Rh6DG343100

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0019397
Physical Location & Seq
Forward (+)
54587350 .. 54587724
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG343100.1

Sequence Viewer

Length: 375 bp
ATGGCCACCGGTCGTCGTCTTCACCCAGCCGGGTTCCACTACGTCAACTCGCGCCTCGAGTCCTTGCACGAGCTCGATAGCCTCCTCGCCGGCGCTCCGATCGACTCTCTCTCTCTCTCATTTGGTTATAGTTTATTTGAAATTTTTGCTTCTTTGTGCAGTACTGCAGTTACGAGGGAGGAGGTGAAGGGAAATTTCATTTTGTTATTACCAGGTTTGAGATCTGGTATAGTGGTGCTTCAAATTCGAAAATATGCTTTGATAGTTCTTGATTTTTCAGGGGTAGAATTTGGATGCAGGCTGGTTTCAGAAGCAACCCTGCAACCAATGACTGGATTCCCAAGACAGATGAAGATCAATCTGGTATGGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4

Protein Analysis

124

Amino Acids

13.71

Weight (kDa)

7.84

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019397)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0447451
rosa_samantha Rh3BG319100 Rh3CG315900 Rh3CG317200 Rh3DG315400 Rh6CG229400 Rh6DG343100 Rh6DG430600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 332
AccII CGCG 1 cut(s) 52
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 141, 193, 243, 287
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 332
AgeI ACCGGT 1 cut(s) 8
AgsI TTSAA 2 cut(s) 140, 242
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
Alw21I GWGCWC 1 cut(s) 75
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 4 cut(s) 141, 193, 243, 287
AsiGI ACCGGT 1 cut(s) 8
AspLEI GCGC 2 cut(s) 54, 95
AsuC2I CCSGG 1 cut(s) 31
AsuHPI GGTGA 2 cut(s) 14, 196
AsuII TTCGAA 1 cut(s) 247
AvaI CYCGRG 1 cut(s) 56
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 75
BauI CACGAG 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 213
BcnI CCSGG 1 cut(s) 31
BfmI CTRYAG 1 cut(s) 165
BfoI RGCGCY 1 cut(s) 96
BglII AGATCT 1 cut(s) 221
BmcAI AGTACT 1 cut(s) 163
Bme1390I CCNGG 2 cut(s) 31, 213
BmeT110I CYCGRG 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 35
BmrFI CCNGG 2 cut(s) 31, 213
BmsI GCATC 1 cut(s) 284
BpiI GAAGAC 1 cut(s) 11
Bpu14I TTCGAA 1 cut(s) 247
BpuMI CCSGG 1 cut(s) 31
BsaBI GATNNNNATC 1 cut(s) 353
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 1 cut(s) 332
Bse118I RCCGGY 2 cut(s) 8, 89
Bse1I ACTGG 1 cut(s) 337
Bse8I GATNNNNATC 1 cut(s) 353
BseBI CCWGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 299
BseJI GATNNNNATC 1 cut(s) 353
BseLI CCNNNNNNNGG 1 cut(s) 332
BseNI ACTGG 1 cut(s) 337
BseRI GAGGAG 2 cut(s) 74, 194
BseYI CCCAGC 1 cut(s) 25
BsgI GTGCAG 1 cut(s) 178
Bsh1236I CGCG 1 cut(s) 52
Bsh1285I CGRYCG 2 cut(s) 13, 102
BshFI GGCC 1 cut(s) 5
BshTI ACCGGT 1 cut(s) 8
BsiEI CGRYCG 2 cut(s) 13, 102
BsiHKAI GWGCWC 1 cut(s) 75
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 3 cut(s) 9, 30, 90
BslI CCNNNNNNNGG 1 cut(s) 332
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 56
Bsp119I TTCGAA 1 cut(s) 247
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 3 cut(s) 99, 221, 354
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 35
BspMAI CTGCAG 1 cut(s) 169
BspT104I TTCGAA 1 cut(s) 247
BsrFI RCCGGY 2 cut(s) 8, 89
BsrI ACTGG 1 cut(s) 337
BssAI RCCGGY 2 cut(s) 8, 89
BssMI GATC 3 cut(s) 99, 221, 354
BssSI CACGAG 1 cut(s) 68
Bst2BI CACGAG 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 213
BstBI TTCGAA 1 cut(s) 247
BstC8I GCNNGC 2 cut(s) 91, 299
BstF5I GGATG 1 cut(s) 299
BstFNI CGCG 1 cut(s) 52
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 2 cut(s) 54, 95
BstKTI GATC 3 cut(s) 102, 224, 357
BstMBI GATC 3 cut(s) 99, 221, 354
BstMCI CGRYCG 2 cut(s) 13, 102
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 2 cut(s) 29, 211
BstSFI CTRYAG 1 cut(s) 165
BstUI CGCG 1 cut(s) 52
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 299
Cac8I GCNNGC 2 cut(s) 91, 299
CfoI GCGC 2 cut(s) 54, 95
Cfr10I RCCGGY 2 cut(s) 8, 89
CsiI ACCWGGT 1 cut(s) 211
Csp6I GTAC 1 cut(s) 162
CspAI ACCGGT 1 cut(s) 8
CviJI RGCY 5 cut(s) 5, 29, 73, 81, 301
CviKI_1 RGCY 5 cut(s) 5, 29, 73, 81, 301
CviQI GTAC 1 cut(s) 162
DpnI GATC 3 cut(s) 101, 223, 356
DpnII GATC 3 cut(s) 99, 221, 354
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 73
Eco24I GRGCYC 1 cut(s) 75
Eco53kI GAGCTC 1 cut(s) 73
Eco88I CYCGRG 1 cut(s) 56
EcoICRI GAGCTC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 75
FaiI YATR 4 cut(s) 129, 230, 255, 367
FokI GGATG 1 cut(s) 306
FriOI GRGCYC 1 cut(s) 75
GlaI GCGC 2 cut(s) 53, 94
GsaI CCCAGC 1 cut(s) 29
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 9, 30, 90
HhaI GCGC 2 cut(s) 54, 95
Hin6I GCGC 2 cut(s) 52, 93
HinP1I GCGC 2 cut(s) 52, 93
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 3 cut(s) 59, 104, 336
HpaII CCGG 3 cut(s) 9, 30, 90
HphI GGTGA 2 cut(s) 14, 196
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 2 cut(s) 99, 310
Hpy188III TCNNGA 1 cut(s) 269
Hpy8I GTNNAC 1 cut(s) 46
Hpy99I CGWCG 1 cut(s) 18
HpyAV CCTTC 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 5 cut(s) 67, 159, 167, 297, 322
HpySE526I ACGT 1 cut(s) 42
HspAI GCGC 2 cut(s) 52, 93
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
Kzo9I GATC 3 cut(s) 99, 221, 354
LmnI GCTCC 1 cut(s) 100
LweI GCATC 1 cut(s) 284
MabI ACCWGGT 1 cut(s) 211
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 169
MalI GATC 3 cut(s) 101, 223, 356
MboI GATC 3 cut(s) 99, 221, 354
MboII GAAGA 2 cut(s) 11, 364
MflI RGATCY 1 cut(s) 221
MhlI GDGCHC 1 cut(s) 75
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 141, 193, 243, 287
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 68, 98
MnlI CCTC 6 cut(s) 65, 92, 95, 168, 172, 175
Mox20I TGGCCA 1 cut(s) 5
MreI CGCCGGCG 1 cut(s) 89
MroNI GCCGGC 1 cut(s) 89
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 9, 30, 90
MspR9I CCNGG 2 cut(s) 31, 213
MvaI CCWGG 1 cut(s) 213
MvnI CGCG 1 cut(s) 52
NaeI GCCGGC 1 cut(s) 91
NciI CCSGG 1 cut(s) 31
NdeII GATC 3 cut(s) 99, 221, 354
NgoMIV GCCGGC 1 cut(s) 89
NlaIV GGNNCC 1 cut(s) 35
NspV TTCGAA 1 cut(s) 247
PaeR7I CTCGAG 1 cut(s) 56
PdiI GCCGGC 1 cut(s) 91
PfeI GAWTC 1 cut(s) 336
PflMI CCANNNNNTGG 1 cut(s) 332
PinAI ACCGGT 1 cut(s) 8
Ple19I CGATCG 1 cut(s) 102
PleI GAGTC 2 cut(s) 67, 98
PpsI GAGTC 2 cut(s) 67, 98
Psp124BI GAGCTC 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 211
PspFI CCCAGC 1 cut(s) 25
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 35
PspXI VCTCGAGB 1 cut(s) 56
PstI CTGCAG 1 cut(s) 169
PsuI RGATCY 1 cut(s) 221
PvuI CGATCG 1 cut(s) 102
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SacI GAGCTC 1 cut(s) 75
Sau3AI GATC 3 cut(s) 99, 221, 354
ScaI AGTACT 1 cut(s) 163
SchI GAGTC 2 cut(s) 68, 98
ScrFI CCNGG 2 cut(s) 31, 213
SduI GDGCHC 1 cut(s) 75
SetI ASST 4 cut(s) 45, 75, 186, 217
SexAI ACCWGGT 1 cut(s) 211
SfaNI GCATC 1 cut(s) 284
SfcI CTRYAG 1 cut(s) 165
Sfr274I CTCGAG 1 cut(s) 56
SfuI TTCGAA 1 cut(s) 247
SgrAI CRCCGGYG 1 cut(s) 89
SlaI CTCGAG 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 4 cut(s) 141, 193, 243, 287
SstI GAGCTC 1 cut(s) 75
StyD4I CCNGG 2 cut(s) 29, 211
TaiI ACGT 1 cut(s) 45
TaqI TCGA 4 cut(s) 57, 75, 102, 247
TasI AATT 4 cut(s) 141, 193, 243, 287
TatI WGTACW 1 cut(s) 161
TfiI GAWTC 1 cut(s) 336
TspDTI ATGAA 2 cut(s) 187, 365
Van91I CCANNNNNTGG 1 cut(s) 332
XapI RAATTY 4 cut(s) 141, 193, 243, 287
XhoI CTCGAG 1 cut(s) 56
ZrmI AGTACT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.