Rh3CG315900

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0019397
Physical Location & Seq
Reverse (-)
33632837 .. 33633348
512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG315900.1

Sequence Viewer

Length: 300 bp
ATGGAGACCGGTCGTCATCTTCACCAGGCTGGGTTCCACTACGTCAACTCACGCCTCGAGGCATTGCACGAGCTCGAGAGCCTCCTTGCTGGTGCTCCAGTTGACTATCTTCGAGCTTATGTTTCCGACTGCGGCCACCACCGTGTGCTCGAGCAGCTCAGGAGAATTCTTAGGTTGCTTGTATTGTTGATCGGAGTCTCCAGCTCCAGTTACTCCAAGTCCAACGACTCAACTAAAGCGGTCAAATCGTCGCGACTGGACTCTTGTGTGCTCTATGTGGTTTCCAAAAAGATGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4

Protein Analysis

99

Amino Acids

11.07

Weight (kDa)

9.3

Isoelectric Point (pI)

55.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019397)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0447451
rosa_samantha Rh3BG319100 Rh3CG315900 Rh3CG317200 Rh3DG315400 Rh6CG229400 Rh6DG343100 Rh6DG430600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 56
AccII CGCG 1 cut(s) 253
AciI CCGC 2 cut(s) 132, 239
AcoI YGGCCR 1 cut(s) 133
AcsI RAATTY 1 cut(s) 165
AdeI CACNNNGTG 1 cut(s) 145
AgeI ACCGGT 1 cut(s) 8
AhdI GACNNNNNGTC 1 cut(s) 12
AjnI CCWGG 1 cut(s) 24
AleI CACNNNNGTG 1 cut(s) 141
AluBI AGCT 4 cut(s) 73, 116, 157, 204
AluI AGCT 4 cut(s) 73, 116, 157, 204
Alw21I GWGCWC 4 cut(s) 75, 97, 150, 273
Alw26I GTCTC 1 cut(s) 202
Ama87I CYCGRG 3 cut(s) 56, 74, 149
AoxI GGCC 1 cut(s) 133
ApeKI GCWGC 1 cut(s) 154
ApoI RAATTY 1 cut(s) 165
AsiGI ACCGGT 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 14
AvaI CYCGRG 3 cut(s) 56, 74, 149
BanII GRGCYC 1 cut(s) 75
BauI CACGAG 1 cut(s) 68
Bbv12I GWGCWC 4 cut(s) 75, 97, 150, 273
BbvI GCAGC 1 cut(s) 166
BccI CCATC 1 cut(s) 286
BciT130I CCWGG 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 202
BisI GCNGC 2 cut(s) 133, 155
BlsI GCNGC 2 cut(s) 134, 156
Bme1390I CCNGG 1 cut(s) 26
BmeRI GACNNNNNGTC 1 cut(s) 12
BmeT110I CYCGRG 3 cut(s) 56, 74, 149
BmiI GGNNCC 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 26
BpmI CTGGAG 3 cut(s) 81, 184, 190
Bpu10I CCTNAGC 1 cut(s) 158
BsaWI WCCGGW 1 cut(s) 8
Bse118I RCCGGY 1 cut(s) 8
Bse1I ACTGG 3 cut(s) 98, 207, 261
Bse3DI GCAATG 1 cut(s) 62
BseBI CCWGG 1 cut(s) 26
BseMI GCAATG 1 cut(s) 62
BseMII CTCAG 1 cut(s) 172
BseNI ACTGG 3 cut(s) 98, 207, 261
BseXI GCAGC 1 cut(s) 166
BseYI CCCAGC 1 cut(s) 29
Bsh1236I CGCG 1 cut(s) 253
Bsh1285I CGRYCG 1 cut(s) 13
BshFI GGCC 1 cut(s) 135
BshTI ACCGGT 1 cut(s) 8
BsiEI CGRYCG 1 cut(s) 13
BsiHKAI GWGCWC 4 cut(s) 75, 97, 150, 273
BsiHKCI CYCGRG 3 cut(s) 56, 74, 149
BsiSI CCGG 1 cut(s) 9
BsmAI GTCTC 1 cut(s) 202
BsnI GGCC 1 cut(s) 135
BsoBI CYCGRG 3 cut(s) 56, 74, 149
Bsp1286I GDGCHC 4 cut(s) 75, 97, 150, 273
Bsp143I GATC 1 cut(s) 189
Bsp68I TCGCGA 1 cut(s) 253
BspACI CCGC 2 cut(s) 132, 239
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 171
BspFNI CGCG 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 35
BsrDI GCAATG 1 cut(s) 62
BsrFI RCCGGY 1 cut(s) 8
BsrI ACTGG 3 cut(s) 98, 207, 261
BssAI RCCGGY 1 cut(s) 8
BssMI GATC 1 cut(s) 189
BssSI CACGAG 1 cut(s) 68
Bst2BI CACGAG 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 143
BstDEI CTNAG 2 cut(s) 158, 170
BstFNI CGCG 1 cut(s) 253
BstKTI GATC 1 cut(s) 192
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 1 cut(s) 189
BstMCI CGRYCG 1 cut(s) 13
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 24
BstUI CGCG 1 cut(s) 253
BstV1I GCAGC 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 292
BsuRI GGCC 1 cut(s) 135
BtuMI TCGCGA 1 cut(s) 253
Cfr10I RCCGGY 1 cut(s) 8
CspAI ACCGGT 1 cut(s) 8
CviJI RGCY 7 cut(s) 29, 73, 81, 116, 135, 157, 204
CviKI_1 RGCY 7 cut(s) 29, 73, 81, 116, 135, 157, 204
DdeI CTNAG 2 cut(s) 158, 170
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
DraIII CACNNNGTG 1 cut(s) 145
DriI GACNNNNNGTC 1 cut(s) 12
EaeI YGGCCR 1 cut(s) 133
Eam1105I GACNNNNNGTC 1 cut(s) 12
Ecl136II GAGCTC 1 cut(s) 73
Eco24I GRGCYC 1 cut(s) 75
Eco53kI GAGCTC 1 cut(s) 73
Eco88I CYCGRG 3 cut(s) 56, 74, 149
EcoICRI GAGCTC 1 cut(s) 73
EcoRI GAATTC 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 24
EcoT38I GRGCYC 1 cut(s) 75
FaiI YATR 2 cut(s) 120, 276
Fnu4HI GCNGC 2 cut(s) 133, 155
FriOI GRGCYC 1 cut(s) 75
Fsp4HI GCNGC 2 cut(s) 133, 155
GluI GCNGC 2 cut(s) 133, 155
GsaI CCCAGC 1 cut(s) 33
GsuI CTGGAG 3 cut(s) 81, 184, 190
HaeIII GGCC 1 cut(s) 135
HapII CCGG 1 cut(s) 9
HincII GTYRAC 2 cut(s) 46, 103
HindII GTYRAC 2 cut(s) 46, 103
HinfI GANTC 3 cut(s) 195, 227, 260
HpaII CCGG 1 cut(s) 9
HphI GGTGA 1 cut(s) 14
Hpy166II GTNNAC 2 cut(s) 46, 103
Hpy188I TCNGA 2 cut(s) 127, 194
Hpy188III TCNNGA 3 cut(s) 76, 160, 252
Hpy8I GTNNAC 2 cut(s) 46, 103
Hpy99I CGWCG 1 cut(s) 253
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpyF3I CTNAG 2 cut(s) 158, 170
HpySE526I ACGT 1 cut(s) 42
Kzo9I GATC 1 cut(s) 189
LmnI GCTCC 2 cut(s) 100, 209
Lsp1109I GCAGC 1 cut(s) 166
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 209
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 2 cut(s) 11, 101
MhlI GDGCHC 4 cut(s) 75, 97, 150, 273
MluCI AATT 1 cut(s) 165
MlyI GAGTC 3 cut(s) 204, 221, 254
MmeI TCCRAC 2 cut(s) 150, 246
MnlI CCTC 3 cut(s) 52, 65, 92
MslI CAYNNNNRTG 1 cut(s) 141
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 26
MvnI CGCG 1 cut(s) 253
MwoI GCNNNNNNNGC 1 cut(s) 154
NdeII GATC 1 cut(s) 189
NlaIV GGNNCC 1 cut(s) 35
NruI TCGCGA 1 cut(s) 253
OliI CACNNNNGTG 1 cut(s) 141
PaeR7I CTCGAG 3 cut(s) 56, 74, 149
PinAI ACCGGT 1 cut(s) 8
PkrI GCNGC 2 cut(s) 134, 156
PleI GAGTC 3 cut(s) 203, 221, 254
PpsI GAGTC 3 cut(s) 203, 221, 254
Psp124BI GAGCTC 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 24
PspFI CCCAGC 1 cut(s) 29
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 35
PspXI VCTCGAGB 2 cut(s) 56, 149
RruI TCGCGA 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 141
SacI GAGCTC 1 cut(s) 75
SatI GCNGC 2 cut(s) 133, 155
Sau3AI GATC 1 cut(s) 189
SchI GAGTC 3 cut(s) 204, 221, 254
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 4 cut(s) 75, 97, 150, 273
SetI ASST 6 cut(s) 45, 75, 118, 159, 176, 206
Sfr274I CTCGAG 3 cut(s) 56, 74, 149
SlaI CTCGAG 3 cut(s) 56, 74, 149
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 3 cut(s) 56, 74, 149
SmoI CTYRAG 3 cut(s) 56, 74, 149
Sse9I AATT 1 cut(s) 165
SsiI CCGC 2 cut(s) 132, 239
SstI GAGCTC 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 143
TaiI ACGT 1 cut(s) 45
TaqI TCGA 4 cut(s) 57, 75, 112, 150
TasI AATT 1 cut(s) 165
TauI GCSGC 1 cut(s) 135
TseI GCWGC 1 cut(s) 154
XapI RAATTY 1 cut(s) 165
XhoI CTCGAG 3 cut(s) 56, 74, 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.