Rh4AG026500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0017001
Physical Location & Seq
Forward (+)
5110706 .. 5111122
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG026500.1

Sequence Viewer

Length: 417 bp
ATGGTTATGTCCCCAGTCCCCATGTTCCCTGACCTGCATAGCTCCCATCACTCAACCACTTCCATCGATGAGAGTGGCATGCCGATGGTAGATTGGCTTTCCTGGCTTTCGTCGGCGAATGCAGAACAAAAGAGGCCTTGTGATGGAGCCAACTTGGATTATGACCATCAACAAGAGCAGCAGGAGCAACCAATTCCTTCAAAACGACACTGCACTGAGGATCAACCATCAATGCCTCCCTTCCCCGATCACTTTGCATCTTCATCTGCATCCACCTGTGATATGTGGAGGAGTCCCCTGGCTGAAATCTTCCAGACTTCTAATTGGCAAGCAAATCTTGATCCTCTTCCCAATTCACAGTCGACTCTGGCGAATCTGCAGTCTACCTCACCATCAACTCCAGAGTTCCAACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.49

Weight (kDa)

4.59

Isoelectric Point (pI)

91.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 42
AccI GTMKAC 2 cut(s) 362, 383
AclWI GGATC 2 cut(s) 228, 335
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 1 cut(s) 201
AjnI CCWGG 2 cut(s) 101, 297
AluBI AGCT 1 cut(s) 42
AluI AGCT 1 cut(s) 42
AlwI GGATC 2 cut(s) 228, 335
AoxI GGCC 1 cut(s) 134
ApeKI GCWGC 1 cut(s) 178
ArsI GACNNNNNNTTYG 2 cut(s) 365, 397
AsuHPI GGTGA 1 cut(s) 381
BbvI GCAGC 1 cut(s) 190
BccI CCATC 7 cut(s) 54, 71, 79, 137, 174, 235, 400
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BciT130I CCWGG 2 cut(s) 103, 299
BfmI CTRYAG 1 cut(s) 377
BfuAI ACCTGC 1 cut(s) 42
BisI GCNGC 1 cut(s) 179
BlsI GCNGC 1 cut(s) 180
Bme1390I CCNGG 2 cut(s) 103, 299
BmiI GGNNCC 1 cut(s) 148
BmrFI CCNGG 2 cut(s) 103, 299
BmrI ACTGGG 1 cut(s) 8
BmsI GCATC 2 cut(s) 266, 278
BmuI ACTGGG 1 cut(s) 8
BpmI CTGGAG 1 cut(s) 384
Bsa29I ATCGAT 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 297
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 14
BseBI CCWGG 2 cut(s) 103, 299
BseCI ATCGAT 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 269
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 14
BseRI GAGGAG 1 cut(s) 304
BseXI GCAGC 1 cut(s) 190
BsgI GTGCAG 1 cut(s) 196
BshFI GGCC 1 cut(s) 136
BshVI ATCGAT 1 cut(s) 66
BslFI GGGAC 2 cut(s) 2, 279
BslI CCNNNNNNNGG 1 cut(s) 143
BsmFI GGGAC 2 cut(s) 2, 279
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 1 cut(s) 136
Bsp143I GATC 3 cut(s) 220, 247, 340
BspANI GGCC 1 cut(s) 136
BspCNI CTCAG 1 cut(s) 208
BspDI ATCGAT 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 148
BspMAI CTGCAG 1 cut(s) 381
BspMI ACCTGC 1 cut(s) 42
BspPI GGATC 2 cut(s) 228, 335
BsrI ACTGG 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 3 cut(s) 220, 247, 340
Bst2UI CCWGG 2 cut(s) 103, 299
Bst4CI ACNGT 1 cut(s) 360
Bst6I CTCTTC 1 cut(s) 351
BstC8I GCNNGC 2 cut(s) 80, 330
BstDEI CTNAG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 269
BstKTI GATC 3 cut(s) 223, 250, 343
BstMBI GATC 3 cut(s) 220, 247, 340
BstMWI GCNNNNNNNGC 2 cut(s) 103, 184
BstNI CCWGG 2 cut(s) 103, 299
BstNSI RCATGY 1 cut(s) 82
BstSCI CCNGG 2 cut(s) 101, 297
BstSFI CTRYAG 1 cut(s) 377
BstV1I GCAGC 1 cut(s) 190
Bsu15I ATCGAT 1 cut(s) 66
BsuRI GGCC 1 cut(s) 136
BsuTUI ATCGAT 1 cut(s) 66
BtsCI GGATG 1 cut(s) 269
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 2 cut(s) 208, 213
BveI ACCTGC 1 cut(s) 42
Cac8I GCNNGC 2 cut(s) 80, 330
ClaI ATCGAT 1 cut(s) 66
CviAII CATG 2 cut(s) 22, 79
CviJI RGCY 6 cut(s) 42, 97, 106, 136, 149, 302
CviKI_1 RGCY 6 cut(s) 42, 97, 106, 136, 149, 302
DdeI CTNAG 1 cut(s) 216
DpnI GATC 3 cut(s) 222, 249, 342
DpnII GATC 3 cut(s) 220, 247, 340
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco147I AGGCCT 1 cut(s) 136
EcoRII CCWGG 2 cut(s) 101, 297
FaeI CATG 2 cut(s) 25, 82
FaiI YATR 6 cut(s) 8, 23, 39, 80, 162, 284
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FaqI GGGAC 2 cut(s) 2, 279
FatI CATG 2 cut(s) 21, 78
FblI GTMKAC 2 cut(s) 362, 383
Fnu4HI GCNGC 1 cut(s) 179
FokI GGATG 1 cut(s) 256
Fsp4HI GCNGC 1 cut(s) 179
GluI GCNGC 1 cut(s) 179
GsuI CTGGAG 1 cut(s) 384
HaeIII GGCC 1 cut(s) 136
Hin1II CATG 2 cut(s) 25, 82
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HinfI GANTC 3 cut(s) 292, 364, 373
HphI GGTGA 1 cut(s) 381
Hpy166II GTNNAC 2 cut(s) 363, 384
Hpy188III TCNNGA 3 cut(s) 313, 338, 401
Hpy8I GTNNAC 2 cut(s) 363, 384
Hpy99I CGWCG 1 cut(s) 115
HpyAV CCTTC 2 cut(s) 207, 250
HpyCH4III ACNGT 1 cut(s) 360
HpyCH4V TGCA 6 cut(s) 37, 122, 213, 257, 269, 379
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 184
HpyF3I CTNAG 1 cut(s) 216
Hsp92II CATG 2 cut(s) 25, 82
Kzo9I GATC 3 cut(s) 220, 247, 340
LmnI GCTCC 3 cut(s) 47, 146, 184
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 2 cut(s) 266, 278
MalI GATC 3 cut(s) 222, 249, 342
MboI GATC 3 cut(s) 220, 247, 340
MboII GAAGA 3 cut(s) 252, 301, 338
MluCI AATT 3 cut(s) 192, 322, 352
MlyI GAGTC 2 cut(s) 301, 358
MnlI CCTC 6 cut(s) 126, 211, 246, 282, 354, 397
MslI CAYNNNNRTG 1 cut(s) 83
MspR9I CCNGG 2 cut(s) 103, 299
Mva1269I GAATGC 1 cut(s) 124
MvaI CCWGG 2 cut(s) 103, 299
MwoI GCNNNNNNNGC 2 cut(s) 103, 184
NdeII GATC 3 cut(s) 220, 247, 340
NlaIII CATG 2 cut(s) 25, 82
NlaIV GGNNCC 1 cut(s) 148
NspI RCATGY 1 cut(s) 82
PaeI GCATGC 1 cut(s) 82
PceI AGGCCT 1 cut(s) 136
PcsI WCGNNNNNNNCGW 1 cut(s) 368
PctI GAATGC 1 cut(s) 124
PfeI GAWTC 1 cut(s) 373
PkrI GCNGC 1 cut(s) 180
PleI GAGTC 2 cut(s) 300, 358
PpsI GAGTC 2 cut(s) 300, 358
Psp6I CCWGG 2 cut(s) 101, 297
PspGI CCWGG 2 cut(s) 101, 297
PspN4I GGNNCC 1 cut(s) 148
PstI CTGCAG 1 cut(s) 381
RseI CAYNNNNRTG 1 cut(s) 83
SalI GTCGAC 1 cut(s) 361
SatI GCNGC 1 cut(s) 179
Sau3AI GATC 3 cut(s) 220, 247, 340
SchI GAGTC 2 cut(s) 301, 358
ScrFI CCNGG 2 cut(s) 103, 299
SetI ASST 4 cut(s) 36, 44, 278, 389
SfaNI GCATC 2 cut(s) 266, 278
SfcI CTRYAG 1 cut(s) 377
SmiMI CAYNNNNRTG 1 cut(s) 83
SphI GCATGC 1 cut(s) 82
Sse9I AATT 3 cut(s) 192, 322, 352
SseBI AGGCCT 1 cut(s) 136
StuI AGGCCT 1 cut(s) 136
StyD4I CCNGG 2 cut(s) 101, 297
TaaI ACNGT 1 cut(s) 360
TaqI TCGA 2 cut(s) 66, 362
TasI AATT 3 cut(s) 192, 322, 352
TfiI GAWTC 1 cut(s) 373
TscAI CASTG 2 cut(s) 215, 220
TseI GCWGC 1 cut(s) 178
TspDTI ATGAA 1 cut(s) 252
TspRI CASTG 2 cut(s) 215, 220
XceI RCATGY 1 cut(s) 82
XmiI GTMKAC 2 cut(s) 362, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.