Rh2CG258000

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0018568
Physical Location & Seq
Forward (+)
27519777 .. 27520367
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG258000.1

Sequence Viewer

Length: 360 bp
ATGAAGGTGATTATAGACCTACATGCTGTTGAAGGTTCCCAAAATGGCAATGATCACAATGGAACAAGAGATGGCTCTCAGGAATGGGAAGATAAATACATAGACAAGACTGTGGAAGTTATAGAATTCTTAGCAGCAAGATTTGCTGGTAACCCAGCTTTTGCAGCAATTGAGTTGCTGAATGAGCCTCTAGCACCATGTGTGACTATATACAACCTCAAAAAGTATTACAAAGTAGGATATGATGTAGTAAGGAAGTACACTTCAAGTGCCTATGTGATCCTATCAAACCGCTTGGGAAGTGCTGATCCAAAGGAGCTCATCTCATTTGCCCAAGGCATTACTACAGCTTATATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cellulase

Protein Analysis

119

Amino Acids

13.23

Weight (kDa)

5.3

Isoelectric Point (pI)

21.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cellulase PF00150 1 - 98 7e-08 Cellulase (glycosyl hydrolase family 5)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018568)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0115231
rosa_samantha Rh2AG241900 Rh2AG253100 Rh2BG263000 Rh2BG263300 Rh2CG257900 Rh2CG258000 Rh2DG249800 Rh2DG261300
rosa_wichuraiana Rw2G019780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 292
AclWI GGATC 2 cut(s) 274, 302
AcsI RAATTY 1 cut(s) 125
AdeI CACNNNGTG 1 cut(s) 200
AfaI GTAC 1 cut(s) 260
AgsI TTSAA 2 cut(s) 32, 267
AluBI AGCT 3 cut(s) 158, 319, 350
AluI AGCT 3 cut(s) 158, 319, 350
Alw21I GWGCWC 1 cut(s) 321
AlwI GGATC 2 cut(s) 274, 302
ApeKI GCWGC 2 cut(s) 134, 164
ApoI RAATTY 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 19
BanII GRGCYC 1 cut(s) 321
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 2 cut(s) 146, 176
BccI CCATC 1 cut(s) 65
BclI TGATCA 1 cut(s) 52
BfaI CTAG 1 cut(s) 191
BfmI CTRYAG 1 cut(s) 345
BisI GCNGC 2 cut(s) 135, 165
BlsI GCNGC 2 cut(s) 136, 166
BmiI GGNNCC 1 cut(s) 37
BplI GAGNNNNNCTC 2 cut(s) 308, 340
BsaJI CCNNGG 1 cut(s) 334
Bse3DI GCAATG 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 334
BseMI GCAATG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 92
BseXI GCAGC 2 cut(s) 146, 176
BseYI CCCAGC 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 3 cut(s) 52, 279, 307
BspACI CCGC 1 cut(s) 292
BspCNI CTCAG 1 cut(s) 91
BspLI GGNNCC 1 cut(s) 37
BspPI GGATC 2 cut(s) 274, 302
BsrDI GCAATG 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 334
BssMI GATC 3 cut(s) 52, 279, 307
BssT1I CCWWGG 1 cut(s) 334
Bst4CI ACNGT 1 cut(s) 112
BstAPI GCANNNNNTGC 1 cut(s) 143
BstDEI CTNAG 2 cut(s) 78, 130
BstEII GGTNACC 1 cut(s) 149
BstKTI GATC 3 cut(s) 55, 282, 310
BstMBI GATC 3 cut(s) 52, 279, 307
BstMWI GCNNNNNNNGC 3 cut(s) 143, 164, 184
BstNSI RCATGY 1 cut(s) 26
BstPI GGTNACC 1 cut(s) 149
BstSFI CTRYAG 1 cut(s) 345
BstV1I GCAGC 2 cut(s) 146, 176
Csp6I GTAC 1 cut(s) 259
CviAII CATG 2 cut(s) 23, 198
CviJI RGCY 5 cut(s) 75, 158, 187, 319, 350
CviKI_1 RGCY 5 cut(s) 75, 158, 187, 319, 350
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 2 cut(s) 78, 130
DpnI GATC 3 cut(s) 54, 281, 309
DpnII GATC 3 cut(s) 52, 279, 307
DraIII CACNNNGTG 1 cut(s) 200
Ecl136II GAGCTC 1 cut(s) 319
Eco130I CCWWGG 1 cut(s) 334
Eco24I GRGCYC 1 cut(s) 321
Eco53kI GAGCTC 1 cut(s) 319
Eco91I GGTNACC 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 319
EcoO65I GGTNACC 1 cut(s) 149
EcoRI GAATTC 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 334
EcoT38I GRGCYC 1 cut(s) 321
ErhI CCWWGG 1 cut(s) 334
FaeI CATG 2 cut(s) 26, 201
FatI CATG 2 cut(s) 22, 197
FbaI TGATCA 1 cut(s) 52
Fnu4HI GCNGC 2 cut(s) 135, 165
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 2 cut(s) 135, 165
FspBI CTAG 1 cut(s) 191
GluI GCNGC 2 cut(s) 135, 165
GsaI CCCAGC 1 cut(s) 158
Hin1II CATG 2 cut(s) 26, 201
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 261
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 1 cut(s) 261
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 164, 184
HpyF3I CTNAG 2 cut(s) 78, 130
Hsp92II CATG 2 cut(s) 26, 201
Ksp22I TGATCA 1 cut(s) 52
Kzo9I GATC 3 cut(s) 52, 279, 307
LmnI GCTCC 1 cut(s) 316
LpnPI CCDG 3 cut(s) 65, 132, 168
Lsp1109I GCAGC 2 cut(s) 146, 176
MaeI CTAG 1 cut(s) 191
MaeIII GTNAC 2 cut(s) 149, 202
MalI GATC 3 cut(s) 54, 281, 309
MboI GATC 3 cut(s) 52, 279, 307
MboII GAAGA 1 cut(s) 101
MfeI CAATTG 1 cut(s) 168
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 2 cut(s) 125, 168
MnlI CCTC 2 cut(s) 198, 227
MunI CAATTG 1 cut(s) 168
MwoI GCNNNNNNNGC 3 cut(s) 143, 164, 184
NdeII GATC 3 cut(s) 52, 279, 307
NlaIII CATG 2 cut(s) 26, 201
NlaIV GGNNCC 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 202
NspI RCATGY 1 cut(s) 26
PkrI GCNGC 2 cut(s) 136, 166
Psp124BI GAGCTC 1 cut(s) 321
PspEI GGTNACC 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 37
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SacI GAGCTC 1 cut(s) 321
SatI GCNGC 2 cut(s) 135, 165
Sau3AI GATC 3 cut(s) 52, 279, 307
SduI GDGCHC 1 cut(s) 321
SetI ASST 7 cut(s) 9, 21, 37, 160, 219, 321, 352
SfcI CTRYAG 1 cut(s) 345
Sse9I AATT 2 cut(s) 125, 168
SsiI CCGC 1 cut(s) 292
SspMI CTAG 1 cut(s) 191
SstI GAGCTC 1 cut(s) 321
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 1 cut(s) 112
TasI AATT 2 cut(s) 125, 168
TatI WGTACW 1 cut(s) 258
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 2 cut(s) 134, 164
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 125
XceI RCATGY 1 cut(s) 26
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.