Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0017021

Physical Location & Seq

Genomic Coordinates Forward (+)

15756291 .. 15756557

Gene Structure 267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG087500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGCGAAAGAGAAGCCGCTGAGGAAAATTGCAGAGGCATTTAAGGAGCTGGAGCCAGCCGTGAAATCGGAGACCAGCGAAGTGGAGGTTGCGCCGATCTCGCAGGCGTGTTCTCTCGTCTCGCCACTGTTTCAAGACGGGCACAGAGCTAGAGGCGACAATGGGCATGGCACGGACGCCGGCGACCTGAGGTTGAAGGAATCGAACGTAGCGGTGCGCCGCCACGAGCATGGTGACGGTGCCCATCTTTTTCTCGCACGGCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0006810 GO:0006811 GO:0006812 GO:0006869 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0008289 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010175 GO:0010876 GO:0014070 GO:0015075 GO:0015101 GO:0015166 GO:0015318 GO:0015665 GO:0015695 GO:0015696 GO:0015791 GO:0015850 GO:0016043 GO:0022857 GO:0033036 GO:0034220 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0046624 GO:0046677 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051861 GO:0055085 GO:0061024 GO:0071702 GO:0071705 GO:0071840 GO:0072488 GO:0097367 GO:0098542 GO:0098655 GO:0120009 GO:0120013 GO:1901618 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

88

Amino Acids

9.64

Weight (kDa)

6.97

Isoelectric Point (pI)

44.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017021)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002257
rosa_multiflora	Rmu_sc0003413.1_g000038 Rmu_sc0042630.1_g000001
rosa_samantha	Rh1DG161700 Rh2AG291800 Rh2BG206400 Rh4BG265000 Rh4CG087500 Rh4DG297600 Rh5BG507400 Rh5CG290400 Rh5CG531000 Rh6DG200600 Rh7BG411000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	239
AciI	CCGC	4 cut(s)	17, 212, 220, 262
AcyI	GRCGYC	1 cut(s)	177
AgsI	TTSAA	2 cut(s)	134, 196
AluBI	AGCT	2 cut(s)	49, 149
AluI	AGCT	2 cut(s)	49, 149
Alw26I	GTCTC	2 cut(s)	65, 124
AspLEI	GCGC	2 cut(s)	94, 219
AsuHPI	GGTGA	1 cut(s)	245
AxyI	CCTNAGG	1 cut(s)	188
BaeGI	GKGCMC	2 cut(s)	144, 244
BanI	GGYRCC	1 cut(s)	239
BauI	CACGAG	1 cut(s)	224
BbvCI	CCTCAGC	1 cut(s)	20
BccI	CCATC	1 cut(s)	252
BceAI	ACGGC	1 cut(s)	44
BcoDI	GTCTC	2 cut(s)	65, 124
BfaI	CTAG	1 cut(s)	150
BisI	GCNGC	2 cut(s)	17, 220
BlsI	GCNGC	2 cut(s)	18, 221
BmiI	GGNNCC	2 cut(s)	54, 241
BpmI	CTGGAG	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	65
Bse118I	RCCGGY	1 cut(s)	179
Bse21I	CCTNAGG	1 cut(s)	188
BseMII	CTCAG	2 cut(s)	11, 179
BseSI	GKGCMC	2 cut(s)	144, 244
BshNI	GGYRCC	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	180
BsmAI	GTCTC	2 cut(s)	65, 124
BsmBI	CGTCTC	1 cut(s)	124
Bso31I	GGTCTC	1 cut(s)	65
Bsp1286I	GDGCHC	2 cut(s)	144, 244
Bsp143I	GATC	1 cut(s)	96
BspACI	CCGC	4 cut(s)	17, 212, 220, 262
BspCNI	CTCAG	2 cut(s)	12, 180
BspLI	GGNNCC	2 cut(s)	54, 241
BspT107I	GGYRCC	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	65
BsrFI	RCCGGY	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	179
BssMI	GATC	1 cut(s)	96
BssNI	GRCGYC	1 cut(s)	177
BssSI	CACGAG	1 cut(s)	224
Bst2BI	CACGAG	1 cut(s)	224
Bst4CI	ACNGT	2 cut(s)	129, 239
BstACI	GRCGYC	1 cut(s)	177
BstC8I	GCNNGC	3 cut(s)	57, 105, 181
BstDEI	CTNAG	2 cut(s)	20, 188
BstHHI	GCGC	2 cut(s)	94, 219
BstKTI	GATC	1 cut(s)	99
BstMAI	GTCTC	2 cut(s)	65, 124
BstMBI	GATC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstSLI	GKGCMC	2 cut(s)	144, 244
BstXI	CCANNNNNNTGG	2 cut(s)	82, 230
Bsu36I	CCTNAGG	1 cut(s)	188
BtsIMutI	CAGTG	1 cut(s)	125
Cac8I	GCNNGC	3 cut(s)	57, 105, 181
CfoI	GCGC	2 cut(s)	94, 219
Cfr10I	RCCGGY	1 cut(s)	179
CseI	GACGC	1 cut(s)	185
CviAII	CATG	2 cut(s)	167, 230
CviJI	RGCY	5 cut(s)	16, 49, 55, 59, 149
CviKI_1	RGCY	5 cut(s)	16, 49, 55, 59, 149
DdeI	CTNAG	2 cut(s)	20, 188
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	65
Eco81I	CCTNAGG	1 cut(s)	188
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	2 cut(s)	170, 233
FaiI	YATR	2 cut(s)	168, 231
FatI	CATG	2 cut(s)	166, 229
Fnu4HI	GCNGC	2 cut(s)	17, 220
Fsp4HI	GCNGC	2 cut(s)	17, 220
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	2 cut(s)	93, 218
GluI	GCNGC	2 cut(s)	17, 220
GsuI	CTGGAG	1 cut(s)	71
HapII	CCGG	1 cut(s)	180
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	2 cut(s)	94, 219
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	2 cut(s)	170, 233
Hin6I	GCGC	2 cut(s)	92, 217
HinP1I	GCGC	2 cut(s)	92, 217
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	1 cut(s)	245
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	2 cut(s)	129, 239
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	2 cut(s)	20, 188
HpySE526I	ACGT	1 cut(s)	207
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	170, 233
HspAI	GCGC	2 cut(s)	92, 217
KroI	GCCGGC	1 cut(s)	179
KroNI	GCCGGC	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	96
LmnI	GCTCC	2 cut(s)	46, 52
LpnPI	CCDG	6 cut(s)	35, 69, 88, 89, 193, 200
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MhlI	GDGCHC	2 cut(s)	144, 244
MluCI	AATT	1 cut(s)	27
MnlI	CCTC	5 cut(s)	15, 28, 79, 146, 183
MreI	CGCCGGCG	1 cut(s)	179
MroNI	GCCGGC	1 cut(s)	179
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	100
NaeI	GCCGGC	1 cut(s)	181
NdeII	GATC	1 cut(s)	96
NgoMIV	GCCGGC	1 cut(s)	179
NlaIII	CATG	2 cut(s)	170, 233
NlaIV	GGNNCC	2 cut(s)	54, 241
NmuCI	GTSAC	1 cut(s)	233
PdiI	GCCGGC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	18, 221
PspN4I	GGNNCC	2 cut(s)	54, 241
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	2 cut(s)	17, 220
Sau3AI	GATC	1 cut(s)	96
SduI	GDGCHC	2 cut(s)	144, 244
SetI	ASST	6 cut(s)	51, 90, 151, 189, 194, 210
SgrAI	CRCCGGYG	1 cut(s)	179
SmiMI	CAYNNNNRTG	1 cut(s)	228
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	4 cut(s)	17, 212, 220, 262
SspMI	CTAG	1 cut(s)	150
TaaI	ACNGT	2 cut(s)	129, 239
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	203
TasI	AATT	1 cut(s)	27
TauI	GCSGC	2 cut(s)	19, 222
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	233
TspGWI	ACGGA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	132
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.