Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0020079

Physical Location & Seq

Genomic Coordinates Forward (+)

10160080 .. 10164059

Gene Structure 3980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG092200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGATCGTTCTATGCTCACAGTTGGGCCCGGTATGGATATGCCGATCATGCATGACAGCGATCGGTACGAGCTGGTTAAAGATATCGGGTCGGGTAATTTTGGGGTGGCGAGGCTCATGAGGGACAAGCAGACTGAGGAGCTTGTTGCTGTGAAATACATAGAGAGAGGTGAGAAGTCTTCGGTGCTACATTCCCAACCAAAATCAACTGTTGGCACCCCTGCATATATTGCTCCCGAAGTGTTACTTAAGAAAGAATATGATGGCAAGAGGATAACAATTCCTGAAATTAGGAACCATGAGTGGTTTCTAAAAAACCTTCCAGCAGATCTCATGGTTGAAAACACGATGAACAGCCAGTTTGAAGAGCCTGATCAACCCATGCAAAGCATAGATGAGATCATGCAGATAATTGCTGAGGCTACAATACCGGCGGCTGGGACCAACAATCTCAACCAGTATCTTGCTGGCAGCCTGGACATCGACAACATGGAGGAGGATCTTGATACAGATCCTGACGACCTTGACATCGACAGCAGCGGGGAAATAGTCTATGCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

187

Amino Acids

20.96

Weight (kDa)

4.29

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020079)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8180752.1_g000001 Rmu_sc0011974.1_g000001
rosa_samantha	Rh2AG172000 Rh2BG179600 Rh2CG177100 Rh6CG092200 Rh7BG442200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	215
AciI	CCGC	2 cut(s)	434, 540
AclWI	GGATC	3 cut(s)	12, 506, 507
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	437
AflII	CTTAAG	1 cut(s)	248
AgsI	TTSAA	2 cut(s)	341, 365
AjnI	CCWGG	1 cut(s)	474
AluBI	AGCT	2 cut(s)	73, 142
AluI	AGCT	2 cut(s)	73, 142
AlwI	GGATC	3 cut(s)	12, 506, 507
AlwNI	CAGNNNCTG	1 cut(s)	515
AoxI	GGCC	1 cut(s)	26
ApaI	GGGCCC	1 cut(s)	30
ApeKI	GCWGC	2 cut(s)	471, 537
AspS9I	GGNCC	3 cut(s)	26, 27, 441
AsuC2I	CCSGG	1 cut(s)	30
AsuHPI	GGTGA	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	441
BaeGI	GKGCMC	1 cut(s)	30
BanI	GGYRCC	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	171
BbvCI	CCTCAGC	1 cut(s)	417
BbvI	GCAGC	2 cut(s)	483, 549
BccI	CCATC	1 cut(s)	257
BciT130I	CCWGG	1 cut(s)	476
BclI	TGATCA	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	30
BfrI	CTTAAG	1 cut(s)	248
BglII	AGATCT	1 cut(s)	328
BisI	GCNGC	3 cut(s)	435, 472, 538
BlsI	GCNGC	3 cut(s)	436, 473, 539
Bme1390I	CCNGG	2 cut(s)	30, 476
Bme18I	GGWCC	1 cut(s)	441
BmgT120I	GGNCC	3 cut(s)	26, 27, 441
BmiI	GGNNCC	4 cut(s)	28, 217, 296, 442
BmrFI	CCNGG	2 cut(s)	30, 476
BpiI	GAAGAC	1 cut(s)	171
Bpu10I	CCTNAGC	1 cut(s)	417
BpuMI	CCSGG	1 cut(s)	30
BsaBI	GATNNNNATC	1 cut(s)	510
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse118I	RCCGGY	1 cut(s)	430
Bse1I	ACTGG	2 cut(s)	358, 457
Bse8I	GATNNNNATC	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	476
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMII	CTCAG	2 cut(s)	126, 408
BseNI	ACTGG	2 cut(s)	358, 457
BseRI	GAGGAG	2 cut(s)	152, 509
BseSI	GKGCMC	1 cut(s)	30
BseXI	GCAGC	2 cut(s)	483, 549
BseYI	CCCAGC	1 cut(s)	437
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	28
BshNI	GGYRCC	1 cut(s)	215
BsiEI	CGRYCG	1 cut(s)	64
BsiSI	CCGG	2 cut(s)	30, 431
BslFI	GGGAC	2 cut(s)	137, 454
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmFI	GGGAC	2 cut(s)	137, 454
BsnI	GGCC	1 cut(s)	28
Bsp120I	GGGCCC	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	8 cut(s)	4, 45, 61, 328, 373, 399, 499, 511
BspACI	CCGC	2 cut(s)	434, 540
BspANI	GGCC	1 cut(s)	28
BspCNI	CTCAG	2 cut(s)	127, 409
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	4 cut(s)	28, 217, 296, 442
BspPI	GGATC	3 cut(s)	12, 506, 507
BspQI	GCTCTTC	1 cut(s)	360
BspT107I	GGYRCC	1 cut(s)	215
BspTI	CTTAAG	1 cut(s)	248
BsrFI	RCCGGY	1 cut(s)	430
BsrI	ACTGG	2 cut(s)	358, 457
BssAI	RCCGGY	1 cut(s)	430
BssMI	GATC	8 cut(s)	4, 45, 61, 328, 373, 399, 499, 511
Bst2UI	CCWGG	1 cut(s)	476
Bst4CI	ACNGT	2 cut(s)	22, 211
Bst6I	CTCTTC	1 cut(s)	360
BstAFI	CTTAAG	1 cut(s)	248
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	469
BstDEI	CTNAG	2 cut(s)	135, 417
BstKTI	GATC	8 cut(s)	7, 48, 64, 331, 376, 402, 502, 514
BstMBI	GATC	8 cut(s)	4, 45, 61, 328, 373, 399, 499, 511
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 230
BstNI	CCWGG	1 cut(s)	476
BstSCI	CCNGG	2 cut(s)	28, 474
BstSLI	GKGCMC	1 cut(s)	30
BstV1I	GCAGC	2 cut(s)	483, 549
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	3 cut(s)	328, 499, 511
BstYI	RGATCY	3 cut(s)	328, 499, 511
BsuRI	GGCC	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	469
CaiI	CAGNNNCTG	1 cut(s)	515
CciI	TCATGA	1 cut(s)	117
Cfr10I	RCCGGY	1 cut(s)	430
Cfr13I	GGNCC	3 cut(s)	26, 27, 441
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	8 cut(s)	49, 53, 118, 299, 334, 382, 403, 490
CviJI	RGCY	9 cut(s)	28, 73, 115, 142, 357, 370, 422, 437, 474
CviKI_1	RGCY	9 cut(s)	28, 73, 115, 142, 357, 370, 422, 437, 474
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	2 cut(s)	135, 417
DpnI	GATC	8 cut(s)	6, 47, 63, 330, 375, 401, 501, 513
DpnII	GATC	8 cut(s)	4, 45, 61, 328, 373, 399, 499, 511
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco24I	GRGCYC	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	441
EcoRII	CCWGG	1 cut(s)	474
EcoRV	GATATC	1 cut(s)	85
EcoT22I	ATGCAT	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	30
FaeI	CATG	8 cut(s)	52, 56, 121, 302, 337, 385, 406, 493
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FaqI	GGGAC	2 cut(s)	137, 454
FatI	CATG	8 cut(s)	48, 52, 117, 298, 333, 381, 402, 489
FauI	CCCGC	1 cut(s)	533
FbaI	TGATCA	1 cut(s)	373
Fnu4HI	GCNGC	3 cut(s)	435, 472, 538
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	3 cut(s)	435, 472, 538
GluI	GCNGC	3 cut(s)	435, 472, 538
GsaI	CCCAGC	1 cut(s)	441
HaeIII	GGCC	1 cut(s)	28
HapII	CCGG	2 cut(s)	30, 431
Hin1II	CATG	8 cut(s)	52, 56, 121, 302, 337, 385, 406, 493
HpaII	CCGG	2 cut(s)	30, 431
HphI	GGTGA	1 cut(s)	182
Hpy188III	TCNNGA	5 cut(s)	118, 236, 284, 503, 515
HpyAV	CCTTC	1 cut(s)	329
HpyCH4III	ACNGT	2 cut(s)	22, 211
HpyCH4V	TGCA	5 cut(s)	52, 224, 385, 406, 557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 230
HpyF3I	CTNAG	2 cut(s)	135, 417
Hsp92II	CATG	8 cut(s)	52, 56, 121, 302, 337, 385, 406, 493
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	8 cut(s)	4, 45, 61, 328, 373, 399, 499, 511
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	2 cut(s)	139, 238
Lsp1109I	GCAGC	2 cut(s)	483, 549
MaeIII	GTNAC	1 cut(s)	243
MalI	GATC	8 cut(s)	6, 47, 63, 330, 375, 401, 501, 513
MboI	GATC	8 cut(s)	4, 45, 61, 328, 373, 399, 499, 511
MboII	GAAGA	2 cut(s)	171, 377
MflI	RGATCY	3 cut(s)	328, 499, 511
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	5 cut(s)	97, 279, 288, 411, 558
MnlI	CCTC	8 cut(s)	105, 114, 130, 161, 264, 412, 487, 490
Mph1103I	ATGCAT	1 cut(s)	54
MseI	TTAA	2 cut(s)	78, 249
MspA1I	CMGCKG	1 cut(s)	540
MspCI	CTTAAG	1 cut(s)	248
MspI	CCGG	2 cut(s)	30, 431
MspR9I	CCNGG	2 cut(s)	30, 476
MvaI	CCWGG	1 cut(s)	476
MwoI	GCNNNNNNNGC	2 cut(s)	49, 230
NciI	CCSGG	1 cut(s)	30
NdeII	GATC	8 cut(s)	4, 45, 61, 328, 373, 399, 499, 511
NlaIII	CATG	8 cut(s)	52, 56, 121, 302, 337, 385, 406, 493
NlaIV	GGNNCC	4 cut(s)	28, 217, 296, 442
NsiI	ATGCAT	1 cut(s)	54
PagI	TCATGA	1 cut(s)	117
PciSI	GCTCTTC	1 cut(s)	360
PkrI	GCNGC	3 cut(s)	436, 473, 539
Ple19I	CGATCG	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	474
PspFI	CCCAGC	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	474
PspN4I	GGNNCC	4 cut(s)	28, 217, 296, 442
PspOMI	GGGCCC	1 cut(s)	26
PspPI	GGNCC	3 cut(s)	26, 27, 441
PstNI	CAGNNNCTG	1 cut(s)	515
PsuI	RGATCY	3 cut(s)	328, 499, 511
PvuI	CGATCG	1 cut(s)	64
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	2 cut(s)	78, 249
SatI	GCNGC	3 cut(s)	435, 472, 538
Sau3AI	GATC	8 cut(s)	4, 45, 61, 328, 373, 399, 499, 511
Sau96I	GGNCC	3 cut(s)	26, 27, 441
ScrFI	CCNGG	2 cut(s)	30, 476
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	5 cut(s)	75, 144, 172, 321, 525
SinI	GGWCC	1 cut(s)	441
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	5 cut(s)	97, 279, 288, 411, 558
SsiI	CCGC	2 cut(s)	434, 540
StyD4I	CCNGG	2 cut(s)	28, 474
TaaI	ACNGT	2 cut(s)	22, 211
TaqI	TCGA	2 cut(s)	483, 531
TasI	AATT	5 cut(s)	97, 279, 288, 411, 558
TauI	GCSGC	1 cut(s)	437
Tru1I	TTAA	2 cut(s)	78, 249
Tru9I	TTAA	2 cut(s)	78, 249
TseI	GCWGC	2 cut(s)	471, 537
TspDTI	ATGAA	1 cut(s)	365
Vha464I	CTTAAG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	441
XcmI	CCANNNNNNNNNTGG	1 cut(s)	464
Zsp2I	ATGCAT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.