Rh4AG014300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0017001
Physical Location & Seq
Reverse (-)
2716917 .. 2717333
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG014300.1

Sequence Viewer

Length: 417 bp
ATGTGGCTAGCTTATATTCCATTATCTGATAAAATAAAGGGAAAGGTGGATCAAAATGGCCAGTGTCAAGTTCGATTTTACTGTGCTGGAATGAAAAGCTATGGAGTTCACCTCGTATGCCAAGCACCGAATGAATATTCAAATAAGATTGTAATGGCGGCTGAACCTGCCCATGAGAGTGGTATGCTAGACTGCCTTTCGTTTTCTTATGCGAATCCAGAACAAAAGAGGCCTCGTACTGAAGCCACCGACGATTATGACCATCAACAAGAGCAGCATGAGCAATCAATAGGAATGATTCCTTCGAAACGACTGTGCACTGAGGAGCAACCATCGATGGCTCCCAACCCAATCATCCACGACTACTCTGATTACTCTGATTACTCTGCATCTGCATCCACATCTTCCCTGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.55

Weight (kDa)

5.07

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 175
AciI CCGC 1 cut(s) 158
AclWI GGATC 1 cut(s) 57
AcoI YGGCCR 1 cut(s) 58
AcuI CTGAAG 1 cut(s) 261
AfaI GTAC 1 cut(s) 238
AgsI TTSAA 1 cut(s) 141
AluBI AGCT 2 cut(s) 11, 99
AluI AGCT 2 cut(s) 11, 99
Alw21I GWGCWC 1 cut(s) 320
Alw44I GTGCAC 1 cut(s) 316
AlwI GGATC 1 cut(s) 57
AoxI GGCC 2 cut(s) 58, 230
ApaLI GTGCAC 1 cut(s) 316
ApeKI GCWGC 1 cut(s) 274
AsuHPI GGTGA 1 cut(s) 101
AsuII TTCGAA 1 cut(s) 305
AsuNHI GCTAGC 1 cut(s) 7
BaeGI GKGCMC 1 cut(s) 320
BalI TGGCCA 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 320
BbvI GCAGC 1 cut(s) 286
BccI CCATC 3 cut(s) 270, 331, 340
BfaI CTAG 2 cut(s) 8, 188
BfuAI ACCTGC 1 cut(s) 175
BisI GCNGC 2 cut(s) 159, 275
BlsI GCNGC 2 cut(s) 160, 276
BmiI GGNNCC 1 cut(s) 342
BmsI GCATC 2 cut(s) 398, 404
BmtI GCTAGC 1 cut(s) 11
BplI GAGNNNNNCTC 2 cut(s) 96, 128
Bpu14I TTCGAA 1 cut(s) 305
Bsa29I ATCGAT 1 cut(s) 335
Bse1I ACTGG 1 cut(s) 61
BseCI ATCGAT 1 cut(s) 335
BseGI GGATG 2 cut(s) 354, 395
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 1 cut(s) 61
BseRI GAGGAG 1 cut(s) 338
BseSI GKGCMC 1 cut(s) 320
BseXI GCAGC 1 cut(s) 286
BshFI GGCC 2 cut(s) 60, 232
BshVI ATCGAT 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 320
BsnI GGCC 2 cut(s) 60, 232
Bsp119I TTCGAA 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 320
Bsp143I GATC 1 cut(s) 49
BspACI CCGC 1 cut(s) 158
BspANI GGCC 2 cut(s) 60, 232
BspCNI CTCAG 1 cut(s) 313
BspDI ATCGAT 1 cut(s) 335
BspLI GGNNCC 1 cut(s) 342
BspMI ACCTGC 1 cut(s) 175
BspOI GCTAGC 1 cut(s) 11
BspPI GGATC 1 cut(s) 57
BspT104I TTCGAA 1 cut(s) 305
BsrI ACTGG 1 cut(s) 61
BssMI GATC 1 cut(s) 49
Bst4CI ACNGT 2 cut(s) 83, 315
BstBI TTCGAA 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 1 cut(s) 321
BstF5I GGATG 2 cut(s) 354, 395
BstKTI GATC 1 cut(s) 52
BstMBI GATC 1 cut(s) 49
BstMWI GCNNNNNNNGC 2 cut(s) 167, 280
BstSLI GKGCMC 1 cut(s) 320
BstV1I GCAGC 1 cut(s) 286
BstXI CCANNNNNNTGG 1 cut(s) 179
Bsu15I ATCGAT 1 cut(s) 335
BsuRI GGCC 2 cut(s) 60, 232
BsuTUI ATCGAT 1 cut(s) 335
BtsCI GGATG 2 cut(s) 354, 395
BtsIMutI CAGTG 2 cut(s) 68, 318
BveI ACCTGC 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 9
ClaI ATCGAT 1 cut(s) 335
Csp6I GTAC 1 cut(s) 237
CviAII CATG 2 cut(s) 173, 278
CviJI RGCY 8 cut(s) 7, 11, 60, 99, 161, 232, 245, 341
CviKI_1 RGCY 8 cut(s) 7, 11, 60, 99, 161, 232, 245, 341
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 1 cut(s) 321
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
EaeI YGGCCR 1 cut(s) 58
Eco147I AGGCCT 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 261
FaeI CATG 2 cut(s) 176, 281
FaiI YATR 8 cut(s) 15, 102, 118, 174, 185, 210, 258, 279
FatI CATG 2 cut(s) 172, 277
Fnu4HI GCNGC 2 cut(s) 159, 275
FokI GGATG 2 cut(s) 341, 382
Fsp4HI GCNGC 2 cut(s) 159, 275
FspBI CTAG 2 cut(s) 8, 188
GluI GCNGC 2 cut(s) 159, 275
HaeIII GGCC 2 cut(s) 60, 232
Hin1II CATG 2 cut(s) 176, 281
HinfI GANTC 2 cut(s) 214, 298
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 2 cut(s) 109, 318
Hpy188I TCNGA 3 cut(s) 28, 370, 379
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 2 cut(s) 109, 318
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 1 cut(s) 312
HpyCH4III ACNGT 2 cut(s) 83, 315
HpyCH4V TGCA 3 cut(s) 318, 389, 395
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 280
HpyF3I CTNAG 1 cut(s) 321
Hsp92II CATG 2 cut(s) 176, 281
Kzo9I GATC 1 cut(s) 49
LmnI GCTCC 2 cut(s) 325, 346
LpnPI CCDG 4 cut(s) 72, 74, 180, 231
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 2 cut(s) 398, 404
MaeI CTAG 2 cut(s) 8, 188
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 1 cut(s) 396
MhlI GDGCHC 1 cut(s) 320
MlsI TGGCCA 1 cut(s) 60
MluNI TGGCCA 1 cut(s) 60
MnlI CCTC 4 cut(s) 122, 222, 243, 316
Mox20I TGGCCA 1 cut(s) 60
MscI TGGCCA 1 cut(s) 60
MslI CAYNNNNRTG 1 cut(s) 177
Msp20I TGGCCA 1 cut(s) 60
MwoI GCNNNNNNNGC 2 cut(s) 167, 280
NdeII GATC 1 cut(s) 49
NheI GCTAGC 1 cut(s) 7
NlaIII CATG 2 cut(s) 176, 281
NlaIV GGNNCC 1 cut(s) 342
NspV TTCGAA 1 cut(s) 305
PceI AGGCCT 1 cut(s) 232
PfeI GAWTC 2 cut(s) 214, 298
PkrI GCNGC 2 cut(s) 160, 276
PspN4I GGNNCC 1 cut(s) 342
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
RseI CAYNNNNRTG 1 cut(s) 177
SatI GCNGC 2 cut(s) 159, 275
Sau3AI GATC 1 cut(s) 49
SduI GDGCHC 1 cut(s) 320
SetI ASST 5 cut(s) 13, 48, 101, 114, 169
SfaNI GCATC 2 cut(s) 398, 404
SfuI TTCGAA 1 cut(s) 305
SmiMI CAYNNNNRTG 1 cut(s) 177
SseBI AGGCCT 1 cut(s) 232
SsiI CCGC 1 cut(s) 158
SspI AATATT 1 cut(s) 137
SspMI CTAG 2 cut(s) 8, 188
StuI AGGCCT 1 cut(s) 232
TaaI ACNGT 2 cut(s) 83, 315
TaqI TCGA 3 cut(s) 73, 305, 335
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 2 cut(s) 214, 298
TscAI CASTG 2 cut(s) 68, 325
TseI GCWGC 1 cut(s) 274
TspDTI ATGAA 2 cut(s) 107, 147
TspRI CASTG 2 cut(s) 68, 325
VneI GTGCAC 1 cut(s) 316
XspI CTAG 2 cut(s) 8, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.