Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0017021

Physical Location & Seq

Genomic Coordinates Reverse (-)

80524487 .. 80524762

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG507400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGCGAACGAGAAGCCGCTGAGAAAAATTGTAGAGGCATTCAAGGAGCTGGAGGCAGCAGTAAAATTGGAGATCGGCGAAGTGGAGGTTGCCCCGATCTCGCAGGCGTGTTCTCTCGTCTCGCCGCTGTTTCGAGATGGGCACGGAGCTGGAGGCGACGATGGGCATGGCACGAACGCTGGTGACCTGAGGCTGGAGGAATCGAACTTAACGGTGCCCCGCCACGAGCATGGTGACGGTGTCCATCTTCTTCTCCCACGGCGGCAGCTTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0006810 GO:0006811 GO:0006812 GO:0006869 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0008289 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010175 GO:0010876 GO:0014070 GO:0015075 GO:0015101 GO:0015166 GO:0015318 GO:0015665 GO:0015695 GO:0015696 GO:0015791 GO:0015850 GO:0016043 GO:0022857 GO:0033036 GO:0034220 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0046624 GO:0046677 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051861 GO:0055085 GO:0061024 GO:0071702 GO:0071705 GO:0071840 GO:0072488 GO:0097367 GO:0098542 GO:0098655 GO:0120009 GO:0120013 GO:1901618 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

91

Amino Acids

9.83

Weight (kDa)

5.44

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017021)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002257
rosa_multiflora	Rmu_sc0003413.1_g000038 Rmu_sc0042630.1_g000001
rosa_samantha	Rh1DG161700 Rh2AG291800 Rh2BG206400 Rh4BG265000 Rh4CG087500 Rh4DG297600 Rh5BG507400 Rh5CG290400 Rh5CG531000 Rh6DG200600 Rh7BG411000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AciI	CCGC	4 cut(s)	17, 125, 220, 262
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	1 cut(s)	43
AluBI	AGCT	3 cut(s)	49, 149, 268
AluI	AGCT	3 cut(s)	49, 149, 268
Alw26I	GTCTC	1 cut(s)	124
AlwNI	CAGNNNCTG	1 cut(s)	271
ApeKI	GCWGC	2 cut(s)	56, 265
AsuHPI	GGTGA	2 cut(s)	194, 245
AxyI	CCTNAGG	1 cut(s)	188
BaeGI	GKGCMC	2 cut(s)	144, 219
BanI	GGYRCC	1 cut(s)	214
BauI	CACGAG	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	3 cut(s)	131, 155, 252
BcoDI	GTCTC	1 cut(s)	124
BfmI	CTRYAG	1 cut(s)	272
BisI	GCNGC	5 cut(s)	17, 57, 125, 263, 266
BlsI	GCNGC	5 cut(s)	18, 58, 126, 264, 267
BmiI	GGNNCC	1 cut(s)	216
BpmI	CTGGAG	3 cut(s)	71, 171, 215
BsaJI	CCNNGG	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse21I	CCTNAGG	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	257
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMII	CTCAG	2 cut(s)	11, 179
BseSI	GKGCMC	2 cut(s)	144, 219
BseXI	GCAGC	1 cut(s)	68
BshNI	GGYRCC	1 cut(s)	214
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	124
BsmBI	CGTCTC	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	38
Bsp1286I	GDGCHC	2 cut(s)	144, 219
Bsp143I	GATC	2 cut(s)	72, 96
BspACI	CCGC	4 cut(s)	17, 125, 220, 262
BspCNI	CTCAG	2 cut(s)	12, 180
BspLI	GGNNCC	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	2 cut(s)	72, 96
BssSI	CACGAG	1 cut(s)	224
Bst2BI	CACGAG	1 cut(s)	224
Bst4CI	ACNGT	2 cut(s)	214, 239
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	2 cut(s)	20, 188
BstDSI	CCRYGG	1 cut(s)	257
BstEII	GGTNACC	1 cut(s)	182
BstKTI	GATC	2 cut(s)	75, 99
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	2 cut(s)	72, 96
BstPI	GGTNACC	1 cut(s)	182
BstSFI	CTRYAG	1 cut(s)	272
BstSLI	GKGCMC	2 cut(s)	144, 219
BstV1I	GCAGC	1 cut(s)	68
BstXI	CCANNNNNNTGG	1 cut(s)	230
Bsu36I	CCTNAGG	1 cut(s)	188
BtgI	CCRYGG	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	105
CaiI	CAGNNNCTG	1 cut(s)	271
CviAII	CATG	2 cut(s)	167, 230
CviJI	RGCY	5 cut(s)	16, 49, 149, 193, 268
CviKI_1	RGCY	5 cut(s)	16, 49, 149, 193, 268
DdeI	CTNAG	2 cut(s)	20, 188
DpnI	GATC	2 cut(s)	74, 98
DpnII	GATC	2 cut(s)	72, 96
Eco81I	CCTNAGG	1 cut(s)	188
Eco91I	GGTNACC	1 cut(s)	182
EcoO65I	GGTNACC	1 cut(s)	182
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	2 cut(s)	170, 233
FaiI	YATR	2 cut(s)	168, 231
FatI	CATG	2 cut(s)	166, 229
FauI	CCCGC	1 cut(s)	227
Fnu4HI	GCNGC	5 cut(s)	17, 57, 125, 263, 266
Fsp4HI	GCNGC	5 cut(s)	17, 57, 125, 263, 266
GluI	GCNGC	5 cut(s)	17, 57, 125, 263, 266
GsuI	CTGGAG	3 cut(s)	71, 171, 215
Hin1II	CATG	2 cut(s)	170, 233
HinfI	GANTC	1 cut(s)	200
HphI	GGTGA	2 cut(s)	194, 245
Hpy188III	TCNNGA	1 cut(s)	134
Hpy99I	CGWCG	1 cut(s)	161
HpyCH4III	ACNGT	2 cut(s)	214, 239
HpyF3I	CTNAG	2 cut(s)	20, 188
Hsp92II	CATG	2 cut(s)	170, 233
Kzo9I	GATC	2 cut(s)	72, 96
LmnI	GCTCC	2 cut(s)	46, 146
LpnPI	CCDG	6 cut(s)	35, 89, 135, 165, 179, 200
Lsp1109I	GCAGC	1 cut(s)	68
MaeIII	GTNAC	2 cut(s)	182, 233
MalI	GATC	2 cut(s)	74, 98
MboI	GATC	2 cut(s)	72, 96
MboII	GAAGA	2 cut(s)	239, 242
MhlI	GDGCHC	2 cut(s)	144, 219
MluCI	AATT	2 cut(s)	27, 65
MnlI	CCTC	6 cut(s)	28, 46, 79, 146, 183, 190
MseI	TTAA	1 cut(s)	209
MslI	CAYNNNNRTG	1 cut(s)	228
MspA1I	CMGCKG	2 cut(s)	19, 127
Mva1269I	GAATGC	1 cut(s)	38
NdeII	GATC	2 cut(s)	72, 96
NlaIII	CATG	2 cut(s)	170, 233
NlaIV	GGNNCC	1 cut(s)	216
NmuCI	GTSAC	2 cut(s)	182, 233
PctI	GAATGC	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	200
PflFI	GACNNNGTC	1 cut(s)	239
PkrI	GCNGC	5 cut(s)	18, 58, 126, 264, 267
PspEI	GGTNACC	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	216
PstNI	CAGNNNCTG	1 cut(s)	271
PsyI	GACNNNGTC	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	5 cut(s)	17, 57, 125, 263, 266
Sau3AI	GATC	2 cut(s)	72, 96
SduI	GDGCHC	2 cut(s)	144, 219
SetI	ASST	5 cut(s)	51, 90, 151, 189, 270
SfcI	CTRYAG	1 cut(s)	272
SmiMI	CAYNNNNRTG	1 cut(s)	228
Sse9I	AATT	2 cut(s)	27, 65
SsiI	CCGC	4 cut(s)	17, 125, 220, 262
TaaI	ACNGT	2 cut(s)	214, 239
TaqI	TCGA	2 cut(s)	133, 203
TasI	AATT	2 cut(s)	27, 65
TauI	GCSGC	3 cut(s)	19, 127, 265
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TseFI	GTSAC	2 cut(s)	182, 233
TseI	GCWGC	2 cut(s)	56, 265
Tsp45I	GTSAC	2 cut(s)	182, 233
TspGWI	ACGGA	1 cut(s)	159
Tth111I	GACNNNGTC	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.