Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0020079

Physical Location & Seq

Genomic Coordinates Forward (+)

51093398 .. 51104810

Gene Structure 11413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG442200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGAGAAGTATGAGGTTGTGAAAGATATTGGGTCTGGGAATTTTGGTGTAGCAAGGCTGGTCAGAGACAAGAATACCCAAGAACTCTTAGCTGTTAAGTTCATTGAGAGAGGCCTTAAGGAAAAAGGTGAAAGAATCCACTCTTTTTCAAACCCACAAGCTTCACAGCCCCATCAACCCATCAAAAACCCGAATCAGAGCCTGAATGTCCACAAACACAGTGTTGCAAATCTCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

79

Amino Acids

8.92

Weight (kDa)

9.7

Isoelectric Point (pI)

23.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020079)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8180752.1_g000001 Rmu_sc0011974.1_g000001
rosa_samantha	Rh2AG172000 Rh2BG179600 Rh2CG177100 Rh6CG092200 Rh7BG442200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	40
AflII	CTTAAG	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	150
AluBI	AGCT	2 cut(s)	92, 161
AluI	AGCT	2 cut(s)	92, 161
Alw26I	GTCTC	1 cut(s)	60
AlwNI	CAGNNNCTG	1 cut(s)	202
AoxI	GGCC	1 cut(s)	112
ApoI	RAATTY	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	140
BccI	CCATC	2 cut(s)	180, 188
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	1 cut(s)	238
BfrI	CTTAAG	1 cut(s)	116
BshFI	GGCC	1 cut(s)	114
BsmAI	GTCTC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	114
BspANI	GGCC	1 cut(s)	114
BspTI	CTTAAG	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	221
BstAFI	CTTAAG	1 cut(s)	116
BstDEI	CTNAG	1 cut(s)	88
BstMAI	GTCTC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	226
CaiI	CAGNNNCTG	1 cut(s)	202
CviJI	RGCY	6 cut(s)	58, 92, 114, 161, 169, 201
CviKI_1	RGCY	6 cut(s)	58, 92, 114, 161, 169, 201
DdeI	CTNAG	1 cut(s)	88
Eco147I	AGGCCT	1 cut(s)	114
FaiI	YATR	1 cut(s)	12
FspBI	CTAG	1 cut(s)	238
HaeIII	GGCC	1 cut(s)	114
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	2 cut(s)	135, 193
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	65, 198
Hpy8I	GTNNAC	1 cut(s)	211
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4V	TGCA	1 cut(s)	227
HpyF3I	CTNAG	1 cut(s)	88
LpnPI	CCDG	3 cut(s)	21, 44, 215
MaeI	CTAG	1 cut(s)	238
MluCI	AATT	1 cut(s)	40
MnlI	CCTC	2 cut(s)	7, 104
MseI	TTAA	2 cut(s)	96, 117
MspCI	CTTAAG	1 cut(s)	116
PceI	AGGCCT	1 cut(s)	114
PfeI	GAWTC	2 cut(s)	135, 193
PstNI	CAGNNNCTG	1 cut(s)	202
SaqAI	TTAA	2 cut(s)	96, 117
SetI	ASST	4 cut(s)	18, 94, 130, 163
SgeI	CNNG	8 cut(s)	48, 66, 71, 82, 92, 170, 202, 214
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	1 cut(s)	40
SseBI	AGGCCT	1 cut(s)	114
SspMI	CTAG	1 cut(s)	238
StuI	AGGCCT	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	221
TasI	AATT	1 cut(s)	40
TfiI	GAWTC	2 cut(s)	135, 193
Tru1I	TTAA	2 cut(s)	96, 117
Tru9I	TTAA	2 cut(s)	96, 117
TscAI	CASTG	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	91
TspRI	CASTG	1 cut(s)	226
Vha464I	CTTAAG	1 cut(s)	116
XapI	RAATTY	1 cut(s)	40
XspI	CTAG	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.