Rh3CG317200

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0019397
Physical Location & Seq
Reverse (-)
33948520 .. 33949008
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG317200.1

Sequence Viewer

Length: 294 bp
ATGGAGACCAGTCGTCATCTTCACCAGGCTGGGTTCCACTACGTCAACTCACGCCTCGAGGCCAGTGCTCCAATCGACTATCTTCGAGCTTATTTTTTCGACCGCAGCCACCACTGTGCGATCGAGCAGCTCAGGAGAATTCTCAAGGTCTTCACTTGGCTTAAGCTGCTTGTATTGTTGATCGAAGTCTCCAGCTCCAGTTACTCCAAGACCAACAACGACTCAACCAAAGCGGTCAAATTGTCACGGCTGGACTCTTGTGTGCTCTATGTGGTTTCCAAAAAGATGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4

Protein Analysis

97

Amino Acids

11.22

Weight (kDa)

9.59

Isoelectric Point (pI)

61.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019397)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0447451
rosa_samantha Rh3BG319100 Rh3CG315900 Rh3CG317200 Rh3DG315400 Rh6CG229400 Rh6DG343100 Rh6DG430600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 56
AciI CCGC 2 cut(s) 103, 233
AcsI RAATTY 1 cut(s) 138
AflII CTTAAG 1 cut(s) 161
AhdI GACNNNNNGTC 1 cut(s) 12
AjnI CCWGG 1 cut(s) 24
AleI CACNNNNGTG 1 cut(s) 114
AluBI AGCT 4 cut(s) 89, 130, 166, 195
AluI AGCT 4 cut(s) 89, 130, 166, 195
Alw21I GWGCWC 2 cut(s) 70, 267
Alw26I GTCTC 1 cut(s) 193
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 3 cut(s) 105, 127, 166
ApoI RAATTY 1 cut(s) 138
AsuHPI GGTGA 1 cut(s) 14
AvaI CYCGRG 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 142
Bbv12I GWGCWC 2 cut(s) 70, 267
BbvI GCAGC 3 cut(s) 117, 139, 153
BccI CCATC 1 cut(s) 280
BceAI ACGGC 1 cut(s) 263
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BciT130I CCWGG 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 193
BfrI CTTAAG 1 cut(s) 161
BisI GCNGC 3 cut(s) 106, 128, 167
BlsI GCNGC 3 cut(s) 107, 129, 168
Bme1390I CCNGG 1 cut(s) 26
BmeRI GACNNNNNGTC 1 cut(s) 12
BmeT110I CYCGRG 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 26
BpiI GAAGAC 1 cut(s) 142
BpmI CTGGAG 2 cut(s) 175, 181
Bpu10I CCTNAGC 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 128
Bse1I ACTGG 3 cut(s) 9, 63, 198
BseBI CCWGG 1 cut(s) 26
BseMII CTCAG 1 cut(s) 145
BseNI ACTGG 3 cut(s) 9, 63, 198
BseXI GCAGC 3 cut(s) 117, 139, 153
BseYI CCCAGC 1 cut(s) 29
Bsh1285I CGRYCG 2 cut(s) 103, 123
BshFI GGCC 1 cut(s) 62
BsiEI CGRYCG 2 cut(s) 103, 123
BsiHKAI GWGCWC 2 cut(s) 70, 267
BsiHKCI CYCGRG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 193
BsnI GGCC 1 cut(s) 62
BsoBI CYCGRG 1 cut(s) 56
Bsp1286I GDGCHC 2 cut(s) 70, 267
Bsp143I GATC 2 cut(s) 120, 180
BspACI CCGC 2 cut(s) 103, 233
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 35
BspTI CTTAAG 1 cut(s) 161
BsrI ACTGG 3 cut(s) 9, 63, 198
BssMI GATC 2 cut(s) 120, 180
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 116
BstAFI CTTAAG 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 131
BstKTI GATC 2 cut(s) 123, 183
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 2 cut(s) 120, 180
BstMCI CGRYCG 2 cut(s) 103, 123
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 24
BstV1I GCAGC 3 cut(s) 117, 139, 153
BstV2I GAAGAC 1 cut(s) 142
BstXI CCANNNNNNTGG 1 cut(s) 286
BsuRI GGCC 1 cut(s) 62
BtsIMutI CAGTG 2 cut(s) 70, 112
CviJI RGCY 9 cut(s) 29, 62, 89, 108, 130, 160, 166, 195, 250
CviKI_1 RGCY 9 cut(s) 29, 62, 89, 108, 130, 160, 166, 195, 250
DdeI CTNAG 1 cut(s) 131
DpnI GATC 2 cut(s) 122, 182
DpnII GATC 2 cut(s) 120, 180
DriI GACNNNNNGTC 1 cut(s) 12
Eam1105I GACNNNNNGTC 1 cut(s) 12
Eco88I CYCGRG 1 cut(s) 56
EcoRI GAATTC 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 24
FaiI YATR 1 cut(s) 270
Fnu4HI GCNGC 3 cut(s) 106, 128, 167
Fsp4HI GCNGC 3 cut(s) 106, 128, 167
GluI GCNGC 3 cut(s) 106, 128, 167
GsaI CCCAGC 1 cut(s) 33
GsuI CTGGAG 2 cut(s) 175, 181
HaeIII GGCC 1 cut(s) 62
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 2 cut(s) 221, 254
HphI GGTGA 1 cut(s) 14
Hpy166II GTNNAC 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 1 cut(s) 42
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 1 cut(s) 131
HpySE526I ACGT 1 cut(s) 42
Kzo9I GATC 2 cut(s) 120, 180
LmnI GCTCC 2 cut(s) 73, 200
LpnPI CCDG 9 cut(s) 11, 15, 22, 38, 76, 118, 205, 211, 236
Lsp1109I GCAGC 3 cut(s) 117, 139, 153
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 2 cut(s) 200, 243
MalI GATC 2 cut(s) 122, 182
MboI GATC 2 cut(s) 120, 180
MboII GAAGA 3 cut(s) 11, 74, 142
MhlI GDGCHC 2 cut(s) 70, 267
MluCI AATT 2 cut(s) 138, 239
MlyI GAGTC 2 cut(s) 215, 248
MnlI CCTC 2 cut(s) 52, 65
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 1 cut(s) 114
MspCI CTTAAG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 166
NdeII GATC 2 cut(s) 120, 180
NlaIV GGNNCC 1 cut(s) 35
NmuCI GTSAC 1 cut(s) 243
OliI CACNNNNGTG 1 cut(s) 114
PaeR7I CTCGAG 1 cut(s) 56
PkrI GCNGC 3 cut(s) 107, 129, 168
Ple19I CGATCG 1 cut(s) 123
PleI GAGTC 2 cut(s) 215, 248
PpsI GAGTC 2 cut(s) 215, 248
Psp6I CCWGG 1 cut(s) 24
PspFI CCCAGC 1 cut(s) 29
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 35
PspXI VCTCGAGB 1 cut(s) 56
PvuI CGATCG 1 cut(s) 123
RseI CAYNNNNRTG 1 cut(s) 114
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 3 cut(s) 106, 128, 167
Sau3AI GATC 2 cut(s) 120, 180
SchI GAGTC 2 cut(s) 215, 248
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 2 cut(s) 70, 267
SetI ASST 6 cut(s) 45, 91, 132, 150, 168, 197
Sfr274I CTCGAG 1 cut(s) 56
SlaI CTCGAG 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 114
SmlI CTYRAG 3 cut(s) 56, 143, 161
SmoI CTYRAG 3 cut(s) 56, 143, 161
Sse9I AATT 2 cut(s) 138, 239
SsiI CCGC 2 cut(s) 103, 233
StyD4I CCNGG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 1 cut(s) 45
TaqI TCGA 6 cut(s) 57, 75, 85, 99, 123, 183
TasI AATT 2 cut(s) 138, 239
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 2 cut(s) 70, 119
TseFI GTSAC 1 cut(s) 243
TseI GCWGC 3 cut(s) 105, 127, 166
Tsp45I GTSAC 1 cut(s) 243
TspRI CASTG 2 cut(s) 70, 119
Vha464I CTTAAG 1 cut(s) 161
XapI RAATTY 1 cut(s) 138
XhoI CTCGAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.