Rh7BG241500

AT-hook motif nuclear-localized protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0017759
Physical Location & Seq
Reverse (-)
21300655 .. 21302774
2120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG241500.1

Sequence Viewer

Length: 564 bp
ATGTGTTATGGAGGAATGGGTGTAGGTGGGGGCGTTATGGTTCTAGGTGGGATTAAATCCCCCCGGGATATGGTGCTCACCCATTTGGATCCTTTTTGCAGTCCATATTACAATATTGAATTGATGGAGATACATGTGGCTGGAAAGGCTTTGAAGTTTTACCCAAAGGTGTTTGATGAAAAGCATGGAACTGTCTTGGATAGTGGAACGACGTATGCATACTCTCCAAAGGATGCTTTTATTGCATTTAAGGATGCTGTTATGGTGGGAAGTTTTCTACCAGGTCACCAGCAGGAACACAAGCCTAAGAAGCAGAGAATCGAGTCAGTGTCATCACCGATTGTCCCTATCATTGTCAACTCTGTGATTGGTGAAGAAATGAAGGGCTACAGTGGATTAAAACCCTTCATGATGACTACTTCCTTCCACGGAGACAATTCAAATTCTCTGAGCCACCTGATGCATCAGAACTTTAAAAATTCAACTTTTGAGAGTAACTCATTGGTAGCAGAAGAAGAGTACTCCAAAGGCTCTGGCCAATCAAACTGTGAAGTTTCTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

187

Amino Acids

20.47

Weight (kDa)

6.22

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_C PF14541 37 - 87 2.1e-06 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017759)

Species Orthologous Gene IDs
pyrus_communis pycom01g19740
rosa_chinensis RchiOBHm_Chr2g0111991
rosa_roxburghii Rroxscaffold_5G00349060
rosa_samantha Rh3BG144600 Rh3CG146000 Rh3DG145800 Rh5AG181200 Rh6AG351100 Rh7BG241500
rosa_wichuraiana Rw3G020720 Rw5G016440 Rw6G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 83, 96
AcoI YGGCCR 1 cut(s) 535
AcsI RAATTY 2 cut(s) 442, 478
AfaI GTAC 1 cut(s) 521
AfiI CCNNNNNNNGG 1 cut(s) 70
AflIII ACRYGT 1 cut(s) 133
AgsI TTSAA 4 cut(s) 119, 154, 441, 483
AjnI CCWGG 1 cut(s) 280
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 1 cut(s) 426
AlwI GGATC 2 cut(s) 83, 96
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 1 cut(s) 535
ApoI RAATTY 2 cut(s) 442, 478
AsuC2I CCSGG 2 cut(s) 64, 65
AsuHPI GGTGA 4 cut(s) 70, 278, 327, 383
AvaI CYCGRG 1 cut(s) 63
BalI TGGCCA 1 cut(s) 537
BamHI GGATCC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 78
BccI CCATC 1 cut(s) 118
BciT130I CCWGG 1 cut(s) 282
BcnI CCSGG 2 cut(s) 64, 65
BcoDI GTCTC 1 cut(s) 426
BfaI CTAG 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 388
BmcAI AGTACT 1 cut(s) 521
Bme1390I CCNGG 3 cut(s) 64, 65, 282
BmeT110I CYCGRG 1 cut(s) 63
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 3 cut(s) 64, 65, 282
BmsI GCATC 4 cut(s) 223, 244, 450, 472
BplI GAGNNNNNCTC 2 cut(s) 482, 514
BpuMI CCSGG 2 cut(s) 64, 65
BsaJI CCNNGG 3 cut(s) 62, 63, 427
Bsc4I CCNNNNNNNGG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 3 cut(s) 62, 63, 427
BseGI GGATG 2 cut(s) 238, 259
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 440
BshFI GGCC 1 cut(s) 537
BsiHKAI GWGCWC 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 63
BsiSI CCGG 1 cut(s) 64
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 1 cut(s) 426
BsmFI GGGAC 1 cut(s) 329
BsnI GGCC 1 cut(s) 537
BsoBI CYCGRG 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 1 cut(s) 88
BspANI GGCC 1 cut(s) 537
BspCNI CTCAG 1 cut(s) 441
BspHI TCATGA 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 2 cut(s) 83, 96
BssECI CCNNGG 3 cut(s) 62, 63, 427
BssMI GATC 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 3 cut(s) 193, 392, 548
Bst6I CTCTTC 1 cut(s) 510
BstDEI CTNAG 2 cut(s) 306, 449
BstDSI CCRYGG 1 cut(s) 427
BstEII GGTNACC 1 cut(s) 284
BstF5I GGATG 2 cut(s) 238, 259
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 3 cut(s) 146, 242, 310
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 137
BstPI GGTNACC 1 cut(s) 284
BstSCI CCNGG 3 cut(s) 62, 63, 280
BstSFI CTRYAG 1 cut(s) 388
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BsuRI GGCC 1 cut(s) 537
BtgI CCRYGG 1 cut(s) 427
BtsCI GGATG 2 cut(s) 238, 259
BtsIMutI CAGTG 2 cut(s) 333, 397
CciI TCATGA 1 cut(s) 408
Cfr9I CCCGGG 1 cut(s) 63
CsiI ACCWGGT 1 cut(s) 280
Csp6I GTAC 1 cut(s) 520
CviAII CATG 3 cut(s) 134, 185, 409
CviJI RGCY 7 cut(s) 140, 149, 304, 387, 453, 531, 537
CviKI_1 RGCY 7 cut(s) 140, 149, 304, 387, 453, 531, 537
CviQI GTAC 1 cut(s) 520
DdeI CTNAG 2 cut(s) 306, 449
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
DraI TTTAAA 1 cut(s) 475
EaeI YGGCCR 1 cut(s) 535
Eam1104I CTCTTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 510
Eco88I CYCGRG 1 cut(s) 63
Eco91I GGTNACC 1 cut(s) 284
EcoO65I GGTNACC 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 280
EcoT22I ATGCAT 2 cut(s) 220, 465
FaeI CATG 3 cut(s) 137, 188, 412
FaqI GGGAC 1 cut(s) 329
FatI CATG 3 cut(s) 133, 184, 408
FokI GGATG 2 cut(s) 245, 266
FspBI CTAG 1 cut(s) 44
HaeIII GGCC 1 cut(s) 537
HapII CCGG 1 cut(s) 64
Hin1II CATG 3 cut(s) 137, 188, 412
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 2 cut(s) 318, 323
HpaII CCGG 1 cut(s) 64
HphI GGTGA 4 cut(s) 70, 278, 327, 383
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 2 cut(s) 450, 468
Hpy188III TCNNGA 1 cut(s) 409
Hpy8I GTNNAC 1 cut(s) 358
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 3 cut(s) 376, 415, 433
HpyCH4III ACNGT 3 cut(s) 193, 392, 548
HpyCH4IV ACGT 1 cut(s) 212
HpyCH4V TGCA 4 cut(s) 99, 218, 245, 463
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 242, 310
HpyF3I CTNAG 2 cut(s) 306, 449
HpySE526I ACGT 1 cut(s) 212
Hsp92II CATG 3 cut(s) 137, 188, 412
Kzo9I GATC 1 cut(s) 88
LpnPI CCDG 8 cut(s) 77, 126, 267, 278, 294, 302, 470, 519
LweI GCATC 4 cut(s) 223, 244, 450, 472
MabI ACCWGGT 1 cut(s) 280
MaeI CTAG 1 cut(s) 44
MaeII ACGT 1 cut(s) 212
MaeIII GTNAC 2 cut(s) 284, 494
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 3 cut(s) 386, 524, 527
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 78
MlsI TGGCCA 1 cut(s) 537
MluCI AATT 4 cut(s) 119, 436, 442, 478
MluNI TGGCCA 1 cut(s) 537
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 537
Mph1103I ATGCAT 2 cut(s) 220, 465
MscI TGGCCA 1 cut(s) 537
MseI TTAA 4 cut(s) 54, 249, 398, 474
Msp20I TGGCCA 1 cut(s) 537
MspI CCGG 1 cut(s) 64
MspR9I CCNGG 3 cut(s) 64, 65, 282
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 3 cut(s) 146, 242, 310
NciI CCSGG 2 cut(s) 64, 65
NdeII GATC 1 cut(s) 88
NlaIII CATG 3 cut(s) 137, 188, 412
NlaIV GGNNCC 1 cut(s) 90
NmuCI GTSAC 1 cut(s) 284
NsiI ATGCAT 2 cut(s) 220, 465
NspI RCATGY 1 cut(s) 137
PagI TCATGA 1 cut(s) 408
PciI ACATGT 1 cut(s) 133
PfeI GAWTC 1 cut(s) 318
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
PscI ACATGT 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 280
PspEI GGTNACC 1 cut(s) 284
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 90
PsuI RGATCY 1 cut(s) 88
RsaI GTAC 1 cut(s) 521
RsaNI GTAC 1 cut(s) 520
SaqAI TTAA 4 cut(s) 54, 249, 398, 474
Sau3AI GATC 1 cut(s) 88
ScaI AGTACT 1 cut(s) 521
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 3 cut(s) 64, 65, 282
SduI GDGCHC 1 cut(s) 78
SetI ASST 6 cut(s) 28, 49, 171, 215, 286, 459
SexAI ACCWGGT 1 cut(s) 280
SfaNI GCATC 4 cut(s) 223, 244, 450, 472
SfcI CTRYAG 1 cut(s) 388
SmaI CCCGGG 1 cut(s) 65
Sse9I AATT 4 cut(s) 119, 436, 442, 478
SspI AATATT 1 cut(s) 115
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 3 cut(s) 62, 63, 280
TaaI ACNGT 3 cut(s) 193, 392, 548
TaiI ACGT 1 cut(s) 215
TaqI TCGA 1 cut(s) 321
TasI AATT 4 cut(s) 119, 436, 442, 478
TatI WGTACW 1 cut(s) 519
TfiI GAWTC 1 cut(s) 318
Tru1I TTAA 4 cut(s) 54, 249, 398, 474
Tru9I TTAA 4 cut(s) 54, 249, 398, 474
TscAI CASTG 2 cut(s) 333, 397
TseFI GTSAC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 3 cut(s) 192, 395, 397
TspGWI ACGGA 1 cut(s) 444
TspMI CCCGGG 1 cut(s) 63
TspRI CASTG 2 cut(s) 333, 397
XapI RAATTY 2 cut(s) 442, 478
XceI RCATGY 1 cut(s) 137
XmaI CCCGGG 1 cut(s) 63
XspI CTAG 1 cut(s) 44
ZrmI AGTACT 1 cut(s) 521
Zsp2I ATGCAT 2 cut(s) 220, 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.