Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0020079

Physical Location & Seq

Genomic Coordinates Reverse (-)

16207384 .. 16211374

Gene Structure 3991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG177100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGATCGGGCGGCGGTGACGGTGGGGCCGGCGATGGACATGCCGATCATGCACGACAGTGATAGGTACGATTTCGTGAGGGATATCGGGTCCGGGAACTTCGGGGTGGCGAGGCTGATGAGGGACAAGCAGACCAAGGAGCTCGTGGCCGTCAAGTATATCGAGCGCGGCAACAAGTCTTCAGTGCTTCATTCACAACCAAAATCTACAGTAGGAACTCCGGCATACATTGCTCCTGAAGTATTACTGAGGCAAGAGTATGATGGAAAGAGAATTACCATTCCTGAAATAAAGAACCACCCATGGTTCTTGAAGAATCTTCCCGCAGATTTGATGGACGAGATGACGATGGGCAACCATTTCGAAGAGCCTGATCAACCAATGCAGAGCATTGATACAATCATGCAAATAATTGCTGAGGCCACTATACCAGCAGTTGGAATCCACAATCTTAGCCCGTACCTGAATGACAATTATGACATGGACGATGATATGGATGACTTAGATTCGGAATCTGAACTAGATGTTGATAGCAGTGGGGAAATAGTCTATGCTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009755 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

186

Amino Acids

20.92

Weight (kDa)

4.41

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020079)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8180752.1_g000001 Rmu_sc0011974.1_g000001
rosa_samantha	Rh2AG172000 Rh2BG179600 Rh2CG177100 Rh6CG092200 Rh7BG442200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	437
AccII	CGCG	1 cut(s)	168
AciI	CCGC	4 cut(s)	11, 14, 168, 324
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	147
AcuI	CTGAAG	2 cut(s)	165, 258
AfaI	GTAC	2 cut(s)	68, 461
AfiI	CCNNNNNNNGG	1 cut(s)	437
AgsI	TTSAA	1 cut(s)	313
AleI	CACNNNNGTG	1 cut(s)	57
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
Alw21I	GWGCWC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	3 cut(s)	26, 147, 420
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	26, 90
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	28
AsuII	TTCGAA	1 cut(s)	363
AvaII	GGWCC	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	144
BauI	CACGAG	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	144
BbvCI	CCTCAGC	1 cut(s)	417
BccI	CCATC	4 cut(s)	28, 257, 328, 343
BceAI	ACGGC	1 cut(s)	134
BcgI	CGANNNNNNTGC	4 cut(s)	22, 56, 343, 377
BclI	TGATCA	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	94
BfaI	CTAG	1 cut(s)	521
BfmI	CTRYAG	1 cut(s)	207
BisI	GCNGC	2 cut(s)	12, 169
BlsI	GCNGC	2 cut(s)	13, 170
Bme1390I	CCNGG	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	2 cut(s)	26, 90
BmiI	GGNNCC	2 cut(s)	27, 91
BmrFI	CCNGG	1 cut(s)	94
BpiI	GAAGAC	1 cut(s)	171
Bpu10I	CCTNAGC	1 cut(s)	417
Bpu14I	TTCGAA	1 cut(s)	363
BpuMI	CCSGG	1 cut(s)	94
BsaJI	CCNNGG	2 cut(s)	135, 302
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse118I	RCCGGY	1 cut(s)	28
Bse3DI	GCAATG	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	135, 302
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	2 cut(s)	239, 408
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	3 cut(s)	28, 149, 422
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	3 cut(s)	29, 93, 221
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	3 cut(s)	28, 149, 422
Bsp119I	TTCGAA	1 cut(s)	363
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	3 cut(s)	4, 45, 373
Bsp19I	CCATGG	1 cut(s)	302
BspACI	CCGC	4 cut(s)	11, 14, 168, 324
BspANI	GGCC	3 cut(s)	28, 149, 422
BspCNI	CTCAG	2 cut(s)	240, 409
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	27, 91
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	360
BspT104I	TTCGAA	1 cut(s)	363
BsrDI	GCAATG	1 cut(s)	228
BsrFI	RCCGGY	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	2 cut(s)	135, 302
BssMI	GATC	3 cut(s)	4, 45, 373
BssSI	CACGAG	1 cut(s)	143
BssT1I	CCWWGG	2 cut(s)	135, 302
Bst2BI	CACGAG	1 cut(s)	143
Bst4CI	ACNGT	3 cut(s)	22, 59, 211
Bst6I	CTCTTC	1 cut(s)	360
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstBI	TTCGAA	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	4 cut(s)	248, 417, 452, 502
BstDSI	CCRYGG	1 cut(s)	302
BstF5I	GGATG	1 cut(s)	502
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	3 cut(s)	7, 48, 376
BstMBI	GATC	3 cut(s)	4, 45, 373
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 230
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	207
BstUI	CGCG	1 cut(s)	168
BstV2I	GAAGAC	1 cut(s)	171
BsuRI	GGCC	3 cut(s)	28, 149, 422
BtgI	CCRYGG	1 cut(s)	302
BtgZI	GCGATG	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	502
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	3 cut(s)	64, 189, 541
Cac8I	GCNNGC	1 cut(s)	30
CfoI	GCGC	1 cut(s)	168
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	26, 90
Csp6I	GTAC	2 cut(s)	67, 460
CviAII	CATG	5 cut(s)	40, 49, 303, 403, 481
CviJI	RGCY	7 cut(s)	28, 115, 142, 149, 370, 422, 456
CviKI_1	RGCY	7 cut(s)	28, 115, 142, 149, 370, 422, 456
CviQI	GTAC	2 cut(s)	67, 460
DdeI	CTNAG	4 cut(s)	248, 417, 452, 502
DpnI	GATC	3 cut(s)	6, 47, 375
DpnII	GATC	3 cut(s)	4, 45, 373
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	2 cut(s)	135, 302
Eco24I	GRGCYC	1 cut(s)	144
Eco32I	GATATC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	2 cut(s)	165, 258
EcoICRI	GAGCTC	1 cut(s)	142
EcoRV	GATATC	1 cut(s)	85
EcoT14I	CCWWGG	2 cut(s)	135, 302
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	2 cut(s)	135, 302
FaeI	CATG	5 cut(s)	43, 52, 306, 406, 484
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	5 cut(s)	39, 48, 302, 402, 480
FauI	CCCGC	1 cut(s)	331
FbaI	TGATCA	1 cut(s)	373
Fnu4HI	GCNGC	2 cut(s)	12, 169
FokI	GGATG	1 cut(s)	509
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	2 cut(s)	12, 169
FspBI	CTAG	1 cut(s)	521
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	2 cut(s)	12, 169
HaeIII	GGCC	3 cut(s)	28, 149, 422
HapII	CCGG	3 cut(s)	29, 93, 221
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	5 cut(s)	43, 52, 306, 406, 484
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	4 cut(s)	316, 441, 506, 512
HpaII	CCGG	3 cut(s)	29, 93, 221
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	2 cut(s)	511, 517
Hpy188III	TCNNGA	4 cut(s)	76, 236, 284, 310
HpyCH4III	ACNGT	3 cut(s)	22, 59, 211
HpyCH4V	TGCA	3 cut(s)	52, 385, 406
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 230
HpyF3I	CTNAG	4 cut(s)	248, 417, 452, 502
Hsp92II	CATG	5 cut(s)	43, 52, 306, 406, 484
HspAI	GCGC	1 cut(s)	166
KroI	GCCGGC	1 cut(s)	28
KroNI	GCCGGC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	3 cut(s)	4, 45, 373
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	2 cut(s)	139, 238
LpnPI	CCDG	8 cut(s)	42, 106, 234, 249, 297, 384, 444, 476
MaeI	CTAG	1 cut(s)	521
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	3 cut(s)	6, 47, 375
MboI	GATC	3 cut(s)	4, 45, 373
MboII	GAAGA	4 cut(s)	171, 311, 325, 377
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	3 cut(s)	273, 411, 472
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	5 cut(s)	72, 105, 114, 243, 412
MroNI	GCCGGC	1 cut(s)	28
MseI	TTAA	1 cut(s)	559
MslI	CAYNNNNRTG	1 cut(s)	57
MspI	CCGG	3 cut(s)	29, 93, 221
MspR9I	CCNGG	1 cut(s)	94
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	49, 230
NaeI	GCCGGC	1 cut(s)	30
NciI	CCSGG	1 cut(s)	94
NcoI	CCATGG	1 cut(s)	302
NdeII	GATC	3 cut(s)	4, 45, 373
NgoMIV	GCCGGC	1 cut(s)	28
NlaIII	CATG	5 cut(s)	43, 52, 306, 406, 484
NlaIV	GGNNCC	2 cut(s)	27, 91
NmuCI	GTSAC	1 cut(s)	16
NspI	RCATGY	1 cut(s)	43
NspV	TTCGAA	1 cut(s)	363
OliI	CACNNNNGTG	1 cut(s)	57
PciSI	GCTCTTC	1 cut(s)	360
PdiI	GCCGGC	1 cut(s)	30
PfeI	GAWTC	4 cut(s)	316, 441, 506, 512
PflMI	CCANNNNNTGG	1 cut(s)	437
PfoI	TCCNGGA	1 cut(s)	92
PkrI	GCNGC	2 cut(s)	13, 170
Psp124BI	GAGCTC	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	27, 91
PspPI	GGNCC	2 cut(s)	26, 90
RsaI	GTAC	2 cut(s)	68, 461
RsaNI	GTAC	2 cut(s)	67, 460
RseI	CAYNNNNRTG	1 cut(s)	57
SacI	GAGCTC	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	559
SatI	GCNGC	2 cut(s)	12, 169
Sau3AI	GATC	3 cut(s)	4, 45, 373
Sau96I	GGNCC	2 cut(s)	26, 90
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	3 cut(s)	68, 144, 465
SfcI	CTRYAG	1 cut(s)	207
SfuI	TTCGAA	1 cut(s)	363
SinI	GGWCC	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	57
Sse9I	AATT	3 cut(s)	273, 411, 472
SsiI	CCGC	4 cut(s)	11, 14, 168, 324
SspMI	CTAG	1 cut(s)	521
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	92
StyI	CCWWGG	2 cut(s)	135, 302
TaaI	ACNGT	3 cut(s)	22, 59, 211
TaqI	TCGA	2 cut(s)	162, 363
TasI	AATT	3 cut(s)	273, 411, 472
TauI	GCSGC	2 cut(s)	14, 171
TfiI	GAWTC	4 cut(s)	316, 441, 506, 512
Tru1I	TTAA	1 cut(s)	559
Tru9I	TTAA	1 cut(s)	559
TscAI	CASTG	3 cut(s)	64, 189, 541
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	179
TspRI	CASTG	3 cut(s)	64, 189, 541
Van91I	CCANNNNNTGG	1 cut(s)	437
VpaK11BI	GGWCC	1 cut(s)	90
XceI	RCATGY	1 cut(s)	43
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142
XspI	CTAG	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.