Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0020079

Physical Location & Seq

Genomic Coordinates Reverse (-)

15940591 .. 15940794

Gene Structure 204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG179600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGATCGGGCGGCGGTGACGGTGGGGCCGGCGATGGACATGCCGATCATGCACGACAGTGATAGGTACGATTTCGTGAGGGATATCGGGTCCGGGAACTTCGGGGTGGCGAGGCTGATGACGGACAAGCAGACCAAGGAGCTCGTGGCCGTCAAGTATATCGAGCGCGGCAACAAGGTCAGTTTCGGAATTTCAAATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009755 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

67

Amino Acids

7.44

Weight (kDa)

6.54

Isoelectric Point (pI)

30.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020079)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8180752.1_g000001 Rmu_sc0011974.1_g000001
rosa_samantha	Rh2AG172000 Rh2BG179600 Rh2CG177100 Rh6CG092200 Rh7BG442200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	168
AciI	CCGC	3 cut(s)	11, 14, 168
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	189
AfaI	GTAC	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	195
AleI	CACNNNNGTG	1 cut(s)	57
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
Alw21I	GWGCWC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	26, 147
ApoI	RAATTY	1 cut(s)	189
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	26, 90
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	144
BauI	CACGAG	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	144
BccI	CCATC	1 cut(s)	28
BceAI	ACGGC	1 cut(s)	134
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BcnI	CCSGG	1 cut(s)	94
BfmI	CTRYAG	1 cut(s)	200
BisI	GCNGC	2 cut(s)	12, 169
BlsI	GCNGC	2 cut(s)	13, 170
Bme1390I	CCNGG	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	2 cut(s)	26, 90
BmiI	GGNNCC	2 cut(s)	27, 91
BmrFI	CCNGG	1 cut(s)	94
BpuMI	CCSGG	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	135
Bse118I	RCCGGY	1 cut(s)	28
BseDI	CCNNGG	1 cut(s)	135
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	28, 149
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	2 cut(s)	29, 93
BsnI	GGCC	2 cut(s)	28, 149
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	4, 45
BspACI	CCGC	3 cut(s)	11, 14, 168
BspANI	GGCC	2 cut(s)	28, 149
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	27, 91
BspPI	GGATC	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	2 cut(s)	4, 45
BssSI	CACGAG	1 cut(s)	143
BssT1I	CCWWGG	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	143
Bst4CI	ACNGT	2 cut(s)	22, 59
BstC8I	GCNNGC	1 cut(s)	30
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	2 cut(s)	7, 48
BstMBI	GATC	2 cut(s)	4, 45
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	200
BstUI	CGCG	1 cut(s)	168
BsuRI	GGCC	2 cut(s)	28, 149
BtgZI	GCGATG	1 cut(s)	47
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	30
CfoI	GCGC	1 cut(s)	168
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	26, 90
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	2 cut(s)	40, 49
CviJI	RGCY	4 cut(s)	28, 115, 142, 149
CviKI_1	RGCY	4 cut(s)	28, 115, 142, 149
CviQI	GTAC	1 cut(s)	67
DpnI	GATC	2 cut(s)	6, 47
DpnII	GATC	2 cut(s)	4, 45
EaeI	YGGCCR	1 cut(s)	147
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	144
Eco32I	GATATC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	142
EcoRV	GATATC	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	2 cut(s)	43, 52
FaiI	YATR	3 cut(s)	41, 50, 159
FatI	CATG	2 cut(s)	39, 48
Fnu4HI	GCNGC	2 cut(s)	12, 169
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	2 cut(s)	12, 169
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	2 cut(s)	12, 169
HaeIII	GGCC	2 cut(s)	28, 149
HapII	CCGG	2 cut(s)	29, 93
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	2 cut(s)	43, 52
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HpaII	CCGG	2 cut(s)	29, 93
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	188
Hpy188III	TCNNGA	1 cut(s)	76
HpyCH4III	ACNGT	2 cut(s)	22, 59
HpyCH4V	TGCA	1 cut(s)	52
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
Hsp92II	CATG	2 cut(s)	43, 52
HspAI	GCGC	1 cut(s)	166
KroI	GCCGGC	1 cut(s)	28
KroNI	GCCGGC	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	4, 45
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	2 cut(s)	42, 106
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	2 cut(s)	6, 47
MboI	GATC	2 cut(s)	4, 45
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	1 cut(s)	189
MnlI	CCTC	2 cut(s)	72, 105
MroNI	GCCGGC	1 cut(s)	28
MslI	CAYNNNNRTG	1 cut(s)	57
MspI	CCGG	2 cut(s)	29, 93
MspR9I	CCNGG	1 cut(s)	94
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	49
NaeI	GCCGGC	1 cut(s)	30
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	2 cut(s)	4, 45
NgoMIV	GCCGGC	1 cut(s)	28
NlaIII	CATG	2 cut(s)	43, 52
NlaIV	GGNNCC	2 cut(s)	27, 91
NmuCI	GTSAC	1 cut(s)	16
NspI	RCATGY	1 cut(s)	43
OliI	CACNNNNGTG	1 cut(s)	57
PdiI	GCCGGC	1 cut(s)	30
PfoI	TCCNGGA	1 cut(s)	92
PkrI	GCNGC	2 cut(s)	13, 170
Psp124BI	GAGCTC	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	27, 91
PspPI	GGNCC	2 cut(s)	26, 90
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	57
SacI	GAGCTC	1 cut(s)	144
SatI	GCNGC	2 cut(s)	12, 169
Sau3AI	GATC	2 cut(s)	4, 45
Sau96I	GGNCC	2 cut(s)	26, 90
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	3 cut(s)	68, 144, 180
SfcI	CTRYAG	1 cut(s)	200
SinI	GGWCC	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	57
Sse9I	AATT	1 cut(s)	189
SsiI	CCGC	3 cut(s)	11, 14, 168
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	2 cut(s)	22, 59
TaqI	TCGA	1 cut(s)	162
TasI	AATT	1 cut(s)	189
TauI	GCSGC	2 cut(s)	14, 171
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	90
XapI	RAATTY	1 cut(s)	189
XceI	RCATGY	1 cut(s)	43
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.