Rh3DG315400

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0019397
Physical Location & Seq
Reverse (-)
33905923 .. 33906424
502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG315400.1

Sequence Viewer

Length: 285 bp
ATGGAGACCAGTCGTCATCTTCACCAGGCTGGGTTCCACTACGTCAACTCACGCCTCGAGGCCAGTGCTCCAGTCGACTATCTTCGAGCTTATTTTTTCGACCGCAGCCACCACTGTGCGATCGAGCAGCTCAGGAGAATTCTCAAGGTCTTCACTTGGCTTAAGTCTCCAACTCCAATTACTCCAAGACCAACAACGACTCAACCAAAGCGGTCAAATAGTCACGGCTGGACTCTTGTGTGCTCTATGTGGTTTCCAAAAAGATGGGATAAGACCAATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4

Protein Analysis

94

Amino Acids

11.2

Weight (kDa)

10.29

Isoelectric Point (pI)

69.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019397)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0447451
rosa_samantha Rh3BG319100 Rh3CG315900 Rh3CG317200 Rh3DG315400 Rh6CG229400 Rh6DG343100 Rh6DG430600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 56
AccI GTMKAC 1 cut(s) 75
AciI CCGC 2 cut(s) 103, 211
AcsI RAATTY 1 cut(s) 138
AflII CTTAAG 1 cut(s) 161
AhdI GACNNNNNGTC 1 cut(s) 12
AjnI CCWGG 1 cut(s) 24
AleI CACNNNNGTG 1 cut(s) 114
AluBI AGCT 2 cut(s) 89, 130
AluI AGCT 2 cut(s) 89, 130
Alw21I GWGCWC 2 cut(s) 70, 245
Alw26I GTCTC 1 cut(s) 171
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 105, 127
ApoI RAATTY 1 cut(s) 138
AsuHPI GGTGA 1 cut(s) 14
AvaI CYCGRG 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 142
Bbv12I GWGCWC 2 cut(s) 70, 245
BbvI GCAGC 2 cut(s) 117, 139
BccI CCATC 1 cut(s) 258
BceAI ACGGC 1 cut(s) 241
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BciT130I CCWGG 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 171
BfrI CTTAAG 1 cut(s) 161
BisI GCNGC 2 cut(s) 106, 128
BlsI GCNGC 2 cut(s) 107, 129
Bme1390I CCNGG 1 cut(s) 26
BmeRI GACNNNNNGTC 1 cut(s) 12
BmeT110I CYCGRG 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 26
BpiI GAAGAC 1 cut(s) 142
BpmI CTGGAG 1 cut(s) 54
Bpu10I CCTNAGC 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 128
Bse1I ACTGG 3 cut(s) 9, 63, 71
BseBI CCWGG 1 cut(s) 26
BseMII CTCAG 1 cut(s) 145
BseNI ACTGG 3 cut(s) 9, 63, 71
BseXI GCAGC 2 cut(s) 117, 139
BseYI CCCAGC 1 cut(s) 29
Bsh1285I CGRYCG 2 cut(s) 103, 123
BshFI GGCC 1 cut(s) 62
BsiEI CGRYCG 2 cut(s) 103, 123
BsiHKAI GWGCWC 2 cut(s) 70, 245
BsiHKCI CYCGRG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 171
BsnI GGCC 1 cut(s) 62
BsoBI CYCGRG 1 cut(s) 56
Bsp1286I GDGCHC 2 cut(s) 70, 245
Bsp143I GATC 1 cut(s) 120
BspACI CCGC 2 cut(s) 103, 211
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 35
BspTI CTTAAG 1 cut(s) 161
BsrI ACTGG 3 cut(s) 9, 63, 71
BssMI GATC 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 116
BstAFI CTTAAG 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 131
BstKTI GATC 1 cut(s) 123
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 1 cut(s) 120
BstMCI CGRYCG 2 cut(s) 103, 123
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 117, 139
BstV2I GAAGAC 1 cut(s) 142
BstXI CCANNNNNNTGG 1 cut(s) 264
BsuRI GGCC 1 cut(s) 62
BtsIMutI CAGTG 2 cut(s) 70, 112
CviJI RGCY 7 cut(s) 29, 62, 89, 108, 130, 160, 228
CviKI_1 RGCY 7 cut(s) 29, 62, 89, 108, 130, 160, 228
DdeI CTNAG 1 cut(s) 131
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
DriI GACNNNNNGTC 1 cut(s) 12
Eam1105I GACNNNNNGTC 1 cut(s) 12
Eco88I CYCGRG 1 cut(s) 56
EcoRI GAATTC 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 24
FaiI YATR 1 cut(s) 248
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 2 cut(s) 106, 128
Fsp4HI GCNGC 2 cut(s) 106, 128
GluI GCNGC 2 cut(s) 106, 128
GsaI CCCAGC 1 cut(s) 33
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 1 cut(s) 62
HincII GTYRAC 2 cut(s) 46, 76
HindII GTYRAC 2 cut(s) 46, 76
HinfI GANTC 2 cut(s) 199, 232
HphI GGTGA 1 cut(s) 14
Hpy166II GTNNAC 2 cut(s) 46, 76
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 2 cut(s) 46, 76
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 1 cut(s) 42
HpyF3I CTNAG 1 cut(s) 131
HpySE526I ACGT 1 cut(s) 42
Kzo9I GATC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 8 cut(s) 11, 15, 22, 38, 76, 84, 118, 214
Lsp1109I GCAGC 2 cut(s) 117, 139
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 221
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 3 cut(s) 11, 74, 142
MhlI GDGCHC 2 cut(s) 70, 245
MluCI AATT 2 cut(s) 138, 177
MlyI GAGTC 2 cut(s) 193, 226
MmeI TCCRAC 1 cut(s) 194
MnlI CCTC 2 cut(s) 52, 65
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 1 cut(s) 114
MspCI CTTAAG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 26
NdeII GATC 1 cut(s) 120
NlaIV GGNNCC 1 cut(s) 35
NmuCI GTSAC 1 cut(s) 221
OliI CACNNNNGTG 1 cut(s) 114
PaeR7I CTCGAG 1 cut(s) 56
PkrI GCNGC 2 cut(s) 107, 129
Ple19I CGATCG 1 cut(s) 123
PleI GAGTC 2 cut(s) 193, 226
PpsI GAGTC 2 cut(s) 193, 226
Psp6I CCWGG 1 cut(s) 24
PspFI CCCAGC 1 cut(s) 29
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 35
PspXI VCTCGAGB 1 cut(s) 56
PvuI CGATCG 1 cut(s) 123
RseI CAYNNNNRTG 1 cut(s) 114
SalI GTCGAC 1 cut(s) 74
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 2 cut(s) 106, 128
Sau3AI GATC 1 cut(s) 120
SchI GAGTC 2 cut(s) 193, 226
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 2 cut(s) 70, 245
SetI ASST 4 cut(s) 45, 91, 132, 150
Sfr274I CTCGAG 1 cut(s) 56
SlaI CTCGAG 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 114
SmlI CTYRAG 3 cut(s) 56, 143, 161
SmoI CTYRAG 3 cut(s) 56, 143, 161
Sse9I AATT 2 cut(s) 138, 177
SsiI CCGC 2 cut(s) 103, 211
StyD4I CCNGG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 1 cut(s) 45
TaqI TCGA 5 cut(s) 57, 75, 85, 99, 123
TasI AATT 2 cut(s) 138, 177
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 2 cut(s) 70, 119
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 2 cut(s) 105, 127
Tsp45I GTSAC 1 cut(s) 221
TspRI CASTG 2 cut(s) 70, 119
Vha464I CTTAAG 1 cut(s) 161
XapI RAATTY 1 cut(s) 138
XhoI CTCGAG 1 cut(s) 56
XmiI GTMKAC 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.