Rh5AG181200

AT-hook motif nuclear-localized protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0017759
Physical Location & Seq
Forward (+)
20516661 .. 20517032
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG181200.1

Sequence Viewer

Length: 372 bp
ATGGTGGGAAGTTTTCTACCAGGTCACCAGCAGGAACACAAGCCTAAGAAGCAGAGAATCAAGTCAGTGTCATCACCCATTGTCCCTATCATTGTCAACTCTGTGATTGGTGAAGAAATGAAGGGCTACAGTGGATTAAAACCCTTCATGATGACTACTTCCTTCCACAGAGACAATTCAAATTCTCTGAGCCACCTGATGCATCAGAACTTTAAAAATTCAACTTTTGAGAGTAACTCATTGGTAGCAGAAGAAGAGTACTTCAAAGGCTCTGGCCAATCAAATTGTGAAGTTTCTTTTGATCATGATTCCACGGTCTCCTTGTGTGATAGTTGTACCCGAATGGTTTTCTTCAGACTTGGTGACATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

123

Amino Acids

13.82

Weight (kDa)

6.58

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017759)

Species Orthologous Gene IDs
pyrus_communis pycom01g19740
rosa_chinensis RchiOBHm_Chr2g0111991
rosa_roxburghii Rroxscaffold_5G00349060
rosa_samantha Rh3BG144600 Rh3CG146000 Rh3DG145800 Rh5AG181200 Rh6AG351100 Rh7BG241500
rosa_wichuraiana Rw3G020720 Rw5G016440 Rw6G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 274
AcsI RAATTY 2 cut(s) 181, 217
AcuI CTGAAG 1 cut(s) 337
AfaI GTAC 2 cut(s) 260, 337
AgsI TTSAA 3 cut(s) 180, 222, 265
AjnI CCWGG 1 cut(s) 19
Alw26I GTCTC 2 cut(s) 165, 322
AoxI GGCC 1 cut(s) 274
ApoI RAATTY 2 cut(s) 181, 217
AsuHPI GGTGA 3 cut(s) 17, 66, 122
BalI TGGCCA 1 cut(s) 276
BciT130I CCWGG 1 cut(s) 21
BclI TGATCA 1 cut(s) 301
BcoDI GTCTC 2 cut(s) 165, 322
BfaI CTAG 1 cut(s) 370
BfmI CTRYAG 1 cut(s) 127
BmcAI AGTACT 1 cut(s) 260
Bme1390I CCNGG 1 cut(s) 21
BmrFI CCNGG 1 cut(s) 21
BmsI GCATC 2 cut(s) 189, 211
BplI GAGNNNNNCTC 2 cut(s) 221, 253
BsaI GGTCTC 1 cut(s) 322
BsaJI CCNNGG 1 cut(s) 312
BseBI CCWGG 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 312
BseMII CTCAG 1 cut(s) 179
BshFI GGCC 1 cut(s) 276
BslFI GGGAC 1 cut(s) 68
BsmAI GTCTC 2 cut(s) 165, 322
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 1 cut(s) 276
Bso31I GGTCTC 1 cut(s) 322
Bsp143I GATC 1 cut(s) 301
BspANI GGCC 1 cut(s) 276
BspCNI CTCAG 1 cut(s) 180
BspHI TCATGA 2 cut(s) 147, 304
BspTNI GGTCTC 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 1 cut(s) 301
Bst2UI CCWGG 1 cut(s) 21
Bst4CI ACNGT 2 cut(s) 131, 316
Bst6I CTCTTC 1 cut(s) 249
BstDEI CTNAG 2 cut(s) 45, 188
BstDSI CCRYGG 1 cut(s) 312
BstEII GGTNACC 1 cut(s) 23
BstKTI GATC 1 cut(s) 304
BstMAI GTCTC 2 cut(s) 165, 322
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 1 cut(s) 49
BstNI CCWGG 1 cut(s) 21
BstPI GGTNACC 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 19
BstSFI CTRYAG 1 cut(s) 127
BsuRI GGCC 1 cut(s) 276
BtgI CCRYGG 1 cut(s) 312
BtsIMutI CAGTG 2 cut(s) 72, 136
CciI TCATGA 2 cut(s) 147, 304
CsiI ACCWGGT 1 cut(s) 19
Csp6I GTAC 2 cut(s) 259, 336
CviAII CATG 2 cut(s) 148, 305
CviJI RGCY 5 cut(s) 43, 126, 192, 270, 276
CviKI_1 RGCY 5 cut(s) 43, 126, 192, 270, 276
CviQI GTAC 2 cut(s) 259, 336
DdeI CTNAG 2 cut(s) 45, 188
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
DraI TTTAAA 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 337
Eco91I GGTNACC 1 cut(s) 23
EcoO65I GGTNACC 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 19
EcoT22I ATGCAT 1 cut(s) 204
FaeI CATG 2 cut(s) 151, 308
FaiI YATR 2 cut(s) 149, 306
FaqI GGGAC 1 cut(s) 68
FatI CATG 2 cut(s) 147, 304
FbaI TGATCA 1 cut(s) 301
FspBI CTAG 1 cut(s) 370
HaeIII GGCC 1 cut(s) 276
Hin1II CATG 2 cut(s) 151, 308
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 2 cut(s) 57, 308
HphI GGTGA 3 cut(s) 17, 66, 122
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 3 cut(s) 189, 207, 356
Hpy188III TCNNGA 2 cut(s) 148, 305
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 3 cut(s) 115, 154, 172
HpyCH4III ACNGT 2 cut(s) 131, 316
HpyCH4V TGCA 1 cut(s) 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
HpyF3I CTNAG 2 cut(s) 45, 188
Hsp92II CATG 2 cut(s) 151, 308
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 1 cut(s) 301
LpnPI CCDG 6 cut(s) 6, 17, 33, 41, 209, 258
LweI GCATC 2 cut(s) 189, 211
MabI ACCWGGT 1 cut(s) 19
MaeI CTAG 1 cut(s) 370
MaeIII GTNAC 3 cut(s) 23, 233, 362
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MboII GAAGA 4 cut(s) 125, 263, 266, 343
MlsI TGGCCA 1 cut(s) 276
MluCI AATT 4 cut(s) 175, 181, 217, 283
MluNI TGGCCA 1 cut(s) 276
Mox20I TGGCCA 1 cut(s) 276
Mph1103I ATGCAT 1 cut(s) 204
MscI TGGCCA 1 cut(s) 276
MseI TTAA 2 cut(s) 137, 213
Msp20I TGGCCA 1 cut(s) 276
MspR9I CCNGG 1 cut(s) 21
MvaI CCWGG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 49
NdeII GATC 1 cut(s) 301
NlaIII CATG 2 cut(s) 151, 308
NmuCI GTSAC 2 cut(s) 23, 362
NsiI ATGCAT 1 cut(s) 204
PagI TCATGA 2 cut(s) 147, 304
PfeI GAWTC 2 cut(s) 57, 308
Psp6I CCWGG 1 cut(s) 19
PspEI GGTNACC 1 cut(s) 23
PspGI CCWGG 1 cut(s) 19
RsaI GTAC 2 cut(s) 260, 337
RsaNI GTAC 2 cut(s) 259, 336
SaqAI TTAA 2 cut(s) 137, 213
Sau3AI GATC 1 cut(s) 301
ScaI AGTACT 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 21
SetI ASST 2 cut(s) 25, 198
SexAI ACCWGGT 1 cut(s) 19
SfaNI GCATC 2 cut(s) 189, 211
SfcI CTRYAG 1 cut(s) 127
Sse9I AATT 4 cut(s) 175, 181, 217, 283
SspMI CTAG 1 cut(s) 370
StyD4I CCNGG 1 cut(s) 19
TaaI ACNGT 2 cut(s) 131, 316
TasI AATT 4 cut(s) 175, 181, 217, 283
TatI WGTACW 1 cut(s) 258
TfiI GAWTC 2 cut(s) 57, 308
Tru1I TTAA 2 cut(s) 137, 213
Tru9I TTAA 2 cut(s) 137, 213
TscAI CASTG 2 cut(s) 72, 136
TseFI GTSAC 2 cut(s) 23, 362
Tsp45I GTSAC 2 cut(s) 23, 362
TspDTI ATGAA 2 cut(s) 134, 136
TspRI CASTG 2 cut(s) 72, 136
XapI RAATTY 2 cut(s) 181, 217
XspI CTAG 1 cut(s) 370
ZrmI AGTACT 1 cut(s) 260
Zsp2I ATGCAT 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.