Rh2DG261300

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0018568
Physical Location & Seq
Forward (+)
28069220 .. 28083433
14214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG261300.1

Sequence Viewer

Length: 618 bp
ATGCTGAGGAGCTGTGGAGGACCAATCAATCATCTTTCAACTTCAGAACCTATGATCGATCAACATTTTGTGGGAAAGTCAAAGGTTAGCAGCAAGGTCTTAGTAAAGAGAACCATGCAAGAACTTGGTGACATCGAGATATTTCAGATTGAGACTGAAATTGAGGAACCACAAGATGAAAAAACCTTTCGAGTATGCATTCGAGCATCCAATGGTTCCCAAAATGGAAATGATCACAATGGAACAAGAGATGGCTCTCAGGAATGGGGAGATAAATACATAGACAAAACTGTGGAAGTTATAGAATTCTTAGCAGCAAGATTTGCTGGTAACCCAGCTTTTGCAGCAATTGAGTTGCTGAATGAGCCTCTAGCACCATGTGTGACTATATACAACCTCAAAAAGTATTACAAAGTAGGATATGATGTAGTAAGGAAGTACACTTCAAGTGCCTATGTGATCCTATCAAACCGCTTGGGACGTGCTGATCCAAAGGAGCTCATCTCATTTGCCCAAGGCATTACTACAGCTTATATTCAGACAAGTTCAACGGCTTCAGTGTGCAACAAAATATTAATTTCATCTACAACCAACGAGGTTCTGATCTCACTGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cellulase

Protein Analysis

205

Amino Acids

22.73

Weight (kDa)

5.96

Isoelectric Point (pI)

39.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018568)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0115231
rosa_samantha Rh2AG241900 Rh2AG253100 Rh2BG263000 Rh2BG263300 Rh2CG257900 Rh2CG258000 Rh2DG249800 Rh2DG261300
rosa_wichuraiana Rw2G019780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 472
AclWI GGATC 2 cut(s) 454, 482
AcsI RAATTY 1 cut(s) 305
AcuI CTGAAG 2 cut(s) 27, 540
AdeI CACNNNGTG 1 cut(s) 380
AfaI GTAC 1 cut(s) 440
AgsI TTSAA 3 cut(s) 39, 447, 549
AjiI CACGTC 1 cut(s) 482
AleI CACNNNNGTG 1 cut(s) 613
AluBI AGCT 4 cut(s) 12, 338, 499, 530
AluI AGCT 4 cut(s) 12, 338, 499, 530
Alw21I GWGCWC 1 cut(s) 501
Alw26I GTCTC 1 cut(s) 146
AlwI GGATC 2 cut(s) 454, 482
ApeKI GCWGC 3 cut(s) 90, 314, 344
ApoI RAATTY 1 cut(s) 305
AseI ATTAAT 1 cut(s) 575
AspS9I GGNCC 1 cut(s) 20
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 1 cut(s) 20
BanII GRGCYC 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 501
BbvCI CCTCAGC 1 cut(s) 5
BbvI GCAGC 3 cut(s) 102, 326, 356
BccI CCATC 1 cut(s) 245
BceAI ACGGC 1 cut(s) 567
BclI TGATCA 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 1 cut(s) 371
BfmI CTRYAG 1 cut(s) 525
BisI GCNGC 3 cut(s) 91, 315, 345
BlsI GCNGC 3 cut(s) 92, 316, 346
Bme18I GGWCC 1 cut(s) 20
BmgBI CACGTC 1 cut(s) 482
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 2 cut(s) 168, 217
BmsI GCATC 1 cut(s) 215
BplI GAGNNNNNCTC 2 cut(s) 488, 520
Bpu10I CCTNAGC 1 cut(s) 5
Bsa29I ATCGAT 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 514
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 514
BseGI GGATG 1 cut(s) 206
BseMII CTCAG 1 cut(s) 272
BseRI GAGGAG 1 cut(s) 22
BseXI GCAGC 3 cut(s) 102, 326, 356
BseYI CCCAGC 1 cut(s) 334
BshVI ATCGAT 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 501
BslFI GGGAC 1 cut(s) 492
BsmAI GTCTC 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 492
BsmI GAATGC 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 501
Bsp143I GATC 6 cut(s) 54, 58, 232, 459, 487, 603
BspACI CCGC 1 cut(s) 472
BspCNI CTCAG 1 cut(s) 271
BspDI ATCGAT 1 cut(s) 57
BspLI GGNNCC 2 cut(s) 168, 217
BspPI GGATC 2 cut(s) 454, 482
BssECI CCNNGG 1 cut(s) 514
BssMI GATC 6 cut(s) 54, 58, 232, 459, 487, 603
BssT1I CCWWGG 1 cut(s) 514
Bst4CI ACNGT 1 cut(s) 292
BstAPI GCANNNNNTGC 1 cut(s) 323
BstDEI CTNAG 4 cut(s) 5, 100, 258, 310
BstEII GGTNACC 1 cut(s) 329
BstF5I GGATG 1 cut(s) 206
BstKTI GATC 6 cut(s) 57, 61, 235, 462, 490, 606
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 6 cut(s) 54, 58, 232, 459, 487, 603
BstMWI GCNNNNNNNGC 3 cut(s) 323, 344, 364
BstPI GGTNACC 1 cut(s) 329
BstSFI CTRYAG 1 cut(s) 525
BstV1I GCAGC 3 cut(s) 102, 326, 356
Bsu15I ATCGAT 1 cut(s) 57
BsuTUI ATCGAT 1 cut(s) 57
BtrI CACGTC 1 cut(s) 482
BtsCI GGATG 1 cut(s) 206
BtsI GCAGTG 1 cut(s) 608
BtsIMutI CAGTG 2 cut(s) 564, 608
Cfr13I GGNCC 1 cut(s) 20
ClaI ATCGAT 1 cut(s) 57
Csp6I GTAC 1 cut(s) 439
CviAII CATG 2 cut(s) 115, 378
CviJI RGCY 7 cut(s) 12, 255, 338, 367, 499, 530, 554
CviKI_1 RGCY 7 cut(s) 12, 255, 338, 367, 499, 530, 554
CviQI GTAC 1 cut(s) 439
DdeI CTNAG 4 cut(s) 5, 100, 258, 310
DpnI GATC 6 cut(s) 56, 60, 234, 461, 489, 605
DpnII GATC 6 cut(s) 54, 58, 232, 459, 487, 603
DraIII CACNNNGTG 1 cut(s) 380
Ecl136II GAGCTC 1 cut(s) 499
Eco130I CCWWGG 1 cut(s) 514
Eco24I GRGCYC 1 cut(s) 501
Eco47I GGWCC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 499
Eco57I CTGAAG 2 cut(s) 27, 540
Eco91I GGTNACC 1 cut(s) 329
EcoICRI GAGCTC 1 cut(s) 499
EcoO65I GGTNACC 1 cut(s) 329
EcoRI GAATTC 1 cut(s) 305
EcoT14I CCWWGG 1 cut(s) 514
EcoT22I ATGCAT 1 cut(s) 200
EcoT38I GRGCYC 1 cut(s) 501
ErhI CCWWGG 1 cut(s) 514
FaeI CATG 2 cut(s) 118, 381
FaqI GGGAC 1 cut(s) 492
FatI CATG 2 cut(s) 114, 377
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 3 cut(s) 91, 315, 345
FokI GGATG 1 cut(s) 193
FriOI GRGCYC 1 cut(s) 501
Fsp4HI GCNGC 3 cut(s) 91, 315, 345
FspBI CTAG 1 cut(s) 371
GluI GCNGC 3 cut(s) 91, 315, 345
GsaI CCCAGC 1 cut(s) 338
Hin1II CATG 2 cut(s) 118, 381
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 441
Hpy188I TCNGA 4 cut(s) 46, 147, 540, 603
Hpy188III TCNNGA 2 cut(s) 136, 260
Hpy8I GTNNAC 1 cut(s) 441
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 1 cut(s) 481
HpyCH4V TGCA 4 cut(s) 118, 198, 344, 564
HpyF10VI GCNNNNNNNGC 3 cut(s) 323, 344, 364
HpyF3I CTNAG 4 cut(s) 5, 100, 258, 310
HpySE526I ACGT 1 cut(s) 481
Hsp92II CATG 2 cut(s) 118, 381
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 6 cut(s) 54, 58, 232, 459, 487, 603
LmnI GCTCC 2 cut(s) 9, 496
LpnPI CCDG 3 cut(s) 245, 312, 348
Lsp1109I GCAGC 3 cut(s) 102, 326, 356
LweI GCATC 1 cut(s) 215
MaeI CTAG 1 cut(s) 371
MaeII ACGT 1 cut(s) 481
MaeIII GTNAC 3 cut(s) 128, 329, 382
MalI GATC 6 cut(s) 56, 60, 234, 461, 489, 605
MboI GATC 6 cut(s) 54, 58, 232, 459, 487, 603
MfeI CAATTG 1 cut(s) 348
MhlI GDGCHC 1 cut(s) 501
MluCI AATT 4 cut(s) 159, 305, 348, 576
MnlI CCTC 5 cut(s) 11, 157, 378, 407, 589
Mph1103I ATGCAT 1 cut(s) 200
MseI TTAA 1 cut(s) 575
MslI CAYNNNNRTG 1 cut(s) 613
MunI CAATTG 1 cut(s) 348
Mva1269I GAATGC 1 cut(s) 198
MwoI GCNNNNNNNGC 3 cut(s) 323, 344, 364
NdeII GATC 6 cut(s) 54, 58, 232, 459, 487, 603
NlaIII CATG 2 cut(s) 118, 381
NlaIV GGNNCC 2 cut(s) 168, 217
NmuCI GTSAC 2 cut(s) 128, 382
NsiI ATGCAT 1 cut(s) 200
OliI CACNNNNGTG 1 cut(s) 613
PctI GAATGC 1 cut(s) 198
PkrI GCNGC 3 cut(s) 92, 316, 346
PshBI ATTAAT 1 cut(s) 575
Psp124BI GAGCTC 1 cut(s) 501
PspEI GGTNACC 1 cut(s) 329
PspFI CCCAGC 1 cut(s) 334
PspN4I GGNNCC 2 cut(s) 168, 217
PspPI GGNCC 1 cut(s) 20
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
RseI CAYNNNNRTG 1 cut(s) 613
SacI GAGCTC 1 cut(s) 501
SaqAI TTAA 1 cut(s) 575
SatI GCNGC 3 cut(s) 91, 315, 345
Sau3AI GATC 6 cut(s) 54, 58, 232, 459, 487, 603
Sau96I GGNCC 1 cut(s) 20
SduI GDGCHC 1 cut(s) 501
SfaNI GCATC 1 cut(s) 215
SfcI CTRYAG 1 cut(s) 525
SinI GGWCC 1 cut(s) 20
SmiMI CAYNNNNRTG 1 cut(s) 613
Sse9I AATT 4 cut(s) 159, 305, 348, 576
SsiI CCGC 1 cut(s) 472
SspI AATATT 1 cut(s) 573
SspMI CTAG 1 cut(s) 371
SstI GAGCTC 1 cut(s) 501
StyI CCWWGG 1 cut(s) 514
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 1 cut(s) 484
TaqI TCGA 4 cut(s) 57, 135, 190, 202
TasI AATT 4 cut(s) 159, 305, 348, 576
TatI WGTACW 1 cut(s) 438
Tru1I TTAA 1 cut(s) 575
Tru9I TTAA 1 cut(s) 575
TscAI CASTG 2 cut(s) 564, 615
TseFI GTSAC 2 cut(s) 128, 382
TseI GCWGC 3 cut(s) 90, 314, 344
Tsp45I GTSAC 2 cut(s) 128, 382
TspDTI ATGAA 2 cut(s) 192, 570
TspRI CASTG 2 cut(s) 564, 615
VpaK11BI GGWCC 1 cut(s) 20
VspI ATTAAT 1 cut(s) 575
XapI RAATTY 1 cut(s) 305
XspI CTAG 1 cut(s) 371
Zsp2I ATGCAT 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.