Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008624

Physical Location & Seq

Genomic Coordinates Forward (+)

5695881 .. 5699819

Gene Structure 3939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG068900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1944 bp

ATGATCATCAAAACAGCCACCGCGGCTTTCCTAGCCATACTCACCTCCTTCACCTTCCTCCTCTTTTCTCCGACCCCAAAATCCTCGTACCACTCCCTCTTCATCTCCGACTCCCTCTCCTCCAACACCTCCATCTCCCGCCACCTCCACACCCTCACGCGCCGCCCCCACGTCGCCGGAACCCCCGCCAACGCCGACGCCGCCGCCTACGTCCTCTCCATCTTCACCTCCTCCAATCTCCTATCCCGCATCACCCCCTACCACGTGGCCCTCACTTACCCCATCTCCCGCTCCCTAACCCTAACCCCTTCACCTTCATCACCACCCATCACTTTCGACCTCCAACAAGAAACCTACCCCGGCGACCCTTACGCTGACGTGGCAGCCGAGGTCCTCCCCACTTTCCACGCTTTTGCCAAGTCCGGGGATGTCACCGGTCACGTGGTTTACGTCAACTACGGGAGGGTAGAGGACTATGAGACACTGAAGAAAATGGGAGTCAACGTTTCTGGTACAATCGTGTTGGCTAGGTATGGAGAGATTTATAGAGGGAGCATAGTGCAGATTGCTTATGAGCAAGGGGCGGTTGGCGCTTTGGTGTATACGGATAGGAAGGACTACGGCGGAGGAGGCGGAGGGAGGTGGTTTCCGGAGGAGAAGTGGCTGCCGCCGAGTGGGGTACAGGTGGGGACGGTTTACAATGGGATAGGGGACCCGACTACGCCGGGGTGGGCGAGTAGTGAAGAGTGTGAGAGGCTTTCTGATGAGGAAGTGGAGAAGGGTGGGGATTTGACTTTGATACCTTCACTGCCTATTTCTGGTGCTGATGGTGAGACTATTTTGAGGGCCATTGGAGGACAGGTGGCGAATGATGATTGGCAGGGGAGTGGGGATGCCCCGACTTATAGGGTTGGTCCAGGGCCTGGGGTTGTACATCTTAGTTACACTGGGAAGCAAGTTATAGAACAGATTGAGAATGTGATTGGTGTCATAGAAGGTGAAGAAGAACCTGATAGATTTGTCATTCTAGGTAATCACCGGGATGCATGGACATTTGGAGCTGTTGACCCAAATAGTGGCACTGCAGCACTGCTAGAGATTGCTCAAAGATTGGGGAAGTTGCAGGAAAAAGGGTGGAAACCTCGACGCACAATTATCTTGTGCAATTGGGATGCTGAAGAATACGGCCTGATAGGATCAACTGAATGGGTAGAAGAAAACAGAGACATGCTAGCTTCGAGGGCTATTGCTTACTTGAATGTTGACAGTGCAGTATATGCGCCAGGATTCTGGGCCTCTGCCACTCCACAGCTTGATGAACTTCTTAAGCAAGCTACTCAACAGGTCAAAGATCCTGATAACTCTTCACAAACTCTCTACCAAGCATGGATTGGTTCAAGCAGTTCTCCTACAGTAAGAAATTGCTTCACAGAACTCTATAAAACTTCATTGCTGTGTTTAAGAAAAACTGCAATTCATGTCATTTCTGTTCAACCAATCAGCTATCCAAGTCTTGCATTATCTACACATAATAAATGTTGGAAGACGTTTTTCATGAAATGTAATTTTAAACGCTGTATTTTTCATACAAAGATTGGCAGGTTGGGAAGTGGAGAATCTGATTTTGCAGCCTTTGTTCAATATATTGGAATTCCGTCAGCTGACATGGCATTCGGTAAAGGATACCCAGTATACCATTCCATGTATGATGACTTTGTATGGATGGAAAAATTTGGTGATCCTTTCTTTCATAGGCATGTTGCAGTGGCAAGTTTATGGGGTTTGATAGCTCTTTGGCTAGCAGATGCAGAGTTTGTGCCTTTTGATTATACATCCTATGCGCTGGAGCTACAGGTAAGGCAACACTATCTTTCAGTTAACCACTGTATGTCTATATGTACTTTCGAGATAATTAGACGTGTTAGTTACATTCAGTCAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0008150 GO:0009888 GO:0010073 GO:0012505 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048507 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_M28 TFR_dimer

Protein Analysis

647

Amino Acids

71.34

Weight (kDa)

5.54

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PA	PF02225	144 - 228	6.2e-07	PA domain
Peptidase_M28	PF04389	326 - 456	6.9e-18	Peptidase family M28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19740
fragaria_vesca	FvH4_1g06360 FvH4_1g06360 FvH4_6g31420 FvH4_6g31420 FvH4_6g31420
malus_domestica	MD02G1067100.v1.1 MD02G1067200.v1.1
prunus_persica	Prupe.7G218300_v2.0.a1 Prupe.7G218300_v2.0.a1 Prupe.7G218300_v2.0.a1
pyrus_communis	pycom02g05310
rosa_chinensis	RchiOBHm_Chr2g0092051
rosa_laevigata	RLG00000016272
rosa_multiflora	Rmu_sc0000524.1_g000005
rosa_roxburghii	Rroxscaffold_2G00149510
rosa_rugosa	Rorug02G0022600 Rorug02G0022700
rosa_samantha	Rh2AG068300 Rh2BG067600 Rh2CG068900 Rh2DG067200
rosa_wichuraiana	Rw2G005290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1590
AccB7I	CCANNNNNTGG	2 cut(s)	923, 1076
AccBSI	CCGCTC	1 cut(s)	291
AccI	GTMKAC	2 cut(s)	602, 1692
AccII	CGCG	2 cut(s)	23, 160
AccIII	TCCGGA	1 cut(s)	649
AclI	AACGTT	1 cut(s)	504
AclWI	GGATC	3 cut(s)	1204, 1346, 1733
AcsI	RAATTY	2 cut(s)	1650, 1730
AcuI	CTGAAG	2 cut(s)	506, 1197
AcvI	CACGTG	2 cut(s)	265, 442
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	5 cut(s)	89, 514, 681, 933, 1900
AfiI	CCNNNNNNNGG	5 cut(s)	423, 674, 818, 923, 1076
AflII	CTTAAG	1 cut(s)	1325
AflIII	ACRYGT	1 cut(s)	1918
AgeI	ACCGGT	1 cut(s)	434
AgsI	TTSAA	4 cut(s)	1258, 1398, 1493, 1640
AjiI	CACGTC	3 cut(s)	172, 379, 1919
AjnI	CCWGG	3 cut(s)	916, 922, 1282
AluBI	AGCT	8 cut(s)	1061, 1235, 1312, 1334, 1503, 1661, 1790, 1849
AluI	AGCT	8 cut(s)	1061, 1235, 1312, 1334, 1503, 1661, 1790, 1849
Alw26I	GTCTC	3 cut(s)	473, 827, 1218
AlwI	GGATC	3 cut(s)	1204, 1346, 1733
AlwNI	CAGNNNCTG	1 cut(s)	923
Aor13HI	TCCGGA	1 cut(s)	649
AoxI	GGCC	5 cut(s)	267, 846, 920, 1186, 1293
ApeKI	GCWGC	4 cut(s)	383, 664, 1085, 1628
ApoI	RAATTY	2 cut(s)	1650, 1730
ArsI	GACNNNNNNTTYG	2 cut(s)	1655, 1687
AsiGI	ACCGGT	1 cut(s)	434
AspLEI	GCGC	4 cut(s)	162, 593, 1282, 1843
AspS9I	GGNCC	7 cut(s)	268, 391, 712, 846, 914, 920, 1293
AsuC2I	CCSGG	4 cut(s)	360, 424, 726, 1040
AsuNHI	GCTAGC	2 cut(s)	1231, 1798
AvaII	GGWCC	3 cut(s)	391, 712, 914
BaeI	ACNNNNGTAYC	2 cut(s)	504, 537
BbrPI	CACGTG	2 cut(s)	265, 442
BbsI	GAAGAC	1 cut(s)	1550
BbvI	GCAGC	4 cut(s)	395, 651, 1097, 1640
BccI	CCATC	6 cut(s)	140, 227, 290, 335, 821, 1717
BceAI	ACGGC	2 cut(s)	637, 1201
BciT130I	CCWGG	3 cut(s)	918, 924, 1284
BciVI	GTATCC	1 cut(s)	1676
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	4 cut(s)	360, 424, 726, 1040
BcoDI	GTCTC	3 cut(s)	473, 827, 1218
BfaI	CTAG	6 cut(s)	32, 528, 1028, 1094, 1232, 1799
BfmI	CTRYAG	3 cut(s)	1083, 1410, 1850
BfoI	RGCGCY	1 cut(s)	594
BfrI	CTTAAG	1 cut(s)	1325
BfuAI	ACCTGC	1 cut(s)	1590
BfuI	GTATCC	1 cut(s)	1676
BglI	GCCNNNNNGGC	1 cut(s)	23
BisI	GCNGC	9 cut(s)	24, 163, 201, 204, 384, 665, 668, 1086, 1629
BlsI	GCNGC	9 cut(s)	25, 164, 202, 205, 385, 666, 669, 1087, 1630
Bme1390I	CCNGG	7 cut(s)	360, 424, 726, 918, 924, 1040, 1284
Bme18I	GGWCC	3 cut(s)	391, 712, 914
BmgBI	CACGTC	3 cut(s)	172, 379, 1919
BmgT120I	GGNCC	7 cut(s)	268, 391, 712, 846, 914, 920, 1293
BmiI	GGNNCC	3 cut(s)	181, 713, 714
BmrFI	CCNGG	7 cut(s)	360, 424, 726, 918, 924, 1040, 1284
BmrI	ACTGGG	2 cut(s)	957, 1682
BmsI	GCATC	5 cut(s)	258, 883, 1033, 1162, 1795
BmtI	GCTAGC	2 cut(s)	1235, 1802
BmuI	ACTGGG	2 cut(s)	957, 1682
BpiI	GAAGAC	1 cut(s)	1550
BpmI	CTGGAG	1 cut(s)	1865
BpuMI	CCSGG	4 cut(s)	360, 424, 726, 1040
BsaAI	YACGTR	2 cut(s)	265, 442
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	7 cut(s)	21, 358, 387, 423, 725, 917, 923
BsaWI	WCCGGW	2 cut(s)	434, 649
Bsc4I	CCNNNNNNNGG	5 cut(s)	423, 674, 818, 923, 1076
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	2 cut(s)	952, 1688
Bse3DI	GCAATG	1 cut(s)	1448
BseAI	TCCGGA	1 cut(s)	649
BseBI	CCWGG	3 cut(s)	918, 924, 1284
BseDI	CCNNGG	7 cut(s)	21, 358, 387, 423, 725, 917, 923
BseGI	GGATG	6 cut(s)	433, 898, 1048, 1177, 1728, 1832
BseLI	CCNNNNNNNGG	5 cut(s)	423, 674, 818, 923, 1076
BseMI	GCAATG	1 cut(s)	1448
BseNI	ACTGG	2 cut(s)	952, 1688
BseRI	GAGGAG	5 cut(s)	50, 109, 220, 642, 668
BseXI	GCAGC	4 cut(s)	395, 651, 1097, 1640
BsgI	GTGCAG	2 cut(s)	581, 1290
Bsh1236I	CGCG	2 cut(s)	23, 160
BshFI	GGCC	5 cut(s)	269, 848, 922, 1188, 1295
BshTI	ACCGGT	1 cut(s)	434
BsiSI	CCGG	7 cut(s)	177, 360, 423, 435, 650, 725, 1039
BslFI	GGGAC	2 cut(s)	703, 725
BslI	CCNNNNNNNGG	5 cut(s)	423, 674, 818, 923, 1076
BsmAI	GTCTC	3 cut(s)	473, 827, 1218
BsmFI	GGGAC	2 cut(s)	703, 725
BsmI	GAATGC	1 cut(s)	1670
BsnI	GGCC	5 cut(s)	269, 848, 922, 1188, 1295
Bsp13I	TCCGGA	1 cut(s)	649
Bsp1407I	TGTACA	1 cut(s)	931
Bsp143I	GATC	4 cut(s)	3, 1196, 1351, 1738
BspANI	GGCC	5 cut(s)	269, 848, 922, 1188, 1295
BspEI	TCCGGA	1 cut(s)	649
BspFNI	CGCG	2 cut(s)	23, 160
BspHI	TCATGA	1 cut(s)	1554
BspLI	GGNNCC	3 cut(s)	181, 713, 714
BspMAI	CTGCAG	1 cut(s)	1087
BspMI	ACCTGC	1 cut(s)	1590
BspOI	GCTAGC	2 cut(s)	1235, 1802
BspPI	GGATC	3 cut(s)	1204, 1346, 1733
BspTI	CTTAAG	1 cut(s)	1325
BsrBI	CCGCTC	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	1448
BsrFI	RCCGGY	1 cut(s)	434
BsrGI	TGTACA	1 cut(s)	931
BsrI	ACTGG	2 cut(s)	952, 1688
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	7 cut(s)	21, 358, 387, 423, 725, 917, 923
BssMI	GATC	4 cut(s)	3, 1196, 1351, 1738
BssNAI	GTATAC	2 cut(s)	603, 1693
BssNI	GRCGYC	1 cut(s)	198
Bst1107I	GTATAC	2 cut(s)	603, 1693
Bst2UI	CCWGG	3 cut(s)	918, 924, 1284
Bst4CI	ACNGT	4 cut(s)	694, 1268, 1414, 1886
Bst6I	CTCTTC	3 cut(s)	104, 738, 1369
BstACI	GRCGYC	1 cut(s)	198
BstAFI	CTTAAG	1 cut(s)	1325
BstAPI	GCANNNNNTGC	1 cut(s)	1277
BstAUI	TGTACA	1 cut(s)	931
BstBAI	YACGTR	2 cut(s)	265, 442
BstC8I	GCNNGC	3 cut(s)	1233, 1332, 1800
BstDEI	CTNAG	1 cut(s)	938
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	6 cut(s)	433, 898, 1048, 1177, 1728, 1832
BstFNI	CGCG	2 cut(s)	23, 160
BstH2I	RGCGCY	1 cut(s)	594
BstHHI	GCGC	4 cut(s)	162, 593, 1282, 1843
BstKTI	GATC	4 cut(s)	6, 1199, 1354, 1741
BstMAI	GTCTC	3 cut(s)	473, 827, 1218
BstMBI	GATC	4 cut(s)	3, 1196, 1351, 1738
BstMWI	GCNNNNNNNGC	9 cut(s)	23, 32, 200, 380, 590, 630, 1241, 1277, 1667
BstNI	CCWGG	3 cut(s)	918, 924, 1284
BstNSI	RCATGY	2 cut(s)	1231, 1760
BstSCI	CCNGG	7 cut(s)	358, 422, 724, 916, 922, 1038, 1282
BstSFI	CTRYAG	3 cut(s)	1083, 1410, 1850
BstUI	CGCG	2 cut(s)	23, 160
BstV1I	GCAGC	4 cut(s)	395, 651, 1097, 1640
BstV2I	GAAGAC	1 cut(s)	1550
BstX2I	RGATCY	1 cut(s)	1351
BstXI	CCANNNNNNTGG	1 cut(s)	1290
BstYI	RGATCY	1 cut(s)	1351
BstZ17I	GTATAC	2 cut(s)	603, 1693
BsuI	GTATCC	1 cut(s)	1676
BsuRI	GGCC	5 cut(s)	269, 848, 922, 1188, 1295
BtgI	CCRYGG	1 cut(s)	21
BtrI	CACGTC	3 cut(s)	172, 379, 1919
BtsCI	GGATG	6 cut(s)	433, 898, 1048, 1177, 1728, 1832
BtsI	GCAGTG	4 cut(s)	806, 1080, 1088, 1770
BtsIMutI	CAGTG	8 cut(s)	482, 806, 945, 1080, 1088, 1273, 1770, 1882
BveI	ACCTGC	1 cut(s)	1590
Cac8I	GCNNGC	3 cut(s)	1233, 1332, 1800
CaiI	CAGNNNCTG	1 cut(s)	923
CciI	TCATGA	1 cut(s)	1554
CfoI	GCGC	4 cut(s)	162, 593, 1282, 1843
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	7 cut(s)	268, 391, 712, 846, 914, 920, 1293
Cfr42I	CCGCGG	1 cut(s)	24
CseI	GACGC	2 cut(s)	206, 1155
Csp6I	GTAC	5 cut(s)	88, 513, 680, 932, 1899
CspAI	ACCGGT	1 cut(s)	434
CviAII	CATG	8 cut(s)	1047, 1228, 1386, 1478, 1555, 1666, 1702, 1757
CviQI	GTAC	5 cut(s)	88, 513, 680, 932, 1899
DdeI	CTNAG	1 cut(s)	938
DpnI	GATC	4 cut(s)	5, 1198, 1353, 1740
DpnII	GATC	4 cut(s)	3, 1196, 1351, 1738
DraI	TTTAAA	1 cut(s)	1570
Eam1104I	CTCTTC	3 cut(s)	104, 738, 1369
EarI	CTCTTC	3 cut(s)	104, 738, 1369
EciI	GGCGGA	2 cut(s)	639, 648
Eco47I	GGWCC	3 cut(s)	391, 712, 914
Eco57I	CTGAAG	2 cut(s)	506, 1197
Eco72I	CACGTG	2 cut(s)	265, 442
EcoO109I	RGGNCCY	3 cut(s)	391, 712, 920
EcoRI	GAATTC	1 cut(s)	1650
EcoRII	CCWGG	3 cut(s)	916, 922, 1282
EcoT22I	ATGCAT	1 cut(s)	1048
FaeI	CATG	8 cut(s)	1050, 1231, 1389, 1481, 1558, 1669, 1705, 1760
FaqI	GGGAC	2 cut(s)	703, 725
FatI	CATG	8 cut(s)	1046, 1227, 1385, 1477, 1554, 1665, 1701, 1756
FauI	CCCGC	4 cut(s)	146, 193, 254, 296
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	2 cut(s)	602, 1692
Fnu4HI	GCNGC	9 cut(s)	24, 163, 201, 204, 384, 665, 668, 1086, 1629
FokI	GGATG	6 cut(s)	440, 905, 1055, 1184, 1735, 1819
Fsp4HI	GCNGC	9 cut(s)	24, 163, 201, 204, 384, 665, 668, 1086, 1629
FspBI	CTAG	6 cut(s)	32, 528, 1028, 1094, 1232, 1799
GlaI	GCGC	4 cut(s)	161, 592, 1281, 1842
GluI	GCNGC	9 cut(s)	24, 163, 201, 204, 384, 665, 668, 1086, 1629
GsuI	CTGGAG	1 cut(s)	1865
HaeII	RGCGCY	1 cut(s)	594
HaeIII	GGCC	5 cut(s)	269, 848, 922, 1188, 1295
HapII	CCGG	7 cut(s)	177, 360, 423, 435, 650, 725, 1039
HgaI	GACGC	2 cut(s)	206, 1155
HhaI	GCGC	4 cut(s)	162, 593, 1282, 1843
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	8 cut(s)	1050, 1231, 1389, 1481, 1558, 1669, 1705, 1760
Hin6I	GCGC	4 cut(s)	160, 591, 1280, 1841
HinP1I	GCGC	4 cut(s)	160, 591, 1280, 1841
HincII	GTYRAC	6 cut(s)	454, 502, 1066, 1264, 1879, 1938
HindII	GTYRAC	6 cut(s)	454, 502, 1066, 1264, 1879, 1938
HinfI	GANTC	4 cut(s)	110, 498, 1287, 1616
HpaI	GTTAAC	1 cut(s)	1879
HpaII	CCGG	7 cut(s)	177, 360, 423, 435, 650, 725, 1039
Hpy188I	TCNGA	4 cut(s)	72, 109, 763, 1621
Hpy188III	TCNNGA	4 cut(s)	650, 1355, 1555, 1906
Hpy99I	CGWCG	3 cut(s)	176, 200, 1149
HpyAV	CCTTC	8 cut(s)	58, 64, 318, 324, 607, 772, 813, 989
HpyCH4III	ACNGT	4 cut(s)	694, 1268, 1414, 1886
HpyCH4IV	ACGT	9 cut(s)	171, 210, 264, 378, 441, 450, 504, 1547, 1918
HpyF10VI	GCNNNNNNNGC	9 cut(s)	23, 32, 200, 380, 590, 630, 1241, 1277, 1667
HpyF3I	CTNAG	1 cut(s)	938
HpySE526I	ACGT	9 cut(s)	171, 210, 264, 378, 441, 450, 504, 1547, 1918
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	8 cut(s)	1050, 1231, 1389, 1481, 1558, 1669, 1705, 1760
HspAI	GCGC	4 cut(s)	160, 591, 1280, 1841
KflI	GGGWCCC	1 cut(s)	712
Kpn2I	TCCGGA	1 cut(s)	649
Ksp22I	TGATCA	1 cut(s)	3
KspAI	GTTAAC	1 cut(s)	1879
KspI	CCGCGG	1 cut(s)	24
Kzo9I	GATC	4 cut(s)	3, 1196, 1351, 1738
LmnI	GCTCC	4 cut(s)	296, 552, 1058, 1846
Lsp1109I	GCAGC	4 cut(s)	395, 651, 1097, 1640
LweI	GCATC	5 cut(s)	258, 883, 1033, 1162, 1795
MaeI	CTAG	6 cut(s)	32, 528, 1028, 1094, 1232, 1799
MaeII	ACGT	9 cut(s)	171, 210, 264, 378, 441, 450, 504, 1547, 1918
MaeIII	GTNAC	4 cut(s)	430, 437, 941, 1925
MalI	GATC	4 cut(s)	5, 1198, 1353, 1740
MbiI	CCGCTC	1 cut(s)	291
MboI	GATC	4 cut(s)	3, 1196, 1351, 1738
MfeI	CAATTG	1 cut(s)	1165
MflI	RGATCY	1 cut(s)	1351
MluCI	AATT	8 cut(s)	1152, 1165, 1420, 1473, 1564, 1650, 1730, 1911
MlyI	GAGTC	2 cut(s)	104, 507
MmeI	TCCRAC	5 cut(s)	95, 132, 147, 367, 1520
Mph1103I	ATGCAT	1 cut(s)	1048
MroI	TCCGGA	1 cut(s)	649
MseI	TTAA	4 cut(s)	1326, 1460, 1569, 1878
MslI	CAYNNNNRTG	3 cut(s)	1041, 1453, 1755
MspA1I	CMGCKG	2 cut(s)	23, 1661
MspCI	CTTAAG	1 cut(s)	1325
MspI	CCGG	7 cut(s)	177, 360, 423, 435, 650, 725, 1039
MspR9I	CCNGG	7 cut(s)	360, 424, 726, 918, 924, 1040, 1284
MunI	CAATTG	1 cut(s)	1165
Mva1269I	GAATGC	1 cut(s)	1670
MvaI	CCWGG	3 cut(s)	918, 924, 1284
MvnI	CGCG	2 cut(s)	23, 160
MwoI	GCNNNNNNNGC	9 cut(s)	23, 32, 200, 380, 590, 630, 1241, 1277, 1667
NciI	CCSGG	4 cut(s)	360, 424, 726, 1040
NdeII	GATC	4 cut(s)	3, 1196, 1351, 1738
NheI	GCTAGC	2 cut(s)	1231, 1798
NlaIII	CATG	8 cut(s)	1050, 1231, 1389, 1481, 1558, 1669, 1705, 1760
NlaIV	GGNNCC	3 cut(s)	181, 713, 714
NmeAIII	GCCGAG	2 cut(s)	412, 696
NmuCI	GTSAC	2 cut(s)	430, 437
NsiI	ATGCAT	1 cut(s)	1048
NspI	RCATGY	2 cut(s)	1231, 1760
PagI	TCATGA	1 cut(s)	1554
PcsI	WCGNNNNNNNCGW	2 cut(s)	384, 447
PctI	GAATGC	1 cut(s)	1670
PfeI	GAWTC	2 cut(s)	1287, 1616
PflMI	CCANNNNNTGG	2 cut(s)	923, 1076
PinAI	ACCGGT	1 cut(s)	434
PkrI	GCNGC	9 cut(s)	25, 164, 202, 205, 385, 666, 669, 1087, 1630
PleI	GAGTC	2 cut(s)	104, 506
PmaCI	CACGTG	2 cut(s)	265, 442
PmlI	CACGTG	2 cut(s)	265, 442
PpsI	GAGTC	2 cut(s)	104, 506
Ppu21I	YACGTR	2 cut(s)	265, 442
PpuMI	RGGWCCY	2 cut(s)	391, 712
Psp1406I	AACGTT	1 cut(s)	504
Psp5II	RGGWCCY	2 cut(s)	391, 712
Psp6I	CCWGG	3 cut(s)	916, 922, 1282
PspCI	CACGTG	2 cut(s)	265, 442
PspGI	CCWGG	3 cut(s)	916, 922, 1282
PspN4I	GGNNCC	3 cut(s)	181, 713, 714
PspPI	GGNCC	7 cut(s)	268, 391, 712, 846, 914, 920, 1293
PspPPI	RGGWCCY	2 cut(s)	391, 712
PstI	CTGCAG	1 cut(s)	1087
PstNI	CAGNNNCTG	1 cut(s)	923
PsuI	RGATCY	1 cut(s)	1351
PvuII	CAGCTG	1 cut(s)	1661
RsaI	GTAC	5 cut(s)	89, 514, 681, 933, 1900
RsaNI	GTAC	5 cut(s)	88, 513, 680, 932, 1899
RseI	CAYNNNNRTG	3 cut(s)	1041, 1453, 1755
SacII	CCGCGG	1 cut(s)	24
SaqAI	TTAA	4 cut(s)	1326, 1460, 1569, 1878
SatI	GCNGC	9 cut(s)	24, 163, 201, 204, 384, 665, 668, 1086, 1629
Sau3AI	GATC	4 cut(s)	3, 1196, 1351, 1738
Sau96I	GGNCC	7 cut(s)	268, 391, 712, 846, 914, 920, 1293
SchI	GAGTC	2 cut(s)	104, 507
ScrFI	CCNGG	7 cut(s)	360, 424, 726, 918, 924, 1040, 1284
SfaNI	GCATC	5 cut(s)	258, 883, 1033, 1162, 1795
SfcI	CTRYAG	3 cut(s)	1083, 1410, 1850
Sfr303I	CCGCGG	1 cut(s)	24
SgrBI	CCGCGG	1 cut(s)	24
SinI	GGWCC	3 cut(s)	391, 712, 914
SmiMI	CAYNNNNRTG	3 cut(s)	1041, 1453, 1755
SmlI	CTYRAG	1 cut(s)	1325
SmoI	CTYRAG	1 cut(s)	1325
Sse9I	AATT	8 cut(s)	1152, 1165, 1420, 1473, 1564, 1650, 1730, 1911
SspMI	CTAG	6 cut(s)	32, 528, 1028, 1094, 1232, 1799
StyD4I	CCNGG	7 cut(s)	358, 422, 724, 916, 922, 1038, 1282
TaaI	ACNGT	4 cut(s)	694, 1268, 1414, 1886
TaiI	ACGT	9 cut(s)	174, 213, 267, 381, 444, 453, 507, 1550, 1921
TaqI	TCGA	4 cut(s)	336, 1144, 1238, 1905
TasI	AATT	8 cut(s)	1152, 1165, 1420, 1473, 1564, 1650, 1730, 1911
TatI	WGTACW	2 cut(s)	931, 1898
TauI	GCSGC	5 cut(s)	26, 165, 203, 206, 670
TfiI	GAWTC	2 cut(s)	1287, 1616
Tru1I	TTAA	4 cut(s)	1326, 1460, 1569, 1878
Tru9I	TTAA	4 cut(s)	1326, 1460, 1569, 1878
TscAI	CASTG	8 cut(s)	489, 813, 952, 1087, 1095, 1273, 1770, 1889
TseFI	GTSAC	2 cut(s)	430, 437
TseI	GCWGC	4 cut(s)	383, 664, 1085, 1628
Tsp45I	GTSAC	2 cut(s)	430, 437
TspDTI	ATGAA	9 cut(s)	91, 306, 1332, 1437, 1466, 1543, 1571, 1574, 1739
TspGWI	ACGGA	2 cut(s)	620, 1644
TspRI	CASTG	8 cut(s)	489, 813, 952, 1087, 1095, 1273, 1770, 1889
Van91I	CCANNNNNTGG	2 cut(s)	923, 1076
Vha464I	CTTAAG	1 cut(s)	1325
VpaK11BI	GGWCC	3 cut(s)	391, 712, 914
XapI	RAATTY	2 cut(s)	1650, 1730
XceI	RCATGY	2 cut(s)	1231, 1760
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1388
XmiI	GTMKAC	2 cut(s)	602, 1692
XspI	CTAG	6 cut(s)	32, 528, 1028, 1094, 1232, 1799
Zsp2I	ATGCAT	1 cut(s)	1048

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.