Rh3BG319100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0019397
Physical Location & Seq
Reverse (-)
32734841 .. 32735370
530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG319100.1

Sequence Viewer

Length: 288 bp
ATGGAGACCAGTCGTCATCTTCACCCGGCTGAGTTCCACTACGTCAACTCACGCCTCGAGGCCTTTGCGCAAGCTCGAGAGCCTCCTTGCCAGTGCTCCAGTCGACTATCTTCGAGCTTATTTTTCCGACCGCAGCCACCACTGTGCGCTCGAGCAGCTCAGGAGAATTCTCAAGCTCCAGTTACTCCAAGACCAACAACGACTCAACCAAAGCGGTCAAATCGTCGCGGCTGGACTCTTGTGTGCTCTATGTGGTTTCCAAAAAGATGGGATAAGACCAATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

11.03

Weight (kDa)

10.5

Isoelectric Point (pI)

74.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019397)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0447451
rosa_samantha Rh3BG319100 Rh3CG315900 Rh3CG317200 Rh3DG315400 Rh6CG229400 Rh6DG343100 Rh6DG430600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 56
Acc16I TGCGCA 1 cut(s) 69
AccI GTMKAC 1 cut(s) 103
AccII CGCG 1 cut(s) 228
AciI CCGC 3 cut(s) 131, 214, 228
AcsI RAATTY 1 cut(s) 166
AhdI GACNNNNNGTC 1 cut(s) 12
AleI CACNNNNGTG 1 cut(s) 142
AluBI AGCT 4 cut(s) 74, 117, 158, 176
AluI AGCT 4 cut(s) 74, 117, 158, 176
Alw21I GWGCWC 2 cut(s) 98, 248
Ama87I CYCGRG 3 cut(s) 56, 75, 150
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 133, 155
ApoI RAATTY 1 cut(s) 166
AspLEI GCGC 2 cut(s) 70, 149
AsuC2I CCSGG 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 14
AvaI CYCGRG 3 cut(s) 56, 75, 150
Bbv12I GWGCWC 2 cut(s) 98, 248
BbvI GCAGC 2 cut(s) 145, 167
BccI CCATC 1 cut(s) 261
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BcnI CCSGG 1 cut(s) 26
BisI GCNGC 3 cut(s) 134, 156, 229
BlsI GCNGC 3 cut(s) 135, 157, 230
Bme1390I CCNGG 1 cut(s) 26
BmeRI GACNNNNNGTC 1 cut(s) 12
BmeT110I CYCGRG 3 cut(s) 56, 75, 150
BmrFI CCNGG 1 cut(s) 26
BpmI CTGGAG 2 cut(s) 82, 162
Bpu10I CCTNAGC 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 156
BpuMI CCSGG 1 cut(s) 26
Bse1I ACTGG 4 cut(s) 9, 91, 99, 179
BseMII CTCAG 2 cut(s) 21, 173
BseNI ACTGG 4 cut(s) 9, 91, 99, 179
BseXI GCAGC 2 cut(s) 145, 167
Bsh1236I CGCG 1 cut(s) 228
Bsh1285I CGRYCG 1 cut(s) 131
BshFI GGCC 1 cut(s) 62
BsiEI CGRYCG 1 cut(s) 131
BsiHKAI GWGCWC 2 cut(s) 98, 248
BsiHKCI CYCGRG 3 cut(s) 56, 75, 150
BsiSI CCGG 1 cut(s) 26
BsnI GGCC 1 cut(s) 62
BsoBI CYCGRG 3 cut(s) 56, 75, 150
Bsp1286I GDGCHC 2 cut(s) 98, 248
BspACI CCGC 3 cut(s) 131, 214, 228
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 2 cut(s) 22, 172
BspFNI CGCG 1 cut(s) 228
BsrI ACTGG 4 cut(s) 9, 91, 99, 179
Bst4CI ACNGT 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 2 cut(s) 30, 159
BstFNI CGCG 1 cut(s) 228
BstHHI GCGC 2 cut(s) 70, 149
BstMCI CGRYCG 1 cut(s) 131
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 24
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 2 cut(s) 145, 167
BstXI CCANNNNNNTGG 1 cut(s) 267
BsuRI GGCC 1 cut(s) 62
BtsIMutI CAGTG 2 cut(s) 98, 140
Cac8I GCNNGC 1 cut(s) 72
CfoI GCGC 2 cut(s) 70, 149
CviJI RGCY 9 cut(s) 29, 62, 74, 82, 117, 136, 158, 176, 231
CviKI_1 RGCY 9 cut(s) 29, 62, 74, 82, 117, 136, 158, 176, 231
DdeI CTNAG 2 cut(s) 30, 159
DriI GACNNNNNGTC 1 cut(s) 12
Eam1105I GACNNNNNGTC 1 cut(s) 12
Eco147I AGGCCT 1 cut(s) 62
Eco88I CYCGRG 3 cut(s) 56, 75, 150
EcoRI GAATTC 1 cut(s) 166
FaiI YATR 1 cut(s) 251
FblI GTMKAC 1 cut(s) 103
Fnu4HI GCNGC 3 cut(s) 134, 156, 229
Fsp4HI GCNGC 3 cut(s) 134, 156, 229
FspI TGCGCA 1 cut(s) 69
GlaI GCGC 2 cut(s) 69, 148
GluI GCNGC 3 cut(s) 134, 156, 229
GsuI CTGGAG 2 cut(s) 82, 162
HaeIII GGCC 1 cut(s) 62
HapII CCGG 1 cut(s) 26
HhaI GCGC 2 cut(s) 70, 149
Hin6I GCGC 2 cut(s) 68, 147
HinP1I GCGC 2 cut(s) 68, 147
HincII GTYRAC 2 cut(s) 46, 104
HindII GTYRAC 2 cut(s) 46, 104
HinfI GANTC 2 cut(s) 202, 235
HpaII CCGG 1 cut(s) 26
HphI GGTGA 1 cut(s) 14
Hpy166II GTNNAC 2 cut(s) 46, 104
Hpy188I TCNGA 1 cut(s) 128
Hpy188III TCNNGA 2 cut(s) 77, 161
Hpy8I GTNNAC 2 cut(s) 46, 104
Hpy99I CGWCG 1 cut(s) 228
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4IV ACGT 1 cut(s) 42
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 2 cut(s) 30, 159
HpySE526I ACGT 1 cut(s) 42
HspAI GCGC 2 cut(s) 68, 147
LmnI GCTCC 2 cut(s) 101, 181
LpnPI CCDG 7 cut(s) 22, 39, 104, 112, 146, 192, 217
Lsp1109I GCAGC 2 cut(s) 145, 167
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 181
MboII GAAGA 2 cut(s) 11, 102
MhlI GDGCHC 2 cut(s) 98, 248
MluCI AATT 1 cut(s) 166
MlyI GAGTC 2 cut(s) 196, 229
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 3 cut(s) 52, 65, 93
MslI CAYNNNNRTG 1 cut(s) 142
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 26
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 155
NciI CCSGG 1 cut(s) 26
NsbI TGCGCA 1 cut(s) 69
OliI CACNNNNGTG 1 cut(s) 142
PaeR7I CTCGAG 3 cut(s) 56, 75, 150
PceI AGGCCT 1 cut(s) 62
PkrI GCNGC 3 cut(s) 135, 157, 230
PleI GAGTC 2 cut(s) 196, 229
PpsI GAGTC 2 cut(s) 196, 229
PspXI VCTCGAGB 2 cut(s) 56, 150
RseI CAYNNNNRTG 1 cut(s) 142
SalI GTCGAC 1 cut(s) 102
SatI GCNGC 3 cut(s) 134, 156, 229
SchI GAGTC 2 cut(s) 196, 229
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 2 cut(s) 98, 248
SetI ASST 5 cut(s) 45, 76, 119, 160, 178
Sfr274I CTCGAG 3 cut(s) 56, 75, 150
SlaI CTCGAG 3 cut(s) 56, 75, 150
SmiMI CAYNNNNRTG 1 cut(s) 142
SmlI CTYRAG 4 cut(s) 56, 75, 150, 171
SmoI CTYRAG 4 cut(s) 56, 75, 150, 171
Sse9I AATT 1 cut(s) 166
SseBI AGGCCT 1 cut(s) 62
SsiI CCGC 3 cut(s) 131, 214, 228
StuI AGGCCT 1 cut(s) 62
StyD4I CCNGG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 144
TaiI ACGT 1 cut(s) 45
TaqI TCGA 5 cut(s) 57, 76, 103, 113, 151
TasI AATT 1 cut(s) 166
TauI GCSGC 1 cut(s) 231
TscAI CASTG 2 cut(s) 98, 147
TseI GCWGC 2 cut(s) 133, 155
TspRI CASTG 2 cut(s) 98, 147
XapI RAATTY 1 cut(s) 166
XhoI CTCGAG 3 cut(s) 56, 75, 150
XmiI GTMKAC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.