Rh6CG229400

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0019397
Physical Location & Seq
Reverse (-)
38488304 .. 38488831
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG229400.1

Sequence Viewer

Length: 300 bp
ATGGCCACCGGTCTTCATCTTCACCCGGCCGGGTTCCACTACGTCAACTCGCGCCTCGAGTCCTTGCACGAGCTTGATAGCCTCCTCGCCGGCGCTCCGATCGACTCTCTCTCTCTCTCTCATTTGGTTATAGTTTATTCGAAATTTGTGCTTCTTTGTGCAGTACTGCAGTTACGAGAGAGGAGGGGTAGAATTTGGATGCAGGCTAGTTTTAGAAGCAACCCTGCAACCAATGACTGGATTCCCAAGACGGATGAAGATCAATCTGGTCTTCGTTTCCTCAAAGCTAGCCAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4

Protein Analysis

99

Amino Acids

11.16

Weight (kDa)

8.0

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019397)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0447451
rosa_samantha Rh3BG319100 Rh3CG315900 Rh3CG317200 Rh3DG315400 Rh6CG229400 Rh6DG343100 Rh6DG430600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 237
AccII CGCG 1 cut(s) 52
AcoI YGGCCR 2 cut(s) 3, 27
AcsI RAATTY 2 cut(s) 143, 192
AfaI GTAC 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 237
AgeI ACCGGT 1 cut(s) 8
AluBI AGCT 2 cut(s) 73, 287
AluI AGCT 2 cut(s) 73, 287
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 2 cut(s) 3, 27
ApoI RAATTY 2 cut(s) 143, 192
AsiGI ACCGGT 1 cut(s) 8
AspLEI GCGC 2 cut(s) 54, 95
AsuC2I CCSGG 2 cut(s) 26, 31
AsuHPI GGTGA 1 cut(s) 14
AsuII TTCGAA 1 cut(s) 140
AsuNHI GCTAGC 1 cut(s) 287
AvaI CYCGRG 1 cut(s) 56
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 68
BbsI GAAGAC 2 cut(s) 5, 263
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BcnI CCSGG 2 cut(s) 26, 31
BfaI CTAG 2 cut(s) 207, 288
BfmI CTRYAG 1 cut(s) 167
BfoI RGCGCY 1 cut(s) 96
BmcAI AGTACT 1 cut(s) 165
Bme1390I CCNGG 2 cut(s) 26, 31
BmeT110I CYCGRG 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 35
BmrFI CCNGG 2 cut(s) 26, 31
BmsI GCATC 1 cut(s) 189
BmtI GCTAGC 1 cut(s) 291
BpiI GAAGAC 2 cut(s) 5, 263
Bpu14I TTCGAA 1 cut(s) 140
BpuMI CCSGG 2 cut(s) 26, 31
BsaBI GATNNNNATC 1 cut(s) 258
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 1 cut(s) 237
Bse118I RCCGGY 2 cut(s) 8, 89
Bse1I ACTGG 1 cut(s) 242
Bse8I GATNNNNATC 1 cut(s) 258
BseGI GGATG 2 cut(s) 204, 259
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 242
BseRI GAGGAG 2 cut(s) 74, 196
BseX3I CGGCCG 1 cut(s) 27
BsgI GTGCAG 1 cut(s) 180
Bsh1236I CGCG 1 cut(s) 52
Bsh1285I CGRYCG 2 cut(s) 30, 102
BshFI GGCC 2 cut(s) 5, 29
BshTI ACCGGT 1 cut(s) 8
BsiEI CGRYCG 2 cut(s) 30, 102
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 4 cut(s) 9, 26, 30, 90
BslI CCNNNNNNNGG 1 cut(s) 237
BsnI GGCC 2 cut(s) 5, 29
BsoBI CYCGRG 1 cut(s) 56
Bsp119I TTCGAA 1 cut(s) 140
Bsp143I GATC 2 cut(s) 99, 259
BspANI GGCC 2 cut(s) 5, 29
BspFNI CGCG 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 35
BspMAI CTGCAG 1 cut(s) 171
BspOI GCTAGC 1 cut(s) 291
BspT104I TTCGAA 1 cut(s) 140
BsrFI RCCGGY 2 cut(s) 8, 89
BsrI ACTGG 1 cut(s) 242
BssAI RCCGGY 2 cut(s) 8, 89
BssMI GATC 2 cut(s) 99, 259
BssSI CACGAG 1 cut(s) 68
Bst2BI CACGAG 1 cut(s) 68
BstBI TTCGAA 1 cut(s) 140
BstC8I GCNNGC 3 cut(s) 91, 204, 289
BstF5I GGATG 2 cut(s) 204, 259
BstFNI CGCG 1 cut(s) 52
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 2 cut(s) 54, 95
BstKTI GATC 2 cut(s) 102, 262
BstMBI GATC 2 cut(s) 99, 259
BstMCI CGRYCG 2 cut(s) 30, 102
BstSCI CCNGG 2 cut(s) 24, 29
BstSFI CTRYAG 1 cut(s) 167
BstUI CGCG 1 cut(s) 52
BstV2I GAAGAC 2 cut(s) 5, 263
BstZI CGGCCG 1 cut(s) 27
BsuRI GGCC 2 cut(s) 5, 29
BtsCI GGATG 2 cut(s) 204, 259
Cac8I GCNNGC 3 cut(s) 91, 204, 289
CfoI GCGC 2 cut(s) 54, 95
Cfr10I RCCGGY 2 cut(s) 8, 89
Csp6I GTAC 1 cut(s) 164
CspAI ACCGGT 1 cut(s) 8
CviJI RGCY 7 cut(s) 5, 29, 73, 81, 206, 287, 291
CviKI_1 RGCY 7 cut(s) 5, 29, 73, 81, 206, 287, 291
CviQI GTAC 1 cut(s) 164
DpnI GATC 2 cut(s) 101, 261
DpnII GATC 2 cut(s) 99, 259
EaeI YGGCCR 2 cut(s) 3, 27
EagI CGGCCG 1 cut(s) 27
EclXI CGGCCG 1 cut(s) 27
Eco52I CGGCCG 1 cut(s) 27
Eco88I CYCGRG 1 cut(s) 56
FaiI YATR 2 cut(s) 131, 298
FokI GGATG 2 cut(s) 211, 266
FspBI CTAG 2 cut(s) 207, 288
GlaI GCGC 2 cut(s) 53, 94
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 2 cut(s) 5, 29
HapII CCGG 4 cut(s) 9, 26, 30, 90
HhaI GCGC 2 cut(s) 54, 95
Hin6I GCGC 2 cut(s) 52, 93
HinP1I GCGC 2 cut(s) 52, 93
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 3 cut(s) 59, 104, 241
HpaII CCGG 4 cut(s) 9, 26, 30, 90
HphI GGTGA 1 cut(s) 14
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 99
Hpy8I GTNNAC 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 5 cut(s) 67, 161, 169, 202, 227
HpySE526I ACGT 1 cut(s) 42
HspAI GCGC 2 cut(s) 52, 93
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
Kzo9I GATC 2 cut(s) 99, 259
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 8 cut(s) 22, 39, 43, 103, 188, 223, 237, 252
LweI GCATC 1 cut(s) 189
MaeI CTAG 2 cut(s) 207, 288
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 171
MalI GATC 2 cut(s) 101, 261
MboI GATC 2 cut(s) 99, 259
MboII GAAGA 4 cut(s) 5, 11, 263, 269
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 143, 192
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 68, 98
MnlI CCTC 6 cut(s) 65, 92, 95, 174, 177, 290
Mox20I TGGCCA 1 cut(s) 5
MreI CGCCGGCG 1 cut(s) 89
MroNI GCCGGC 1 cut(s) 89
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 4 cut(s) 9, 26, 30, 90
MspR9I CCNGG 2 cut(s) 26, 31
MvnI CGCG 1 cut(s) 52
NaeI GCCGGC 1 cut(s) 91
NciI CCSGG 2 cut(s) 26, 31
NdeII GATC 2 cut(s) 99, 259
NgoMIV GCCGGC 1 cut(s) 89
NheI GCTAGC 1 cut(s) 287
NlaIV GGNNCC 1 cut(s) 35
NspV TTCGAA 1 cut(s) 140
PaeR7I CTCGAG 1 cut(s) 56
PdiI GCCGGC 1 cut(s) 91
PfeI GAWTC 1 cut(s) 241
PflMI CCANNNNNTGG 1 cut(s) 237
PinAI ACCGGT 1 cut(s) 8
Ple19I CGATCG 1 cut(s) 102
PleI GAGTC 2 cut(s) 67, 98
PpsI GAGTC 2 cut(s) 67, 98
PspN4I GGNNCC 1 cut(s) 35
PspXI VCTCGAGB 1 cut(s) 56
PstI CTGCAG 1 cut(s) 171
PvuI CGATCG 1 cut(s) 102
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
Sau3AI GATC 2 cut(s) 99, 259
ScaI AGTACT 1 cut(s) 165
SchI GAGTC 2 cut(s) 68, 98
ScrFI CCNGG 2 cut(s) 26, 31
SetI ASST 3 cut(s) 45, 75, 289
SfaNI GCATC 1 cut(s) 189
SfcI CTRYAG 1 cut(s) 167
Sfr274I CTCGAG 1 cut(s) 56
SfuI TTCGAA 1 cut(s) 140
SgrAI CRCCGGYG 1 cut(s) 89
SlaI CTCGAG 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 2 cut(s) 143, 192
SspMI CTAG 2 cut(s) 207, 288
StyD4I CCNGG 2 cut(s) 24, 29
TaiI ACGT 1 cut(s) 45
TaqI TCGA 3 cut(s) 57, 102, 140
TasI AATT 2 cut(s) 143, 192
TatI WGTACW 1 cut(s) 163
TfiI GAWTC 1 cut(s) 241
TspDTI ATGAA 2 cut(s) 5, 270
TspGWI ACGGA 1 cut(s) 266
Van91I CCANNNNNTGG 1 cut(s) 237
XapI RAATTY 2 cut(s) 143, 192
XhoI CTCGAG 1 cut(s) 56
XspI CTAG 2 cut(s) 207, 288
ZrmI AGTACT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.