AT-hook motif nuclear-localized protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom01g19740 |
| rosa_chinensis | RchiOBHm_Chr2g0111991 |
| rosa_roxburghii | Rroxscaffold_5G00349060 |
| rosa_samantha | Rh3BG144600 Rh3CG146000 Rh3DG145800 Rh5AG181200 Rh6AG351100 Rh7BG241500 |
| rosa_wichuraiana | Rw3G020720 Rw5G016440 Rw6G014630 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 274 |
| AcsI | RAATTY | 2 cut(s) | 181, 217 |
| AfaI | GTAC | 2 cut(s) | 260, 337 |
| AgsI | TTSAA | 3 cut(s) | 180, 222, 265 |
| AjnI | CCWGG | 1 cut(s) | 19 |
| Alw26I | GTCTC | 1 cut(s) | 165 |
| AoxI | GGCC | 1 cut(s) | 274 |
| ApoI | RAATTY | 2 cut(s) | 181, 217 |
| AsuHPI | GGTGA | 3 cut(s) | 17, 66, 122 |
| BalI | TGGCCA | 1 cut(s) | 276 |
| BciT130I | CCWGG | 1 cut(s) | 21 |
| BclI | TGATCA | 1 cut(s) | 301 |
| BcoDI | GTCTC | 1 cut(s) | 165 |
| BfaI | CTAG | 1 cut(s) | 370 |
| BfmI | CTRYAG | 1 cut(s) | 127 |
| BmcAI | AGTACT | 1 cut(s) | 260 |
| Bme1390I | CCNGG | 1 cut(s) | 21 |
| BmrFI | CCNGG | 1 cut(s) | 21 |
| BmsI | GCATC | 2 cut(s) | 189, 211 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 221, 253 |
| BseBI | CCWGG | 1 cut(s) | 21 |
| BseMII | CTCAG | 1 cut(s) | 179 |
| BshFI | GGCC | 1 cut(s) | 276 |
| BslFI | GGGAC | 1 cut(s) | 68 |
| BsmAI | GTCTC | 1 cut(s) | 165 |
| BsmFI | GGGAC | 1 cut(s) | 68 |
| BsnI | GGCC | 1 cut(s) | 276 |
| Bsp143I | GATC | 2 cut(s) | 301, 315 |
| BspANI | GGCC | 1 cut(s) | 276 |
| BspCNI | CTCAG | 1 cut(s) | 180 |
| BspHI | TCATGA | 2 cut(s) | 147, 304 |
| BssMI | GATC | 2 cut(s) | 301, 315 |
| Bst2UI | CCWGG | 1 cut(s) | 21 |
| Bst4CI | ACNGT | 1 cut(s) | 131 |
| Bst6I | CTCTTC | 1 cut(s) | 249 |
| BstDEI | CTNAG | 2 cut(s) | 45, 188 |
| BstEII | GGTNACC | 1 cut(s) | 23 |
| BstKTI | GATC | 2 cut(s) | 304, 318 |
| BstMAI | GTCTC | 1 cut(s) | 165 |
| BstMBI | GATC | 2 cut(s) | 301, 315 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 49 |
| BstNI | CCWGG | 1 cut(s) | 21 |
| BstPI | GGTNACC | 1 cut(s) | 23 |
| BstSCI | CCNGG | 1 cut(s) | 19 |
| BstSFI | CTRYAG | 1 cut(s) | 127 |
| BsuRI | GGCC | 1 cut(s) | 276 |
| BtsIMutI | CAGTG | 2 cut(s) | 72, 136 |
| CciI | TCATGA | 2 cut(s) | 147, 304 |
| CsiI | ACCWGGT | 1 cut(s) | 19 |
| Csp6I | GTAC | 2 cut(s) | 259, 336 |
| CviAII | CATG | 2 cut(s) | 148, 305 |
| CviJI | RGCY | 5 cut(s) | 43, 126, 192, 270, 276 |
| CviKI_1 | RGCY | 5 cut(s) | 43, 126, 192, 270, 276 |
| CviQI | GTAC | 2 cut(s) | 259, 336 |
| DdeI | CTNAG | 2 cut(s) | 45, 188 |
| DpnI | GATC | 2 cut(s) | 303, 317 |
| DpnII | GATC | 2 cut(s) | 301, 315 |
| DraI | TTTAAA | 1 cut(s) | 214 |
| EaeI | YGGCCR | 1 cut(s) | 274 |
| Eam1104I | CTCTTC | 1 cut(s) | 249 |
| EarI | CTCTTC | 1 cut(s) | 249 |
| Eco91I | GGTNACC | 1 cut(s) | 23 |
| EcoO65I | GGTNACC | 1 cut(s) | 23 |
| EcoRII | CCWGG | 1 cut(s) | 19 |
| EcoT22I | ATGCAT | 1 cut(s) | 204 |
| FaeI | CATG | 2 cut(s) | 151, 308 |
| FaiI | YATR | 3 cut(s) | 149, 306, 356 |
| FaqI | GGGAC | 1 cut(s) | 68 |
| FatI | CATG | 2 cut(s) | 147, 304 |
| FbaI | TGATCA | 1 cut(s) | 301 |
| FspBI | CTAG | 1 cut(s) | 370 |
| HaeIII | GGCC | 1 cut(s) | 276 |
| Hin1II | CATG | 2 cut(s) | 151, 308 |
| HinfI | GANTC | 2 cut(s) | 57, 308 |
| HphI | GGTGA | 3 cut(s) | 17, 66, 122 |
| Hpy188I | TCNGA | 2 cut(s) | 189, 207 |
| Hpy188III | TCNNGA | 2 cut(s) | 148, 305 |
| HpyAV | CCTTC | 2 cut(s) | 115, 172 |
| HpyCH4III | ACNGT | 1 cut(s) | 131 |
| HpyCH4V | TGCA | 1 cut(s) | 202 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 49 |
| HpyF3I | CTNAG | 2 cut(s) | 45, 188 |
| Hsp92II | CATG | 2 cut(s) | 151, 308 |
| Ksp22I | TGATCA | 1 cut(s) | 301 |
| Kzo9I | GATC | 2 cut(s) | 301, 315 |
| LpnPI | CCDG | 6 cut(s) | 6, 17, 33, 41, 209, 258 |
| LweI | GCATC | 2 cut(s) | 189, 211 |
| MabI | ACCWGGT | 1 cut(s) | 19 |
| MaeI | CTAG | 1 cut(s) | 370 |
| MaeIII | GTNAC | 3 cut(s) | 23, 233, 362 |
| MalI | GATC | 2 cut(s) | 303, 317 |
| MboI | GATC | 2 cut(s) | 301, 315 |
| MboII | GAAGA | 4 cut(s) | 125, 263, 266, 343 |
| MlsI | TGGCCA | 1 cut(s) | 276 |
| MluCI | AATT | 4 cut(s) | 175, 181, 217, 283 |
| MluNI | TGGCCA | 1 cut(s) | 276 |
| Mox20I | TGGCCA | 1 cut(s) | 276 |
| Mph1103I | ATGCAT | 1 cut(s) | 204 |
| MscI | TGGCCA | 1 cut(s) | 276 |
| MseI | TTAA | 2 cut(s) | 137, 213 |
| Msp20I | TGGCCA | 1 cut(s) | 276 |
| MspR9I | CCNGG | 1 cut(s) | 21 |
| MvaI | CCWGG | 1 cut(s) | 21 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 49 |
| NdeII | GATC | 2 cut(s) | 301, 315 |
| NlaIII | CATG | 2 cut(s) | 151, 308 |
| NmuCI | GTSAC | 2 cut(s) | 23, 362 |
| NsiI | ATGCAT | 1 cut(s) | 204 |
| PagI | TCATGA | 2 cut(s) | 147, 304 |
| PfeI | GAWTC | 2 cut(s) | 57, 308 |
| Psp6I | CCWGG | 1 cut(s) | 19 |
| PspEI | GGTNACC | 1 cut(s) | 23 |
| PspGI | CCWGG | 1 cut(s) | 19 |
| RsaI | GTAC | 2 cut(s) | 260, 337 |
| RsaNI | GTAC | 2 cut(s) | 259, 336 |
| SaqAI | TTAA | 2 cut(s) | 137, 213 |
| Sau3AI | GATC | 2 cut(s) | 301, 315 |
| ScaI | AGTACT | 1 cut(s) | 260 |
| ScrFI | CCNGG | 1 cut(s) | 21 |
| SetI | ASST | 2 cut(s) | 25, 198 |
| SexAI | ACCWGGT | 1 cut(s) | 19 |
| SfaNI | GCATC | 2 cut(s) | 189, 211 |
| SfcI | CTRYAG | 1 cut(s) | 127 |
| Sse9I | AATT | 4 cut(s) | 175, 181, 217, 283 |
| SspMI | CTAG | 1 cut(s) | 370 |
| StyD4I | CCNGG | 1 cut(s) | 19 |
| TaaI | ACNGT | 1 cut(s) | 131 |
| TasI | AATT | 4 cut(s) | 175, 181, 217, 283 |
| TatI | WGTACW | 1 cut(s) | 258 |
| TfiI | GAWTC | 2 cut(s) | 57, 308 |
| Tru1I | TTAA | 2 cut(s) | 137, 213 |
| Tru9I | TTAA | 2 cut(s) | 137, 213 |
| TscAI | CASTG | 2 cut(s) | 72, 136 |
| TseFI | GTSAC | 2 cut(s) | 23, 362 |
| Tsp45I | GTSAC | 2 cut(s) | 23, 362 |
| TspDTI | ATGAA | 3 cut(s) | 134, 136, 343 |
| TspRI | CASTG | 2 cut(s) | 72, 136 |
| XapI | RAATTY | 2 cut(s) | 181, 217 |
| XspI | CTAG | 1 cut(s) | 370 |
| ZrmI | AGTACT | 1 cut(s) | 260 |
| Zsp2I | ATGCAT | 1 cut(s) | 204 |