Rh3AG316700

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0018165
Physical Location & Seq
Reverse (-)
43344901 .. 43366736
21836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG316700.1

Sequence Viewer

Length: 219 bp
ATGATGGACTTCAATAACCTTCTCGAGTTCAAGAACGACGACCCACTCCTCAACCCTCTGCTAAGAAAAGGCATGGAACCTTTGGAAATGAAGTTGCTACGGCGCTTGGCGGTGGTACTGTACCAGGTGGAGTATTATTTCAGTGATCTGAACTTAGCTACTACTGATCATCTTATGAGGTTCATAAACAAAGACCCGGAAGGATTTGGTAATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La PAM2 RRM_1

Protein Analysis

72

Amino Acids

8.59

Weight (kDa)

4.9

Isoelectric Point (pI)

23.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 40 - 69 6.7e-09 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018165)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0114761 RchiOBHm_Chr6g0277201
rosa_multiflora Rmu_sc0001218.1_g000043 Rmu_sc0001408.1_g000023
rosa_roxburghii Rroxscaffold_6G00399270
rosa_samantha Rh2CG253800 Rh3AG316700 Rh5BG392000 Rh5CG262300 Rh6AG315600
rosa_wichuraiana Rw1G004620

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 110
AfaI GTAC 2 cut(s) 117, 122
AgsI TTSAA 2 cut(s) 13, 31
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
Ama87I CYCGRG 1 cut(s) 23
AspLEI GCGC 1 cut(s) 105
AsuC2I CCSGG 1 cut(s) 197
AvaI CYCGRG 1 cut(s) 23
BceAI ACGGC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 125
BclI TGATCA 1 cut(s) 166
BcnI CCSGG 1 cut(s) 197
BfoI RGCGCY 1 cut(s) 106
Bme1390I CCNGG 2 cut(s) 125, 197
BmeT110I CYCGRG 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 2 cut(s) 125, 197
BpuMI CCSGG 1 cut(s) 197
BseBI CCWGG 1 cut(s) 125
BseRI GAGGAG 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 23
Bsp143I GATC 2 cut(s) 145, 166
BspACI CCGC 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 78
BssMI GATC 2 cut(s) 145, 166
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 120
BstDEI CTNAG 2 cut(s) 62, 154
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 2 cut(s) 148, 169
BstMBI GATC 2 cut(s) 145, 166
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 2 cut(s) 123, 195
BtsIMutI CAGTG 1 cut(s) 148
CfoI GCGC 1 cut(s) 105
CsiI ACCWGGT 1 cut(s) 123
Csp6I GTAC 2 cut(s) 116, 121
CviAII CATG 1 cut(s) 73
CviJI RGCY 1 cut(s) 158
CviKI_1 RGCY 1 cut(s) 158
CviQI GTAC 2 cut(s) 116, 121
DdeI CTNAG 2 cut(s) 62, 154
DpnI GATC 2 cut(s) 147, 168
DpnII GATC 2 cut(s) 145, 166
Eco88I CYCGRG 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 123
FaeI CATG 1 cut(s) 76
FaiI YATR 3 cut(s) 74, 176, 185
FatI CATG 1 cut(s) 72
FbaI TGATCA 1 cut(s) 166
GlaI GCGC 1 cut(s) 104
HaeII RGCGCY 1 cut(s) 106
HapII CCGG 1 cut(s) 197
HhaI GCGC 1 cut(s) 105
Hin1II CATG 1 cut(s) 76
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HpaII CCGG 1 cut(s) 197
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 2 cut(s) 23, 31
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 2 cut(s) 29, 194
HpyCH4III ACNGT 1 cut(s) 120
HpyF3I CTNAG 2 cut(s) 62, 154
Hsp92II CATG 1 cut(s) 76
HspAI GCGC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 2 cut(s) 145, 166
LpnPI CCDG 3 cut(s) 110, 137, 210
MabI ACCWGGT 1 cut(s) 123
MalI GATC 2 cut(s) 147, 168
MboI GATC 2 cut(s) 145, 166
MluCI AATT 1 cut(s) 211
MnlI CCTC 3 cut(s) 59, 66, 171
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 2 cut(s) 125, 197
MvaI CCWGG 1 cut(s) 125
NciI CCSGG 1 cut(s) 197
NdeII GATC 2 cut(s) 145, 166
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 78
PaeR7I CTCGAG 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 78
RsaI GTAC 2 cut(s) 117, 122
RsaNI GTAC 2 cut(s) 116, 121
Sau3AI GATC 2 cut(s) 145, 166
ScrFI CCNGG 2 cut(s) 125, 197
SetI ASST 5 cut(s) 21, 82, 129, 160, 182
SexAI ACCWGGT 1 cut(s) 123
Sfr274I CTCGAG 1 cut(s) 23
SgeI CNNG 9 cut(s) 35, 37, 43, 85, 118, 136, 137, 208, 209
SlaI CTCGAG 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 1 cut(s) 211
SsiI CCGC 1 cut(s) 110
StyD4I CCNGG 2 cut(s) 123, 195
TaaI ACNGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 24
TasI AATT 1 cut(s) 211
TscAI CASTG 1 cut(s) 148
TspDTI ATGAA 2 cut(s) 104, 172
TspRI CASTG 1 cut(s) 148
XhoI CTCGAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.