Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0017021

Physical Location & Seq

Genomic Coordinates Forward (+)

51942633 .. 51942917

Gene Structure 285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG297600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCGAACGAGAAGCCGCTAAGGAAAATTGCAGAGGCATTCAAGGAGCTGGAGGCAGCCGTGAAATTGGAGACCTGTGAAGTGGAGGTTGCGCAGATCTCGCAGGAGTATTCTCTCGTCTCGCTGCTGTTTCAAGACGGGCACGGAGCTGGAGGCGACGATGGCCATGGCACGGACGCCGGTGACCTGAGGCTAGAGGAATCGAATGTAGTGGTGCGCCACCACGAGCATGGTGACGGTGTCCATCTTCTTCTCCCACAGCGGCAGCTGTCCGGTGCCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0006810 GO:0006811 GO:0006812 GO:0006869 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0008289 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010175 GO:0010876 GO:0014070 GO:0015075 GO:0015101 GO:0015166 GO:0015318 GO:0015665 GO:0015695 GO:0015696 GO:0015791 GO:0015850 GO:0016043 GO:0022857 GO:0033036 GO:0034220 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0046624 GO:0046677 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051861 GO:0055085 GO:0061024 GO:0071702 GO:0071705 GO:0071840 GO:0072488 GO:0097367 GO:0098542 GO:0098655 GO:0120009 GO:0120013 GO:1901618 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

94

Amino Acids

10.22

Weight (kDa)

4.93

Isoelectric Point (pI)

25.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017021)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002257
rosa_multiflora	Rmu_sc0003413.1_g000038 Rmu_sc0042630.1_g000001
rosa_samantha	Rh1DG161700 Rh2AG291800 Rh2BG206400 Rh4BG265000 Rh4CG087500 Rh4DG297600 Rh5BG507400 Rh5CG290400 Rh5CG531000 Rh6DG200600 Rh7BG411000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	93
AccB1I	GGYRCC	1 cut(s)	275
AciI	CCGC	2 cut(s)	17, 262
AcoI	YGGCCR	1 cut(s)	163
AcyI	GRCGYC	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	43, 134
AluBI	AGCT	3 cut(s)	49, 149, 268
AluI	AGCT	3 cut(s)	49, 149, 268
Alw26I	GTCTC	2 cut(s)	65, 124
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	3 cut(s)	56, 124, 265
AspLEI	GCGC	2 cut(s)	94, 219
AsuHPI	GGTGA	2 cut(s)	194, 245
AxyI	CCTNAGG	1 cut(s)	188
BaeGI	GKGCMC	1 cut(s)	144
BalI	TGGCCA	1 cut(s)	165
BanI	GGYRCC	1 cut(s)	275
BauI	CACGAG	1 cut(s)	224
BbvI	GCAGC	3 cut(s)	68, 111, 277
BccI	CCATC	2 cut(s)	155, 252
BceAI	ACGGC	1 cut(s)	44
BcoDI	GTCTC	2 cut(s)	65, 124
BfaI	CTAG	1 cut(s)	194
BglII	AGATCT	1 cut(s)	96
BisI	GCNGC	5 cut(s)	17, 57, 125, 263, 266
BlsI	GCNGC	5 cut(s)	18, 58, 126, 264, 267
BmiI	GGNNCC	1 cut(s)	277
BpmI	CTGGAG	2 cut(s)	71, 171
Bpu10I	CCTNAGC	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse118I	RCCGGY	1 cut(s)	179
Bse21I	CCTNAGG	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	179
BseSI	GKGCMC	1 cut(s)	144
BseXI	GCAGC	3 cut(s)	68, 111, 277
BshFI	GGCC	1 cut(s)	165
BshNI	GGYRCC	1 cut(s)	275
BsiSI	CCGG	2 cut(s)	180, 273
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	65, 124
BsmBI	CGTCTC	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	165
Bso31I	GGTCTC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	96
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	2 cut(s)	17, 262
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	65
BsrFI	RCCGGY	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	96
BssNI	GRCGYC	1 cut(s)	177
BssSI	CACGAG	1 cut(s)	224
BssT1I	CCWWGG	1 cut(s)	166
Bst2BI	CACGAG	1 cut(s)	224
Bst4CI	ACNGT	1 cut(s)	239
BstACI	GRCGYC	1 cut(s)	177
BstDEI	CTNAG	2 cut(s)	20, 188
BstDSI	CCRYGG	1 cut(s)	166
BstEII	GGTNACC	1 cut(s)	182
BstHHI	GCGC	2 cut(s)	94, 219
BstKTI	GATC	1 cut(s)	99
BstMAI	GTCTC	2 cut(s)	65, 124
BstMBI	GATC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 162
BstPI	GGTNACC	1 cut(s)	182
BstSLI	GKGCMC	1 cut(s)	144
BstV1I	GCAGC	3 cut(s)	68, 111, 277
BstX2I	RGATCY	1 cut(s)	96
BstXI	CCANNNNNNTGG	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	96
Bsu36I	CCTNAGG	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	166
CfoI	GCGC	2 cut(s)	94, 219
Cfr10I	RCCGGY	1 cut(s)	179
CseI	GACGC	1 cut(s)	185
CviAII	CATG	2 cut(s)	167, 230
CviJI	RGCY	7 cut(s)	16, 49, 59, 149, 165, 193, 268
CviKI_1	RGCY	7 cut(s)	16, 49, 59, 149, 165, 193, 268
DdeI	CTNAG	2 cut(s)	20, 188
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
EaeI	YGGCCR	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	166
Eco31I	GGTCTC	1 cut(s)	65
Eco81I	CCTNAGG	1 cut(s)	188
Eco91I	GGTNACC	1 cut(s)	182
EcoO65I	GGTNACC	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	2 cut(s)	170, 233
FaiI	YATR	2 cut(s)	168, 231
FatI	CATG	2 cut(s)	166, 229
Fnu4HI	GCNGC	5 cut(s)	17, 57, 125, 263, 266
Fsp4HI	GCNGC	5 cut(s)	17, 57, 125, 263, 266
FspBI	CTAG	1 cut(s)	194
FspI	TGCGCA	1 cut(s)	93
GlaI	GCGC	2 cut(s)	93, 218
GluI	GCNGC	5 cut(s)	17, 57, 125, 263, 266
GsuI	CTGGAG	2 cut(s)	71, 171
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	2 cut(s)	180, 273
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	2 cut(s)	94, 219
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	2 cut(s)	170, 233
Hin6I	GCGC	2 cut(s)	92, 217
HinP1I	GCGC	2 cut(s)	92, 217
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	2 cut(s)	180, 273
HphI	GGTGA	2 cut(s)	194, 245
Hpy188I	TCNGA	1 cut(s)	284
Hpy188III	TCNNGA	1 cut(s)	134
Hpy99I	CGWCG	1 cut(s)	161
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4V	TGCA	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 162
HpyF3I	CTNAG	2 cut(s)	20, 188
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	170, 233
HspAI	GCGC	2 cut(s)	92, 217
Kzo9I	GATC	1 cut(s)	96
LmnI	GCTCC	2 cut(s)	46, 146
LpnPI	CCDG	6 cut(s)	35, 88, 89, 135, 193, 200
Lsp1109I	GCAGC	3 cut(s)	68, 111, 277
MaeI	CTAG	1 cut(s)	194
MaeIII	GTNAC	2 cut(s)	182, 233
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MboII	GAAGA	2 cut(s)	239, 242
MflI	RGATCY	1 cut(s)	96
MhlI	GDGCHC	1 cut(s)	144
MlsI	TGGCCA	1 cut(s)	165
MluCI	AATT	2 cut(s)	27, 65
MluNI	TGGCCA	1 cut(s)	165
MnlI	CCTC	6 cut(s)	28, 46, 79, 146, 183, 190
Mox20I	TGGCCA	1 cut(s)	165
MscI	TGGCCA	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	228
Msp20I	TGGCCA	1 cut(s)	165
MspA1I	CMGCKG	2 cut(s)	262, 268
MspI	CCGG	2 cut(s)	180, 273
Mva1269I	GAATGC	1 cut(s)	38
MwoI	GCNNNNNNNGC	2 cut(s)	100, 162
NcoI	CCATGG	1 cut(s)	166
NdeII	GATC	1 cut(s)	96
NlaIII	CATG	2 cut(s)	170, 233
NlaIV	GGNNCC	1 cut(s)	277
NmuCI	GTSAC	2 cut(s)	182, 233
NsbI	TGCGCA	1 cut(s)	93
PctI	GAATGC	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	200
PflFI	GACNNNGTC	1 cut(s)	239
PkrI	GCNGC	5 cut(s)	18, 58, 126, 264, 267
PspEI	GGTNACC	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	96
PsyI	GACNNNGTC	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	268
RseI	CAYNNNNRTG	1 cut(s)	228
SatI	GCNGC	5 cut(s)	17, 57, 125, 263, 266
Sau3AI	GATC	1 cut(s)	96
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	6 cut(s)	51, 77, 90, 151, 189, 270
SgrAI	CRCCGGYG	1 cut(s)	179
SmiMI	CAYNNNNRTG	1 cut(s)	228
Sse9I	AATT	2 cut(s)	27, 65
SsiI	CCGC	2 cut(s)	17, 262
SspMI	CTAG	1 cut(s)	194
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	239
TaqI	TCGA	1 cut(s)	203
TasI	AATT	2 cut(s)	27, 65
TauI	GCSGC	2 cut(s)	19, 265
TfiI	GAWTC	1 cut(s)	200
TseFI	GTSAC	2 cut(s)	182, 233
TseI	GCWGC	3 cut(s)	56, 124, 265
Tsp45I	GTSAC	2 cut(s)	182, 233
TspGWI	ACGGA	2 cut(s)	159, 188
Tth111I	GACNNNGTC	1 cut(s)	239
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.