Rh4BG020100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0017001
Physical Location & Seq
Forward (+)
3124158 .. 3124496
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG020100.1

Sequence Viewer

Length: 339 bp
ATGCCGATGGTAGATTGGCTTTCGTGGCTTTCGTCGGCGAATGCAGAACAAAAGAGGCCTTGTGATGGAGCCAACTTGGATTATGACCATCAACCAGAGCAGCAGGAGCAACCAATTCCTTCAAAACAACACTGCACTGAGGAGCAACCATCAATGCCTCCCTTCCCCGATCACTTTGCATCTTCATCTGCATCCACCTGTGATATGTGGTGGAGTCCCCTGGCTGAAATTTTCCAGACTTCTAATTGGCAAGCAAATCTTGATCCTCTTCCCAATTCACAGTCGACTCTGGCGAATCTGCAGTCTACCTCACCATCAACTCCAGAGTTCCAACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.66

Weight (kDa)

4.26

Isoelectric Point (pI)

91.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 284, 305
AclWI GGATC 1 cut(s) 257
AcsI RAATTY 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 65
AgsI TTSAA 1 cut(s) 123
AjnI CCWGG 1 cut(s) 219
AlwI GGATC 1 cut(s) 257
AoxI GGCC 1 cut(s) 56
ApeKI GCWGC 1 cut(s) 100
ApoI RAATTY 1 cut(s) 228
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AsuHPI GGTGA 1 cut(s) 303
BbvI GCAGC 1 cut(s) 112
BccI CCATC 4 cut(s) 59, 96, 157, 322
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BciT130I CCWGG 1 cut(s) 221
BfmI CTRYAG 1 cut(s) 299
BisI GCNGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 102
Bme1390I CCNGG 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 221
BmsI GCATC 2 cut(s) 188, 200
BpmI CTGGAG 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 219
Bsc4I CCNNNNNNNGG 1 cut(s) 65
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 1 cut(s) 191
BseLI CCNNNNNNNGG 1 cut(s) 65
BseMII CTCAG 1 cut(s) 129
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 112
BsgI GTGCAG 1 cut(s) 118
BshFI GGCC 1 cut(s) 58
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 201
BsmI GAATGC 1 cut(s) 46
BsnI GGCC 1 cut(s) 58
Bsp143I GATC 2 cut(s) 169, 262
BspANI GGCC 1 cut(s) 58
BspCNI CTCAG 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 70
BspMAI CTGCAG 1 cut(s) 303
BspPI GGATC 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 2 cut(s) 169, 262
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 282
Bst6I CTCTTC 1 cut(s) 273
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 1 cut(s) 138
BstF5I GGATG 1 cut(s) 191
BstKTI GATC 2 cut(s) 172, 265
BstMBI GATC 2 cut(s) 169, 262
BstMWI GCNNNNNNNGC 2 cut(s) 25, 106
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 219
BstSFI CTRYAG 1 cut(s) 299
BstV1I GCAGC 1 cut(s) 112
BsuRI GGCC 1 cut(s) 58
BtsCI GGATG 1 cut(s) 191
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 2 cut(s) 130, 135
Cac8I GCNNGC 1 cut(s) 252
CviJI RGCY 5 cut(s) 19, 28, 58, 71, 224
CviKI_1 RGCY 5 cut(s) 19, 28, 58, 71, 224
DdeI CTNAG 1 cut(s) 138
DpnI GATC 2 cut(s) 171, 264
DpnII GATC 2 cut(s) 169, 262
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Eco147I AGGCCT 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 219
FaiI YATR 2 cut(s) 84, 206
FalI AAGNNNNNCTT 2 cut(s) 243, 275
FaqI GGGAC 1 cut(s) 201
FblI GTMKAC 2 cut(s) 284, 305
Fnu4HI GCNGC 1 cut(s) 101
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 1 cut(s) 101
GluI GCNGC 1 cut(s) 101
GsuI CTGGAG 1 cut(s) 306
HaeIII GGCC 1 cut(s) 58
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HinfI GANTC 3 cut(s) 214, 286, 295
HphI GGTGA 1 cut(s) 303
Hpy166II GTNNAC 2 cut(s) 285, 306
Hpy188III TCNNGA 3 cut(s) 235, 260, 323
Hpy8I GTNNAC 2 cut(s) 285, 306
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 129, 172
HpyCH4III ACNGT 1 cut(s) 282
HpyCH4V TGCA 5 cut(s) 44, 135, 179, 191, 301
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 106
HpyF3I CTNAG 1 cut(s) 138
Kzo9I GATC 2 cut(s) 169, 262
LmnI GCTCC 3 cut(s) 68, 106, 142
LpnPI CCDG 7 cut(s) 89, 108, 206, 211, 233, 248, 275
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 2 cut(s) 188, 200
MalI GATC 2 cut(s) 171, 264
MboI GATC 2 cut(s) 169, 262
MboII GAAGA 2 cut(s) 174, 260
MluCI AATT 4 cut(s) 114, 228, 244, 274
MlyI GAGTC 2 cut(s) 223, 280
MnlI CCTC 5 cut(s) 48, 133, 168, 276, 319
MspR9I CCNGG 1 cut(s) 221
Mva1269I GAATGC 1 cut(s) 46
MvaI CCWGG 1 cut(s) 221
MwoI GCNNNNNNNGC 2 cut(s) 25, 106
NdeII GATC 2 cut(s) 169, 262
NlaIV GGNNCC 1 cut(s) 70
PceI AGGCCT 1 cut(s) 58
PcsI WCGNNNNNNNCGW 2 cut(s) 29, 290
PctI GAATGC 1 cut(s) 46
PfeI GAWTC 1 cut(s) 295
PkrI GCNGC 1 cut(s) 102
PleI GAGTC 2 cut(s) 222, 280
PpsI GAGTC 2 cut(s) 222, 280
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 1 cut(s) 70
PstI CTGCAG 1 cut(s) 303
SalI GTCGAC 1 cut(s) 283
SatI GCNGC 1 cut(s) 101
Sau3AI GATC 2 cut(s) 169, 262
SchI GAGTC 2 cut(s) 223, 280
ScrFI CCNGG 1 cut(s) 221
SetI ASST 2 cut(s) 200, 311
SfaNI GCATC 2 cut(s) 188, 200
SfcI CTRYAG 1 cut(s) 299
Sse9I AATT 4 cut(s) 114, 228, 244, 274
SseBI AGGCCT 1 cut(s) 58
StuI AGGCCT 1 cut(s) 58
StyD4I CCNGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 282
TaqI TCGA 1 cut(s) 284
TasI AATT 4 cut(s) 114, 228, 244, 274
TfiI GAWTC 1 cut(s) 295
TscAI CASTG 2 cut(s) 137, 142
TseI GCWGC 1 cut(s) 100
TspDTI ATGAA 1 cut(s) 174
TspRI CASTG 2 cut(s) 137, 142
XapI RAATTY 1 cut(s) 228
XmiI GTMKAC 2 cut(s) 284, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.