Rh2AG253100

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0018568
Physical Location & Seq
Forward (+)
28753998 .. 28771995
17998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG253100.1

Sequence Viewer

Length: 624 bp
ATGATCAAGCATGGCCTGGGAGCCTTGGCGAATGTTTGGGTCGAAGAAGGAGAGGTGATCGGTGGTGTTTGGAAGCGAATACAAGCGAAACGTTTCAGGGTTTCGAAGTTGAACAAACGTCTCGGAGAGTGTCTCGAAGGCCTAGGCAAGATTGGTGTTAGTAAACAACCGATGTTAGTCATGTCACAGAACAATTTGGCAGGGCCACCTTCAGCTATGAGGTTCTCCAAGGCTTTGAAACTGTTTGGGTCGAAGAAGAAGAGCTGTGGAGGACCAATCAATCATCTTTCAACTTCAGAACCTATGATCGATCAACATTTTGTGGGAAAGTCAAAGGTTAGCAGCAAGGTCTTAGTAAAGAGAACCATGCAAGAACTTGGTGACATCGAGATATTTCAGATTGAGACTGAAATTGAGGAACCACAAGATGAAAAAACCTTTCGAGTATGCATTCGAGCATCCAATGATGATTTCAAGTACATGTCATCAAATGGCTTGAATGCGGTGAGGATCCCAGTTGGATGGTGGATTGCATATAAAGATCAAACATGGACATCGCCTTTTGTTAGGGGAGCTGGAGACTCTTTAAAAGCCTTGGACAATGCTTTAACTTGGGCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cellulase

Protein Analysis

207

Amino Acids

23.04

Weight (kDa)

9.6

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018568)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0115231
rosa_samantha Rh2AG241900 Rh2AG253100 Rh2BG263000 Rh2BG263300 Rh2CG257900 Rh2CG258000 Rh2DG249800 Rh2DG261300
rosa_wichuraiana Rw2G019780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 503
AclI AACGTT 1 cut(s) 91
AclWI GGATC 2 cut(s) 505, 518
AcuI CTGAAG 2 cut(s) 195, 279
AfaI GTAC 1 cut(s) 479
AflIII ACRYGT 1 cut(s) 480
AgsI TTSAA 5 cut(s) 112, 238, 291, 475, 499
AjnI CCWGG 1 cut(s) 15
AjuI GAANNNNNNNTTGG 2 cut(s) 455, 487
AluBI AGCT 3 cut(s) 215, 264, 575
AluI AGCT 3 cut(s) 215, 264, 575
Alw26I GTCTC 4 cut(s) 125, 137, 398, 573
AlwI GGATC 2 cut(s) 505, 518
AoxI GGCC 3 cut(s) 13, 139, 203
ApeKI GCWGC 1 cut(s) 342
Asp700I GAANNNNTTC 1 cut(s) 92
AspA2I CCTAGG 1 cut(s) 142
AspS9I GGNCC 2 cut(s) 203, 272
AsuHPI GGTGA 3 cut(s) 67, 392, 517
AsuII TTCGAA 1 cut(s) 104
AvaII GGWCC 1 cut(s) 272
AvrII CCTAGG 1 cut(s) 142
BamHI GGATCC 1 cut(s) 510
BbvI GCAGC 1 cut(s) 354
BccI CCATC 1 cut(s) 516
BciT130I CCWGG 1 cut(s) 17
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 4 cut(s) 125, 137, 398, 573
BfaI CTAG 1 cut(s) 143
BisI GCNGC 1 cut(s) 343
BlnI CCTAGG 1 cut(s) 142
BlsI GCNGC 1 cut(s) 344
Bme1390I CCNGG 1 cut(s) 17
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 2 cut(s) 203, 272
BmiI GGNNCC 3 cut(s) 22, 420, 512
BmrFI CCNGG 1 cut(s) 17
BmrI ACTGGG 1 cut(s) 509
BmsI GCATC 1 cut(s) 467
BmuI ACTGGG 1 cut(s) 509
BplI GAGNNNNNCTC 2 cut(s) 117, 149
BpmI CTGGAG 1 cut(s) 597
Bpu14I TTCGAA 1 cut(s) 104
Bsa29I ATCGAT 1 cut(s) 309
BsaJI CCNNGG 5 cut(s) 16, 24, 142, 228, 594
Bse1I ACTGG 1 cut(s) 515
BseBI CCWGG 1 cut(s) 17
BseCI ATCGAT 1 cut(s) 309
BseDI CCNNGG 5 cut(s) 16, 24, 142, 228, 594
BseGI GGATG 2 cut(s) 458, 527
BseNI ACTGG 1 cut(s) 515
BseXI GCAGC 1 cut(s) 354
BshFI GGCC 3 cut(s) 15, 141, 205
BshVI ATCGAT 1 cut(s) 309
BsmAI GTCTC 4 cut(s) 125, 137, 398, 573
BsmBI CGTCTC 1 cut(s) 125
BsmI GAATGC 2 cut(s) 450, 505
BsnI GGCC 3 cut(s) 15, 141, 205
Bsp119I TTCGAA 1 cut(s) 104
Bsp143I GATC 6 cut(s) 3, 57, 306, 310, 510, 541
BspACI CCGC 1 cut(s) 503
BspANI GGCC 3 cut(s) 15, 141, 205
BspDI ATCGAT 1 cut(s) 309
BspLI GGNNCC 3 cut(s) 22, 420, 512
BspPI GGATC 2 cut(s) 505, 518
BspQI GCTCTTC 1 cut(s) 254
BspT104I TTCGAA 1 cut(s) 104
BsrI ACTGG 1 cut(s) 515
BssECI CCNNGG 5 cut(s) 16, 24, 142, 228, 594
BssMI GATC 6 cut(s) 3, 57, 306, 310, 510, 541
BssT1I CCWWGG 4 cut(s) 24, 142, 228, 594
Bst2UI CCWGG 1 cut(s) 17
Bst4CI ACNGT 1 cut(s) 243
Bst6I CTCTTC 1 cut(s) 254
BstBI TTCGAA 1 cut(s) 104
BstDEI CTNAG 1 cut(s) 352
BstF5I GGATG 2 cut(s) 458, 527
BstKTI GATC 6 cut(s) 6, 60, 309, 313, 513, 544
BstMAI GTCTC 4 cut(s) 125, 137, 398, 573
BstMBI GATC 6 cut(s) 3, 57, 306, 310, 510, 541
BstNI CCWGG 1 cut(s) 17
BstNSI RCATGY 1 cut(s) 484
BstSCI CCNGG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 354
BstX2I RGATCY 1 cut(s) 510
BstXI CCANNNNNNTGG 1 cut(s) 522
BstYI RGATCY 1 cut(s) 510
Bsu15I ATCGAT 1 cut(s) 309
BsuRI GGCC 3 cut(s) 15, 141, 205
BsuTUI ATCGAT 1 cut(s) 309
BtgZI GCGATG 1 cut(s) 540
BtsCI GGATG 2 cut(s) 458, 527
Cfr13I GGNCC 2 cut(s) 203, 272
ClaI ATCGAT 1 cut(s) 309
Csp6I GTAC 1 cut(s) 478
CviAII CATG 5 cut(s) 11, 181, 367, 481, 549
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 1 cut(s) 352
DpnI GATC 6 cut(s) 5, 59, 308, 312, 512, 543
DpnII GATC 6 cut(s) 3, 57, 306, 310, 510, 541
DraI TTTAAA 1 cut(s) 588
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
Eco130I CCWWGG 4 cut(s) 24, 142, 228, 594
Eco147I AGGCCT 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 2 cut(s) 195, 279
EcoRII CCWGG 1 cut(s) 15
EcoT14I CCWWGG 4 cut(s) 24, 142, 228, 594
EcoT22I ATGCAT 1 cut(s) 452
ErhI CCWWGG 4 cut(s) 24, 142, 228, 594
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 5 cut(s) 14, 184, 370, 484, 552
FatI CATG 5 cut(s) 10, 180, 366, 480, 548
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 343
FokI GGATG 2 cut(s) 445, 534
Fsp4HI GCNGC 1 cut(s) 343
FspBI CTAG 1 cut(s) 143
GluI GCNGC 1 cut(s) 343
GsuI CTGGAG 1 cut(s) 597
HaeIII GGCC 3 cut(s) 15, 141, 205
Hin1II CATG 5 cut(s) 14, 184, 370, 484, 552
HinfI GANTC 1 cut(s) 581
HphI GGTGA 3 cut(s) 67, 392, 517
Hpy166II GTNNAC 1 cut(s) 164
Hpy188I TCNGA 3 cut(s) 125, 298, 399
Hpy188III TCNNGA 2 cut(s) 134, 388
Hpy8I GTNNAC 1 cut(s) 164
HpyAV CCTTC 3 cut(s) 41, 131, 219
HpyCH4III ACNGT 1 cut(s) 243
HpyCH4IV ACGT 2 cut(s) 91, 118
HpyCH4V TGCA 3 cut(s) 370, 450, 533
HpyF3I CTNAG 1 cut(s) 352
HpySE526I ACGT 2 cut(s) 91, 118
Hsp92II CATG 5 cut(s) 14, 184, 370, 484, 552
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 6 cut(s) 3, 57, 306, 310, 510, 541
LguI GCTCTTC 1 cut(s) 254
LmnI GCTCC 2 cut(s) 20, 572
LpnPI CCDG 6 cut(s) 2, 29, 82, 186, 528, 561
Lsp1109I GCAGC 1 cut(s) 354
LweI GCATC 1 cut(s) 467
MaeI CTAG 1 cut(s) 143
MaeII ACGT 2 cut(s) 91, 118
MaeIII GTNAC 2 cut(s) 183, 380
MalI GATC 6 cut(s) 5, 59, 308, 312, 512, 543
MboI GATC 6 cut(s) 3, 57, 306, 310, 510, 541
MboII GAAGA 4 cut(s) 56, 265, 268, 271
MflI RGATCY 1 cut(s) 510
MluCI AATT 2 cut(s) 193, 411
MlyI GAGTC 1 cut(s) 575
MmeI TCCRAC 1 cut(s) 499
MnlI CCTC 5 cut(s) 46, 213, 263, 409, 501
Mph1103I ATGCAT 1 cut(s) 452
MroXI GAANNNNTTC 1 cut(s) 92
MseI TTAA 2 cut(s) 587, 608
MspR9I CCNGG 1 cut(s) 17
Mva1269I GAATGC 2 cut(s) 450, 505
MvaI CCWGG 1 cut(s) 17
NdeII GATC 6 cut(s) 3, 57, 306, 310, 510, 541
NlaIII CATG 5 cut(s) 14, 184, 370, 484, 552
NlaIV GGNNCC 3 cut(s) 22, 420, 512
NmuCI GTSAC 2 cut(s) 183, 380
NsiI ATGCAT 1 cut(s) 452
NspI RCATGY 1 cut(s) 484
NspV TTCGAA 1 cut(s) 104
PceI AGGCCT 1 cut(s) 141
PciI ACATGT 1 cut(s) 480
PciSI GCTCTTC 1 cut(s) 254
PctI GAATGC 2 cut(s) 450, 505
PdmI GAANNNNTTC 1 cut(s) 92
PkrI GCNGC 1 cut(s) 344
PleI GAGTC 1 cut(s) 575
PpsI GAGTC 1 cut(s) 575
PscI ACATGT 1 cut(s) 480
Psp1406I AACGTT 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
PspN4I GGNNCC 3 cut(s) 22, 420, 512
PspPI GGNCC 2 cut(s) 203, 272
PsuI RGATCY 1 cut(s) 510
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
SapI GCTCTTC 1 cut(s) 254
SaqAI TTAA 2 cut(s) 587, 608
SatI GCNGC 1 cut(s) 343
Sau3AI GATC 6 cut(s) 3, 57, 306, 310, 510, 541
Sau96I GGNCC 2 cut(s) 203, 272
SchI GAGTC 1 cut(s) 575
ScrFI CCNGG 1 cut(s) 17
SfaNI GCATC 1 cut(s) 467
SfuI TTCGAA 1 cut(s) 104
SinI GGWCC 1 cut(s) 272
Sse9I AATT 2 cut(s) 193, 411
SseBI AGGCCT 1 cut(s) 141
SsiI CCGC 1 cut(s) 503
SspMI CTAG 1 cut(s) 143
StuI AGGCCT 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 15
StyI CCWWGG 4 cut(s) 24, 142, 228, 594
TaaI ACNGT 1 cut(s) 243
TaiI ACGT 2 cut(s) 94, 121
TaqI TCGA 8 cut(s) 42, 104, 135, 251, 309, 387, 442, 454
TasI AATT 2 cut(s) 193, 411
TatI WGTACW 1 cut(s) 477
Tru1I TTAA 2 cut(s) 587, 608
Tru9I TTAA 2 cut(s) 587, 608
TseFI GTSAC 2 cut(s) 183, 380
TseI GCWGC 1 cut(s) 342
Tsp45I GTSAC 2 cut(s) 183, 380
TspDTI ATGAA 1 cut(s) 444
VpaK11BI GGWCC 1 cut(s) 272
XceI RCATGY 1 cut(s) 484
XcmI CCANNNNNNNNNTGG 1 cut(s) 522
XmaJI CCTAGG 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 92
XspI CTAG 1 cut(s) 143
Zsp2I ATGCAT 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.