RNA polymerase II transcriptional coactivator
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0114761 RchiOBHm_Chr6g0277201 |
| rosa_multiflora | Rmu_sc0001218.1_g000043 Rmu_sc0001408.1_g000023 |
| rosa_roxburghii | Rroxscaffold_6G00399270 |
| rosa_samantha | Rh2CG253800 Rh3AG316700 Rh5BG392000 Rh5CG262300 Rh6AG315600 |
| rosa_wichuraiana | Rw1G004620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 225 |
| AgsI | TTSAA | 2 cut(s) | 38, 46 |
| AluBI | AGCT | 3 cut(s) | 10, 100, 164 |
| AluI | AGCT | 3 cut(s) | 10, 100, 164 |
| Alw21I | GWGCWC | 1 cut(s) | 102 |
| ApeKI | GCWGC | 1 cut(s) | 7 |
| AsuHPI | GGTGA | 1 cut(s) | 40 |
| BanII | GRGCYC | 1 cut(s) | 102 |
| Bbv12I | GWGCWC | 1 cut(s) | 102 |
| BbvI | GCAGC | 1 cut(s) | 19 |
| BclI | TGATCA | 1 cut(s) | 172 |
| BisI | GCNGC | 1 cut(s) | 8 |
| BlsI | GCNGC | 1 cut(s) | 9 |
| BseXI | GCAGC | 1 cut(s) | 19 |
| BsiHKAI | GWGCWC | 1 cut(s) | 102 |
| Bsp1286I | GDGCHC | 1 cut(s) | 102 |
| Bsp143I | GATC | 2 cut(s) | 151, 172 |
| BssMI | GATC | 2 cut(s) | 151, 172 |
| Bst4CI | ACNGT | 1 cut(s) | 34 |
| BstDEI | CTNAG | 1 cut(s) | 160 |
| BstKTI | GATC | 2 cut(s) | 154, 175 |
| BstMBI | GATC | 2 cut(s) | 151, 172 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 13 |
| BstV1I | GCAGC | 1 cut(s) | 19 |
| BtsIMutI | CAGTG | 1 cut(s) | 154 |
| CviJI | RGCY | 3 cut(s) | 10, 100, 164 |
| CviKI_1 | RGCY | 3 cut(s) | 10, 100, 164 |
| DdeI | CTNAG | 1 cut(s) | 160 |
| DpnI | GATC | 2 cut(s) | 153, 174 |
| DpnII | GATC | 2 cut(s) | 151, 172 |
| Ecl136II | GAGCTC | 1 cut(s) | 100 |
| Eco24I | GRGCYC | 1 cut(s) | 102 |
| Eco53kI | GAGCTC | 1 cut(s) | 100 |
| Eco57I | CTGAAG | 1 cut(s) | 225 |
| EcoICRI | GAGCTC | 1 cut(s) | 100 |
| EcoT38I | GRGCYC | 1 cut(s) | 102 |
| FaiI | YATR | 4 cut(s) | 18, 129, 182, 191 |
| FbaI | TGATCA | 1 cut(s) | 172 |
| Fnu4HI | GCNGC | 1 cut(s) | 8 |
| FriOI | GRGCYC | 1 cut(s) | 102 |
| Fsp4HI | GCNGC | 1 cut(s) | 8 |
| GluI | GCNGC | 1 cut(s) | 8 |
| HinfI | GANTC | 1 cut(s) | 122 |
| HphI | GGTGA | 1 cut(s) | 40 |
| Hpy188I | TCNGA | 1 cut(s) | 156 |
| Hpy188III | TCNNGA | 1 cut(s) | 38 |
| HpyAV | CCTTC | 3 cut(s) | 19, 83, 200 |
| HpyCH4III | ACNGT | 1 cut(s) | 34 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 13 |
| HpyF3I | CTNAG | 1 cut(s) | 160 |
| Ksp22I | TGATCA | 1 cut(s) | 172 |
| Kzo9I | GATC | 2 cut(s) | 151, 172 |
| LmnI | GCTCC | 2 cut(s) | 97, 105 |
| LpnPI | CCDG | 1 cut(s) | 216 |
| Lsp1109I | GCAGC | 1 cut(s) | 19 |
| MaeIII | GTNAC | 1 cut(s) | 28 |
| MalI | GATC | 2 cut(s) | 153, 174 |
| MboI | GATC | 2 cut(s) | 151, 172 |
| MhlI | GDGCHC | 1 cut(s) | 102 |
| MluCI | AATT | 1 cut(s) | 217 |
| MlyI | GAGTC | 1 cut(s) | 116 |
| MnlI | CCTC | 3 cut(s) | 15, 63, 177 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 13 |
| NdeII | GATC | 2 cut(s) | 151, 172 |
| NmuCI | GTSAC | 1 cut(s) | 28 |
| PkrI | GCNGC | 1 cut(s) | 9 |
| PleI | GAGTC | 1 cut(s) | 116 |
| PpsI | GAGTC | 1 cut(s) | 116 |
| Psp124BI | GAGCTC | 1 cut(s) | 102 |
| SacI | GAGCTC | 1 cut(s) | 102 |
| SatI | GCNGC | 1 cut(s) | 8 |
| Sau3AI | GATC | 2 cut(s) | 151, 172 |
| SchI | GAGTC | 1 cut(s) | 116 |
| SduI | GDGCHC | 1 cut(s) | 102 |
| SetI | ASST | 5 cut(s) | 12, 30, 102, 166, 188 |
| SgeI | CNNG | 4 cut(s) | 50, 58, 106, 215 |
| Sse9I | AATT | 1 cut(s) | 217 |
| SstI | GAGCTC | 1 cut(s) | 102 |
| TaaI | ACNGT | 1 cut(s) | 34 |
| TasI | AATT | 1 cut(s) | 217 |
| TscAI | CASTG | 1 cut(s) | 154 |
| TseFI | GTSAC | 1 cut(s) | 28 |
| TseI | GCWGC | 1 cut(s) | 7 |
| Tsp45I | GTSAC | 1 cut(s) | 28 |
| TspDTI | ATGAA | 1 cut(s) | 178 |
| TspRI | CASTG | 1 cut(s) | 154 |