1 cut(s)	171
BsuRI	GGCC	3 cut(s)	28, 149, 521
BtgI	CCRYGG	1 cut(s)	401
BtgZI	GCGATG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	442, 601
BtsI	GCAGTG	1 cut(s)	640
BtsIMutI	CAGTG	4 cut(s)	64, 189, 286, 640
Cac8I	GCNNGC	1 cut(s)	30
CaiI	CAGNNNCTG	2 cut(s)	305, 362
CfoI	GCGC	1 cut(s)	168
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	26, 90
Csp6I	GTAC	2 cut(s)	67, 559
CviAII	CATG	5 cut(s)	40, 49, 402, 502, 580
CviJI	RGCY	7 cut(s)	28, 115, 142, 149, 469, 521, 555
CviKI_1	RGCY	7 cut(s)	28, 115, 142, 149, 469, 521, 555
CviQI	GTAC	2 cut(s)	67, 559
DdeI	CTNAG	5 cut(s)	248, 278, 516, 551, 601
DpnI	GATC	3 cut(s)	6, 47, 474
DpnII	GATC	3 cut(s)	4, 45, 472
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	2 cut(s)	135, 401
Eco24I	GRGCYC	1 cut(s)	144
Eco32I	GATATC	2 cut(s)	85, 339
Eco47I	GGWCC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	165
EcoICRI	GAGCTC	1 cut(s)	142
EcoRI	GAATTC	1 cut(s)	273
EcoRV	GATATC	2 cut(s)	85, 339
EcoT14I	CCWWGG	2 cut(s)	135, 401
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	2 cut(s)	135, 401
FaeI	CATG	5 cut(s)	43, 52, 405, 505, 583
FatI	CATG	5 cut(s)	39, 48, 401, 501, 579
FauI	CCCGC	1 cut(s)	430
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	3 cut(s)	12, 169, 366
FokI	GGATG	2 cut(s)	449, 608
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	3 cut(s)	12, 169, 366
FspBI	CTAG	1 cut(s)	620
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	3 cut(s)	12, 169, 366
HaeIII	GGCC	3 cut(s)	28, 149, 521
HapII	CCGG	3 cut(s)	29, 93, 221
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	5 cut(s)	43, 52, 405, 505, 583
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	5 cut(s)	302, 415, 540, 605, 611
HpaII	CCGG	3 cut(s)	29, 93, 221
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	2 cut(s)	610, 616
Hpy188III	TCNNGA	8 cut(s)	76, 236, 299, 320, 329, 342, 383, 409
HpyCH4III	ACNGT	3 cut(s)	22, 59, 211
HpyCH4V	TGCA	3 cut(s)	52, 484, 505
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 230
HpyF3I	CTNAG	5 cut(s)	248, 278, 516, 551, 601
Hsp92II	CATG	5 cut(s)	43, 52, 405, 505, 583
HspAI	GCGC	1 cut(s)	166
KroI	GCCGGC	1 cut(s)	28
KroNI	GCCGGC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	3 cut(s)	4, 45, 472
LguI	GCTCTTC	1 cut(s)	459
LmnI	GCTCC	2 cut(s)	139, 238
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	1 cut(s)	471
MaeI	CTAG	1 cut(s)	620
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	3 cut(s)	6, 47, 474
MboI	GATC	3 cut(s)	4, 45, 472
MboII	GAAGA	4 cut(s)	171, 410, 424, 476
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	5 cut(s)	273, 345, 372, 510, 571
MmeI	TCCRAC	1 cut(s)	517
MnlI	CCTC	4 cut(s)	72, 105, 243, 511
MroNI	GCCGGC	1 cut(s)	28
MseI	TTAA	1 cut(s)	658
MslI	CAYNNNNRTG	1 cut(s)	57
MspI	CCGG	3 cut(s)	29, 93, 221
MspR9I	CCNGG	1 cut(s)	94
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	49, 230
NaeI	GCCGGC	1 cut(s)	30
NciI	CCSGG	1 cut(s)	94
NcoI	CCATGG	1 cut(s)	401
NdeII	GATC	3 cut(s)	4, 45, 472
NgoMIV	GCCGGC	1 cut(s)	28
NlaIII	CATG	5 cut(s)	43, 52, 405, 505, 583
NlaIV	GGNNCC	2 cut(s)	27, 91
NmuCI	GTSAC	1 cut(s)	16
NspI	RCATGY	1 cut(s)	43
NspV	TTCGAA	1 cut(s)	462
OliI	CACNNNNGTG	1 cut(s)	57
PciSI	GCTCTTC	1 cut(s)	459
PdiI	GCCGGC	1 cut(s)	30
PfeI	GAWTC	5 cut(s)	302, 415, 540, 605, 611
PflMI	CCANNNNNTGG	1 cut(s)	536
PfoI	TCCNGGA	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	13, 170, 367
Psp124BI	GAGCTC	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	27, 91
PspPI	GGNCC	2 cut(s)	26, 90
PstNI	CAGNNNCTG	2 cut(s)	305, 362
RsaI	GTAC	2 cut(s)	68, 560
RsaNI	GTAC	2 cut(s)	67, 559
RseI	CAYNNNNRTG	1 cut(s)	57
SacI	GAGCTC	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	459
SaqAI	TTAA	1 cut(s)	658
SatI	GCNGC	3 cut(s)	12, 169, 366
Sau3AI	GATC	3 cut(s)	4, 45, 472
Sau96I	GGNCC	2 cut(s)	26, 90
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	3 cut(s)	68, 144, 564
SfaNI	GCATC	1 cut(s)	471
SfcI	CTRYAG	1 cut(s)	207
SfuI	TTCGAA	1 cut(s)	462
SinI	GGWCC	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	57
Sse9I	AATT	5 cut(s)	273, 345, 372, 510, 571
SsiI	CCGC	4 cut(s)	11, 14, 168, 423
SspMI	CTAG	1 cut(s)	620
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	92
StyI	CCWWGG	2 cut(s)	135, 401
TaaI	ACNGT	3 cut(s)	22, 59, 211
TaqI	TCGA	2 cut(s)	162, 462
TasI	AATT	5 cut(s)	273, 345, 372, 510, 571
TauI	GCSGC	2 cut(s)	14, 171
TfiI	GAWTC	5 cut(s)	302, 415, 540, 605, 611
Tru1I	TTAA	1 cut(s)	658
Tru9I	TTAA	1 cut(s)	658
TscAI	CASTG	4 cut(s)	64, 189, 286, 640
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	1 cut(s)	365
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	179
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	4 cut(s)	64, 189, 286, 640
Van91I	CCANNNNNTGG	1 cut(s)	536
VpaK11BI	GGWCC	1 cut(s)	90
XapI	RAATTY	2 cut(s)	273, 345
XceI	RCATGY	1 cut(s)	43
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142
XspI	CTAG	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.