Rh2DG249800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0018568
Physical Location & Seq
Forward (+)
25686994 .. 25687296
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG249800.1

Sequence Viewer

Length: 303 bp
ATGAAGCGTTCAAAGGAAGCTGATCAAGAAAAACTAGTAGTGAAGGGAAAGAAGACTTGCTCAAAGAGCTCAGCTGGTTCTGTTCATGGATCCAAGAACAACTCTGCAGGCCTAGGCAAGATTGGTGTTAGTAAACAACCGATGTTAGTCATGTCACAGAACAATTTGGCGGAGCCATCTTCAGCTATGAGGTGGCCTTGCCCCCACTCCTCCACAACCCCCAACCACCACCACCAAACCCACAACCACCCAAAAAAAAAAAATTTGGGCAGCTCCGCCATTATGCTCATGAGGTTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.87

Weight (kDa)

10.36

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018568)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0115231
rosa_samantha Rh2AG241900 Rh2AG253100 Rh2BG263000 Rh2BG263300 Rh2CG257900 Rh2CG258000 Rh2DG249800 Rh2DG261300
rosa_wichuraiana Rw2G019780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 170, 276
AclWI GGATC 2 cut(s) 84, 97
AcsI RAATTY 1 cut(s) 262
AcuI CTGAAG 1 cut(s) 165
AgsI TTSAA 1 cut(s) 12
AhlI ACTAGT 1 cut(s) 34
AluBI AGCT 5 cut(s) 20, 69, 74, 185, 273
AluI AGCT 5 cut(s) 20, 69, 74, 185, 273
Alw21I GWGCWC 1 cut(s) 71
AlwI GGATC 2 cut(s) 84, 97
AoxI GGCC 2 cut(s) 109, 194
ApeKI GCWGC 1 cut(s) 270
ApoI RAATTY 1 cut(s) 262
AspA2I CCTAGG 1 cut(s) 112
AvrII CCTAGG 1 cut(s) 112
BamHI GGATCC 1 cut(s) 89
BanII GRGCYC 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 71
BbvI GCAGC 1 cut(s) 282
BccI CCATC 1 cut(s) 184
BclI TGATCA 1 cut(s) 22
BcuI ACTAGT 1 cut(s) 34
BfaI CTAG 2 cut(s) 35, 113
BfmI CTRYAG 1 cut(s) 105
BisI GCNGC 1 cut(s) 271
BlnI CCTAGG 1 cut(s) 112
BlpI GCTNAGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 272
BmiI GGNNCC 2 cut(s) 91, 174
BpiI GAAGAC 1 cut(s) 59
Bpu1102I GCTNAGC 1 cut(s) 70
BsaJI CCNNGG 1 cut(s) 112
BseDI CCNNGG 1 cut(s) 112
BseMII CTCAG 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 199
BseXI GCAGC 1 cut(s) 282
BshFI GGCC 2 cut(s) 111, 196
BsiHKAI GWGCWC 1 cut(s) 71
BsnI GGCC 2 cut(s) 111, 196
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 2 cut(s) 22, 89
Bsp1720I GCTNAGC 1 cut(s) 70
BspACI CCGC 2 cut(s) 170, 276
BspANI GGCC 2 cut(s) 111, 196
BspCNI CTCAG 1 cut(s) 83
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 2 cut(s) 91, 174
BspMAI CTGCAG 1 cut(s) 109
BspPI GGATC 2 cut(s) 84, 97
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 2 cut(s) 22, 89
BssT1I CCWWGG 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 1 cut(s) 70
BstKTI GATC 2 cut(s) 25, 92
BstMBI GATC 2 cut(s) 22, 89
BstMWI GCNNNNNNNGC 1 cut(s) 66
BstSFI CTRYAG 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 282
BstV2I GAAGAC 1 cut(s) 59
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
BsuRI GGCC 2 cut(s) 111, 196
Cac8I GCNNGC 1 cut(s) 109
CciI TCATGA 1 cut(s) 288
CviAII CATG 3 cut(s) 86, 151, 289
CviJI RGCY 8 cut(s) 20, 69, 74, 111, 175, 185, 196, 273
CviKI_1 RGCY 8 cut(s) 20, 69, 74, 111, 175, 185, 196, 273
DdeI CTNAG 1 cut(s) 70
DpnI GATC 2 cut(s) 24, 91
DpnII GATC 2 cut(s) 22, 89
EciI GGCGGA 2 cut(s) 185, 265
Ecl136II GAGCTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 112
Eco147I AGGCCT 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 71
Eco53kI GAGCTC 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 165
EcoICRI GAGCTC 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 112
EcoT38I GRGCYC 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 112
FaeI CATG 3 cut(s) 89, 154, 292
FaiI YATR 5 cut(s) 87, 152, 188, 284, 290
FatI CATG 3 cut(s) 85, 150, 288
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 271
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 271
FspBI CTAG 2 cut(s) 35, 113
GluI GCNGC 1 cut(s) 271
HaeIII GGCC 2 cut(s) 111, 196
Hin1II CATG 3 cut(s) 89, 154, 292
Hpy166II GTNNAC 2 cut(s) 134, 297
Hpy188III TCNNGA 2 cut(s) 26, 289
Hpy8I GTNNAC 2 cut(s) 134, 297
HpyAV CCTTC 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 1 cut(s) 66
HpyF3I CTNAG 1 cut(s) 70
Hsp92II CATG 3 cut(s) 89, 154, 292
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 2 cut(s) 22, 89
LmnI GCTCC 2 cut(s) 172, 278
LpnPI CCDG 2 cut(s) 60, 93
Lsp1109I GCAGC 1 cut(s) 282
MaeI CTAG 2 cut(s) 35, 113
MaeIII GTNAC 1 cut(s) 153
MalI GATC 2 cut(s) 24, 91
MboI GATC 2 cut(s) 22, 89
MboII GAAGA 2 cut(s) 64, 171
MflI RGATCY 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 2 cut(s) 163, 262
MnlI CCTC 3 cut(s) 183, 220, 285
MspA1I CMGCKG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 66
NdeII GATC 2 cut(s) 22, 89
NlaIII CATG 3 cut(s) 89, 154, 292
NlaIV GGNNCC 2 cut(s) 91, 174
NmuCI GTSAC 1 cut(s) 153
PagI TCATGA 1 cut(s) 288
PceI AGGCCT 1 cut(s) 111
PkrI GCNGC 1 cut(s) 272
Psp124BI GAGCTC 1 cut(s) 71
PspN4I GGNNCC 2 cut(s) 91, 174
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 1 cut(s) 89
PvuII CAGCTG 1 cut(s) 74
SacI GAGCTC 1 cut(s) 71
SatI GCNGC 1 cut(s) 271
Sau3AI GATC 2 cut(s) 22, 89
SduI GDGCHC 1 cut(s) 71
SetI ASST 7 cut(s) 22, 71, 76, 187, 194, 275, 296
SfcI CTRYAG 1 cut(s) 105
SpeI ACTAGT 1 cut(s) 34
Sse9I AATT 2 cut(s) 163, 262
SseBI AGGCCT 1 cut(s) 111
SsiI CCGC 2 cut(s) 170, 276
SspMI CTAG 2 cut(s) 35, 113
SstI GAGCTC 1 cut(s) 71
StuI AGGCCT 1 cut(s) 111
StyI CCWWGG 1 cut(s) 112
TasI AATT 2 cut(s) 163, 262
TseFI GTSAC 1 cut(s) 153
TseI GCWGC 1 cut(s) 270
Tsp45I GTSAC 1 cut(s) 153
TspDTI ATGAA 2 cut(s) 17, 74
XapI RAATTY 1 cut(s) 262
XmaJI CCTAGG 1 cut(s) 112
XspI CTAG 2 cut(s) 35, 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.