Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0017021

Physical Location & Seq

Genomic Coordinates Reverse (-)

19079030 .. 19079218

Gene Structure 189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG206400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGAGAACGAGAAGCCGCAAAGGAAAATTGCAGAGGCATTCAAGGAGCTGGAGGCAGCCGTGAAATCGGAGACCGGCGAAGTGGAGGTTGCGCCGATCTCGCAGCGTGTTCTCTCGTCTCGCCGCTGTTTCAGGACGGGCACGGAGCTGGAGGTGACGATGGGCATGGCACGGACGCCGGCGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0006810 GO:0006811 GO:0006812 GO:0006869 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0008289 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010175 GO:0010876 GO:0014070 GO:0015075 GO:0015101 GO:0015166 GO:0015318 GO:0015665 GO:0015695 GO:0015696 GO:0015791 GO:0015850 GO:0016043 GO:0022857 GO:0033036 GO:0034220 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0046624 GO:0046677 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051861 GO:0055085 GO:0061024 GO:0071702 GO:0071705 GO:0071840 GO:0072488 GO:0097367 GO:0098542 GO:0098655 GO:0120009 GO:0120013 GO:1901618 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

62

Amino Acids

6.9

Weight (kDa)

6.26

Isoelectric Point (pI)

33.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017021)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002257
rosa_multiflora	Rmu_sc0003413.1_g000038 Rmu_sc0042630.1_g000001
rosa_samantha	Rh1DG161700 Rh2AG291800 Rh2BG206400 Rh4BG265000 Rh4CG087500 Rh4DG297600 Rh5BG507400 Rh5CG290400 Rh5CG531000 Rh6DG200600 Rh7BG411000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	17, 124
AcyI	GRCGYC	1 cut(s)	176
AgsI	TTSAA	1 cut(s)	43
AluBI	AGCT	2 cut(s)	49, 148
AluI	AGCT	2 cut(s)	49, 148
Alw26I	GTCTC	2 cut(s)	65, 123
ApeKI	GCWGC	2 cut(s)	56, 103
AspLEI	GCGC	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	166
BaeGI	GKGCMC	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	68, 115
BccI	CCATC	1 cut(s)	154
BceAI	ACGGC	1 cut(s)	44
BcoDI	GTCTC	2 cut(s)	65, 123
BisI	GCNGC	4 cut(s)	17, 57, 104, 124
BlsI	GCNGC	4 cut(s)	18, 58, 105, 125
BpmI	CTGGAG	2 cut(s)	71, 170
BsaHI	GRCGYC	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	65
Bse118I	RCCGGY	2 cut(s)	74, 178
BseSI	GKGCMC	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	68, 115
BsiSI	CCGG	2 cut(s)	75, 179
BsmAI	GTCTC	2 cut(s)	65, 123
BsmBI	CGTCTC	1 cut(s)	123
BsmI	GAATGC	1 cut(s)	38
Bso31I	GGTCTC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	96
BspACI	CCGC	2 cut(s)	17, 124
BspTNI	GGTCTC	1 cut(s)	65
BsrFI	RCCGGY	2 cut(s)	74, 178
BssAI	RCCGGY	2 cut(s)	74, 178
BssMI	GATC	1 cut(s)	96
BssNI	GRCGYC	1 cut(s)	176
BstACI	GRCGYC	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	1 cut(s)	99
BstMAI	GTCTC	2 cut(s)	65, 123
BstMBI	GATC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstSLI	GKGCMC	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	68, 115
Cac8I	GCNNGC	1 cut(s)	180
CfoI	GCGC	1 cut(s)	94
Cfr10I	RCCGGY	2 cut(s)	74, 178
CseI	GACGC	1 cut(s)	184
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	4 cut(s)	16, 49, 59, 148
CviKI_1	RGCY	4 cut(s)	16, 49, 59, 148
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	65
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	1 cut(s)	169
FaiI	YATR	1 cut(s)	167
FatI	CATG	1 cut(s)	165
Fnu4HI	GCNGC	4 cut(s)	17, 57, 104, 124
Fsp4HI	GCNGC	4 cut(s)	17, 57, 104, 124
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	4 cut(s)	17, 57, 104, 124
GsuI	CTGGAG	2 cut(s)	71, 170
HapII	CCGG	2 cut(s)	75, 179
HgaI	GACGC	1 cut(s)	184
HhaI	GCGC	1 cut(s)	94
Hin1I	GRCGYC	1 cut(s)	176
Hin1II	CATG	1 cut(s)	169
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HpaII	CCGG	2 cut(s)	75, 179
HphI	GGTGA	1 cut(s)	166
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	1 cut(s)	133
HpyCH4V	TGCA	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
Hsp92I	GRCGYC	1 cut(s)	176
Hsp92II	CATG	1 cut(s)	169
HspAI	GCGC	1 cut(s)	92
KroI	GCCGGC	1 cut(s)	178
KroNI	GCCGGC	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	96
LmnI	GCTCC	2 cut(s)	46, 145
LpnPI	CCDG	4 cut(s)	35, 88, 118, 134
Lsp1109I	GCAGC	2 cut(s)	68, 115
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	1 cut(s)	27
MnlI	CCTC	4 cut(s)	28, 46, 79, 145
MreI	CGCCGGCG	1 cut(s)	178
MroNI	GCCGGC	1 cut(s)	178
MspA1I	CMGCKG	1 cut(s)	126
MspI	CCGG	2 cut(s)	75, 179
Mva1269I	GAATGC	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	100
NaeI	GCCGGC	1 cut(s)	180
NdeII	GATC	1 cut(s)	96
NgoMIV	GCCGGC	1 cut(s)	178
NlaIII	CATG	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	154
PctI	GAATGC	1 cut(s)	38
PdiI	GCCGGC	1 cut(s)	180
PkrI	GCNGC	4 cut(s)	18, 58, 105, 125
SatI	GCNGC	4 cut(s)	17, 57, 104, 124
Sau3AI	GATC	1 cut(s)	96
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	4 cut(s)	51, 90, 150, 156
SgrAI	CRCCGGYG	1 cut(s)	178
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	2 cut(s)	17, 124
TasI	AATT	1 cut(s)	27
TauI	GCSGC	2 cut(s)	19, 126
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	2 cut(s)	56, 103
Tsp45I	GTSAC	1 cut(s)	154
TspGWI	ACGGA	2 cut(s)	158, 187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.