Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0018165

Physical Location & Seq

Genomic Coordinates Reverse (-)

8878258 .. 8879857

Gene Structure 1600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G004620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGGGGCAGCCTTCGCATAAGAGGAAGGTGACAGTTCAAGAGTTCAAGGAGAAACCATTGGTGTCGTTGAGGGAGTTTTTTACTAAAGAAGGCAAGGAGCTCCCTACTTCTAAAGTGACATTTCCGATATCACTTTCACGGCGTTCTTGGATGTACTTTAATGGCGCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C PC4

Protein Analysis

57

Amino Acids

6.71

Weight (kDa)

10.21

Isoelectric Point (pI)

56.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC4	PF02229	5 - 50	5.2e-12	Transcriptional Coactivator p15 (PC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0018165)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0114761 RchiOBHm_Chr6g0277201
rosa_multiflora	Rmu_sc0001218.1_g000043 Rmu_sc0001408.1_g000023
rosa_roxburghii	Rroxscaffold_6G00399270
rosa_samantha	Rh2CG253800 Rh3AG316700 Rh5BG392000 Rh5CG262300 Rh6AG315600
rosa_wichuraiana	Rw1G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	38, 46
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
Alw21I	GWGCWC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	7
AspLEI	GCGC	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	19
BceAI	ACGGC	1 cut(s)	155
BisI	GCNGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	9
BseGI	GGATG	1 cut(s)	156
BseXI	GCAGC	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	167
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	156
CfoI	GCGC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	154
CviJI	RGCY	2 cut(s)	10, 100
CviKI_1	RGCY	2 cut(s)	10, 100
CviQI	GTAC	1 cut(s)	154
Ecl136II	GAGCTC	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	102
Eco32I	GATATC	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	100
EcoRV	GATATC	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	102
FaiI	YATR	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	8
FokI	GGATG	1 cut(s)	163
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	8
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	1 cut(s)	8
HhaI	GCGC	1 cut(s)	167
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HphI	GGTGA	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	1 cut(s)	38
HpyAV	CCTTC	3 cut(s)	19, 21, 83
HpyCH4III	ACNGT	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
HspAI	GCGC	1 cut(s)	165
LmnI	GCTCC	2 cut(s)	97, 105
Lsp1109I	GCAGC	1 cut(s)	19
MaeIII	GTNAC	2 cut(s)	28, 115
MhlI	GDGCHC	1 cut(s)	102
MnlI	CCTC	2 cut(s)	15, 63
MseI	TTAA	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	13
NmuCI	GTSAC	2 cut(s)	28, 115
PkrI	GCNGC	1 cut(s)	9
Psp124BI	GAGCTC	1 cut(s)	102
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	1 cut(s)	8
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	2 cut(s)	30, 102
SgeI	CNNG	5 cut(s)	50, 58, 106, 150, 159
SstI	GAGCTC	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	34
TatI	WGTACW	1 cut(s)	153
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TseFI	GTSAC	2 cut(s)	28, 115
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	2 cut(s)	28, 115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.