Rh5CG262300

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0018165
Physical Location & Seq
Forward (+)
28000494 .. 28002127
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG262300.1

Sequence Viewer

Length: 360 bp
ATGTCAGAGCAAAGCAAAACTCGCTCAGCACGGATGGACGATGAGGAGTCCAAAGTAGCAGAGGAGAGCAACCAGGAGCGTGGGTTCGATGAAAATGGCGATCTCGTGATTTGTAGGGCAAGGAGCTCCCTACTTCTAAAGGTGGAGTATTATTTCAGTGATCTGAACTTAGCTACTACTGATCATCTTATAAGGTTCATAAACAAAGACCCTGAAGGATTTGTGCCAATATCTGTTGTTGCATCTTTCAAGAAGATTAAGGCCCTCGTAAGTAGTCATTCCCAGCTTGCAACTGTATTGCGGAACTCCTCAAAGCTTTGTGAAGACAATTCGTACTTGCCAGCCGCAAACCTCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La PAM2 RRM_1

Protein Analysis

119

Amino Acids

13.36

Weight (kDa)

5.69

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 47 - 102 5.3e-19 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018165)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0114761 RchiOBHm_Chr6g0277201
rosa_multiflora Rmu_sc0001218.1_g000043 Rmu_sc0001408.1_g000023
rosa_roxburghii Rroxscaffold_6G00399270
rosa_samantha Rh2CG253800 Rh3AG316700 Rh5BG392000 Rh5CG262300 Rh6AG315600
rosa_wichuraiana Rw1G004620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 191
AciI CCGC 2 cut(s) 301, 345
AcuI CTGAAG 1 cut(s) 234
AfaI GTAC 1 cut(s) 335
AgsI TTSAA 1 cut(s) 250
AjnI CCWGG 1 cut(s) 72
AloI GAACNNNNNNTCC 2 cut(s) 68, 100
AluBI AGCT 4 cut(s) 126, 173, 286, 316
AluI AGCT 4 cut(s) 126, 173, 286, 316
Alw21I GWGCWC 1 cut(s) 128
AoxI GGCC 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 262
BanII GRGCYC 1 cut(s) 128
BauI CACGAG 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 128
BccI CCATC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 74
BclI TGATCA 1 cut(s) 181
BisI GCNGC 1 cut(s) 345
BlpI GCTNAGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 346
Bme1390I CCNGG 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 262
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 1 cut(s) 251
BpiI GAAGAC 1 cut(s) 330
Bpu1102I GCTNAGC 1 cut(s) 25
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
BseBI CCWGG 1 cut(s) 74
BseGI GGATG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 39
BseRI GAGGAG 3 cut(s) 59, 77, 298
BseYI CCCAGC 1 cut(s) 282
BshFI GGCC 1 cut(s) 263
BsiHKAI GWGCWC 1 cut(s) 128
BsnI GGCC 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 3 cut(s) 100, 160, 181
Bsp1720I GCTNAGC 1 cut(s) 25
BspACI CCGC 2 cut(s) 301, 345
BspANI GGCC 1 cut(s) 263
BspCNI CTCAG 1 cut(s) 38
BssMI GATC 3 cut(s) 100, 160, 181
BssSI CACGAG 1 cut(s) 104
Bst2BI CACGAG 1 cut(s) 104
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 295
BstC8I GCNNGC 2 cut(s) 288, 342
BstDEI CTNAG 2 cut(s) 25, 169
BstF5I GGATG 1 cut(s) 39
BstKTI GATC 3 cut(s) 103, 163, 184
BstMBI GATC 3 cut(s) 100, 160, 181
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstV2I GAAGAC 1 cut(s) 330
BstXI CCANNNNNNTGG 1 cut(s) 80
BsuRI GGCC 1 cut(s) 263
BtsCI GGATG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 163
Cac8I GCNNGC 2 cut(s) 288, 342
Cfr13I GGNCC 1 cut(s) 262
Csp6I GTAC 1 cut(s) 334
CviJI RGCY 6 cut(s) 126, 173, 263, 286, 316, 344
CviKI_1 RGCY 6 cut(s) 126, 173, 263, 286, 316, 344
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 2 cut(s) 25, 169
DpnI GATC 3 cut(s) 102, 162, 183
DpnII GATC 3 cut(s) 100, 160, 181
Ecl136II GAGCTC 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 128
Eco53kI GAGCTC 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 234
EcoICRI GAGCTC 1 cut(s) 126
EcoO109I RGGNCCY 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 128
FaiI YATR 2 cut(s) 191, 200
FbaI TGATCA 1 cut(s) 181
Fnu4HI GCNGC 1 cut(s) 345
FokI GGATG 1 cut(s) 46
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 345
GluI GCNGC 1 cut(s) 345
GsaI CCCAGC 1 cut(s) 286
HaeIII GGCC 1 cut(s) 263
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 1 cut(s) 47
Hpy188I TCNGA 2 cut(s) 7, 165
Hpy188III TCNNGA 2 cut(s) 106, 250
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4V TGCA 2 cut(s) 242, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpyF3I CTNAG 2 cut(s) 25, 169
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 3 cut(s) 100, 160, 181
LmnI GCTCC 3 cut(s) 76, 123, 131
LpnPI CCDG 5 cut(s) 59, 86, 225, 296, 354
LweI GCATC 1 cut(s) 251
MalI GATC 3 cut(s) 102, 162, 183
MboI GATC 3 cut(s) 100, 160, 181
MboII GAAGA 2 cut(s) 265, 335
MhlI GDGCHC 1 cut(s) 128
MluCI AATT 1 cut(s) 328
MlyI GAGTC 1 cut(s) 56
MnlI CCTC 4 cut(s) 37, 55, 275, 319
MseI TTAA 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 21
NdeII GATC 3 cut(s) 100, 160, 181
PkrI GCNGC 1 cut(s) 346
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
PsiI TTATAA 1 cut(s) 191
Psp124BI GAGCTC 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 72
PspFI CCCAGC 1 cut(s) 282
PspGI CCWGG 1 cut(s) 72
PspPI GGNCC 1 cut(s) 262
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
SacI GAGCTC 1 cut(s) 128
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 1 cut(s) 345
Sau3AI GATC 3 cut(s) 100, 160, 181
Sau96I GGNCC 1 cut(s) 262
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 128
SetI ASST 7 cut(s) 128, 144, 175, 197, 288, 318, 354
SfaNI GCATC 1 cut(s) 251
Sse9I AATT 1 cut(s) 328
SsiI CCGC 2 cut(s) 301, 345
SstI GAGCTC 1 cut(s) 128
StyD4I CCNGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 295
TaqI TCGA 1 cut(s) 87
TasI AATT 1 cut(s) 328
TauI GCSGC 1 cut(s) 347
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 1 cut(s) 163
TspDTI ATGAA 2 cut(s) 105, 187
TspGWI ACGGA 1 cut(s) 46
TspRI CASTG 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.