Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0017021

Physical Location & Seq

Genomic Coordinates Reverse (-)

43879550 .. 43879843

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG265000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGCGAACGAGAAGCCACTGAGGAAAATTGCAGAGGCATTCAAGGAGCTGGAGGCAGTCGTGAAATCGGAGACCGGCGAAGTAGAGGTTGCGCCGATCTCGCAGGCGTGTTCTCTCGTCTCGCCGCTGTTTCAAGACGGGCACGGAGCTGGAGGTGACGATGGGCATGGCACGGACGGCGGCGACCTGAGGCTGGAGGAATCAAACGTAGCGGTGCGCCGCCACGAGCATGGTGACGGTGTCCATCTTCTTCTCCCACAGCGGCAGCTTCTGCAGCCGTCCAGTGCCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0006810 GO:0006811 GO:0006812 GO:0006869 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0008289 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010175 GO:0010876 GO:0014070 GO:0015075 GO:0015101 GO:0015166 GO:0015318 GO:0015665 GO:0015695 GO:0015696 GO:0015791 GO:0015850 GO:0016043 GO:0022857 GO:0033036 GO:0034220 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0046624 GO:0046677 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051861 GO:0055085 GO:0061024 GO:0071702 GO:0071705 GO:0071840 GO:0072488 GO:0097367 GO:0098542 GO:0098655 GO:0120009 GO:0120013 GO:1901618 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

97

Amino Acids

10.3

Weight (kDa)

5.06

Isoelectric Point (pI)

52.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017021)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002257
rosa_multiflora	Rmu_sc0003413.1_g000038 Rmu_sc0042630.1_g000001
rosa_samantha	Rh1DG161700 Rh2AG291800 Rh2BG206400 Rh4BG265000 Rh4CG087500 Rh4DG297600 Rh5BG507400 Rh5CG290400 Rh5CG531000 Rh6DG200600 Rh7BG411000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	125, 180, 212, 220, 262
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	2 cut(s)	43, 134
AluBI	AGCT	3 cut(s)	49, 149, 268
AluI	AGCT	3 cut(s)	49, 149, 268
Alw26I	GTCTC	2 cut(s)	65, 124
AlwNI	CAGNNNCTG	1 cut(s)	271
ApeKI	GCWGC	2 cut(s)	265, 274
AspLEI	GCGC	2 cut(s)	94, 219
AsuHPI	GGTGA	2 cut(s)	167, 245
AxyI	CCTNAGG	1 cut(s)	188
BaeGI	GKGCMC	1 cut(s)	144
BauI	CACGAG	1 cut(s)	224
BbvI	GCAGC	2 cut(s)	277, 286
BccI	CCATC	2 cut(s)	155, 252
BceAI	ACGGC	3 cut(s)	193, 262, 272
BcoDI	GTCTC	2 cut(s)	65, 124
BfmI	CTRYAG	1 cut(s)	272
BisI	GCNGC	6 cut(s)	125, 181, 220, 263, 266, 275
BlsI	GCNGC	6 cut(s)	126, 182, 221, 264, 267, 276
BpmI	CTGGAG	3 cut(s)	71, 171, 215
BsaI	GGTCTC	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	282
Bse21I	CCTNAGG	1 cut(s)	188
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMII	CTCAG	2 cut(s)	11, 179
BseNI	ACTGG	1 cut(s)	282
BseSI	GKGCMC	1 cut(s)	144
BseXI	GCAGC	2 cut(s)	277, 286
BsiSI	CCGG	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	2 cut(s)	65, 124
BsmBI	CGTCTC	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	38
Bso31I	GGTCTC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	96
BspACI	CCGC	5 cut(s)	125, 180, 212, 220, 262
BspCNI	CTCAG	2 cut(s)	12, 180
BspMAI	CTGCAG	1 cut(s)	276
BspTNI	GGTCTC	1 cut(s)	65
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	282
BssAI	RCCGGY	1 cut(s)	74
BssMI	GATC	1 cut(s)	96
BssSI	CACGAG	1 cut(s)	224
Bst2BI	CACGAG	1 cut(s)	224
Bst4CI	ACNGT	1 cut(s)	239
BstAPI	GCANNNNNTGC	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	2 cut(s)	20, 188
BstHHI	GCGC	2 cut(s)	94, 219
BstKTI	GATC	1 cut(s)	99
BstMAI	GTCTC	2 cut(s)	65, 124
BstMBI	GATC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 177, 271, 274
BstSFI	CTRYAG	1 cut(s)	272
BstSLI	GKGCMC	1 cut(s)	144
BstV1I	GCAGC	2 cut(s)	277, 286
BstXI	CCANNNNNNTGG	1 cut(s)	230
Bsu36I	CCTNAGG	1 cut(s)	188
BtsIMutI	CAGTG	2 cut(s)	17, 289
Cac8I	GCNNGC	1 cut(s)	105
CaiI	CAGNNNCTG	1 cut(s)	271
CfoI	GCGC	2 cut(s)	94, 219
Cfr10I	RCCGGY	1 cut(s)	74
CviAII	CATG	2 cut(s)	167, 230
CviJI	RGCY	6 cut(s)	16, 49, 149, 193, 268, 277
CviKI_1	RGCY	6 cut(s)	16, 49, 149, 193, 268, 277
DdeI	CTNAG	2 cut(s)	20, 188
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	65
Eco81I	CCTNAGG	1 cut(s)	188
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	2 cut(s)	170, 233
FaiI	YATR	2 cut(s)	168, 231
FatI	CATG	2 cut(s)	166, 229
Fnu4HI	GCNGC	6 cut(s)	125, 181, 220, 263, 266, 275
Fsp4HI	GCNGC	6 cut(s)	125, 181, 220, 263, 266, 275
GlaI	GCGC	2 cut(s)	93, 218
GluI	GCNGC	6 cut(s)	125, 181, 220, 263, 266, 275
GsuI	CTGGAG	3 cut(s)	71, 171, 215
HapII	CCGG	1 cut(s)	75
HhaI	GCGC	2 cut(s)	94, 219
Hin1II	CATG	2 cut(s)	170, 233
Hin6I	GCGC	2 cut(s)	92, 217
HinP1I	GCGC	2 cut(s)	92, 217
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	2 cut(s)	167, 245
Hpy188I	TCNGA	2 cut(s)	70, 293
Hpy188III	TCNNGA	2 cut(s)	61, 134
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	2 cut(s)	32, 274
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 177, 271, 274
HpyF3I	CTNAG	2 cut(s)	20, 188
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	2 cut(s)	170, 233
HspAI	GCGC	2 cut(s)	92, 217
Kzo9I	GATC	1 cut(s)	96
LmnI	GCTCC	2 cut(s)	46, 146
LpnPI	CCDG	6 cut(s)	35, 88, 89, 135, 179, 200
Lsp1109I	GCAGC	2 cut(s)	277, 286
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	155, 233
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MboII	GAAGA	2 cut(s)	239, 242
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	1 cut(s)	27
MnlI	CCTC	7 cut(s)	15, 28, 46, 79, 146, 183, 190
MslI	CAYNNNNRTG	1 cut(s)	228
MspA1I	CMGCKG	2 cut(s)	127, 262
MspI	CCGG	1 cut(s)	75
Mva1269I	GAATGC	1 cut(s)	38
MwoI	GCNNNNNNNGC	4 cut(s)	100, 177, 271, 274
NdeII	GATC	1 cut(s)	96
NlaIII	CATG	2 cut(s)	170, 233
NmuCI	GTSAC	2 cut(s)	155, 233
PctI	GAATGC	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	200
PflFI	GACNNNGTC	1 cut(s)	239
PkrI	GCNGC	6 cut(s)	126, 182, 221, 264, 267, 276
PstI	CTGCAG	1 cut(s)	276
PstNI	CAGNNNCTG	1 cut(s)	271
PsyI	GACNNNGTC	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	228
SatI	GCNGC	6 cut(s)	125, 181, 220, 263, 266, 275
Sau3AI	GATC	1 cut(s)	96
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	7 cut(s)	51, 90, 151, 157, 189, 210, 270
SfcI	CTRYAG	1 cut(s)	272
SmiMI	CAYNNNNRTG	1 cut(s)	228
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	5 cut(s)	125, 180, 212, 220, 262
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	1 cut(s)	210
TasI	AATT	1 cut(s)	27
TauI	GCSGC	4 cut(s)	127, 183, 222, 265
TfiI	GAWTC	1 cut(s)	200
TscAI	CASTG	2 cut(s)	24, 289
TseFI	GTSAC	2 cut(s)	155, 233
TseI	GCWGC	2 cut(s)	265, 274
Tsp45I	GTSAC	2 cut(s)	155, 233
TspGWI	ACGGA	2 cut(s)	159, 188
TspRI	CASTG	2 cut(s)	24, 289
Tth111I	GACNNNGTC	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.