Rh4AG027100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0017001
Physical Location & Seq
Forward (+)
5181411 .. 5181818
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG027100.1

Sequence Viewer

Length: 408 bp
ATGGCTATCTCCCCAGTCCCCATGTTCCCTGACCTGCATAGCTCCCGTCACTCAGCCACTTCCATCGATGAGAGTGGCATGCCGATGGTAGATTGGCTTTCGTCGGCGAATGCAGAACAAAAGAGGCCTTGTAATGGAGCCAACGAGGATTATGACCATCAACAACAGCAGCAGGAGCAACCAATTCCTTCAAAACAACACTGCACTGAGGAGCAACCATCAATGCCTCCCTTCCCCGATCACTTTGCATCTTCATCTGCATCCACCTGTGATATGTGGTGGAGTCCCCTGGCTCAAATCTTCCAGACTTCTAATTGGCAAGCAAATCTTGATCCTCTTCCCAATTCACAGTCGACTATGGCGAATCTGCAGTCTACCTCACCATCAACTCCAGAGTTCCAACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.09

Weight (kDa)

4.54

Isoelectric Point (pI)

88.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 42
AccI GTMKAC 2 cut(s) 353, 374
AclWI GGATC 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 1 cut(s) 192
AjnI CCWGG 1 cut(s) 288
AluBI AGCT 1 cut(s) 42
AluI AGCT 1 cut(s) 42
AlwI GGATC 1 cut(s) 326
AoxI GGCC 1 cut(s) 125
ApeKI GCWGC 1 cut(s) 169
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AsuHPI GGTGA 1 cut(s) 372
BbvI GCAGC 1 cut(s) 181
BccI CCATC 5 cut(s) 71, 79, 165, 226, 391
BcgI CGANNNNNNTGC 2 cut(s) 227, 261
BciT130I CCWGG 1 cut(s) 290
BfmI CTRYAG 1 cut(s) 368
BfuAI ACCTGC 1 cut(s) 42
BisI GCNGC 1 cut(s) 170
BlsI GCNGC 1 cut(s) 171
Bme1390I CCNGG 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 290
BmrI ACTGGG 1 cut(s) 8
BmsI GCATC 2 cut(s) 257, 269
BmuI ACTGGG 1 cut(s) 8
BpmI CTGGAG 1 cut(s) 375
Bsa29I ATCGAT 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 288
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 14
BseBI CCWGG 1 cut(s) 290
BseCI ATCGAT 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 1 cut(s) 260
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMII CTCAG 2 cut(s) 66, 198
BseNI ACTGG 1 cut(s) 14
BseRI GAGGAG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 187
BshFI GGCC 1 cut(s) 127
BshVI ATCGAT 1 cut(s) 66
BslFI GGGAC 2 cut(s) 2, 270
BslI CCNNNNNNNGG 1 cut(s) 134
BsmFI GGGAC 2 cut(s) 2, 270
BsmI GAATGC 1 cut(s) 115
BsnI GGCC 1 cut(s) 127
Bsp143I GATC 2 cut(s) 238, 331
BspANI GGCC 1 cut(s) 127
BspCNI CTCAG 2 cut(s) 65, 199
BspDI ATCGAT 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 139
BspMAI CTGCAG 1 cut(s) 372
BspMI ACCTGC 1 cut(s) 42
BspPI GGATC 1 cut(s) 326
BsrI ACTGG 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 2 cut(s) 238, 331
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 1 cut(s) 351
Bst6I CTCTTC 1 cut(s) 342
BstC8I GCNNGC 2 cut(s) 80, 321
BstDEI CTNAG 2 cut(s) 52, 207
BstF5I GGATG 1 cut(s) 260
BstKTI GATC 2 cut(s) 241, 334
BstMBI GATC 2 cut(s) 238, 331
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstNI CCWGG 1 cut(s) 290
BstNSI RCATGY 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 288
BstSFI CTRYAG 1 cut(s) 368
BstV1I GCAGC 1 cut(s) 181
Bsu15I ATCGAT 1 cut(s) 66
BsuRI GGCC 1 cut(s) 127
BsuTUI ATCGAT 1 cut(s) 66
BtsCI GGATG 1 cut(s) 260
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 2 cut(s) 199, 204
BveI ACCTGC 1 cut(s) 42
Cac8I GCNNGC 2 cut(s) 80, 321
ClaI ATCGAT 1 cut(s) 66
CviAII CATG 2 cut(s) 22, 79
CviJI RGCY 7 cut(s) 5, 42, 56, 97, 127, 140, 293
CviKI_1 RGCY 7 cut(s) 5, 42, 56, 97, 127, 140, 293
DdeI CTNAG 2 cut(s) 52, 207
DpnI GATC 2 cut(s) 240, 333
DpnII GATC 2 cut(s) 238, 331
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
Eco147I AGGCCT 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 288
FaeI CATG 2 cut(s) 25, 82
FaiI YATR 6 cut(s) 23, 39, 80, 153, 275, 359
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 2 cut(s) 2, 270
FatI CATG 2 cut(s) 21, 78
FblI GTMKAC 2 cut(s) 353, 374
Fnu4HI GCNGC 1 cut(s) 170
FokI GGATG 1 cut(s) 247
Fsp4HI GCNGC 1 cut(s) 170
GluI GCNGC 1 cut(s) 170
GsuI CTGGAG 1 cut(s) 375
HaeIII GGCC 1 cut(s) 127
Hin1II CATG 2 cut(s) 25, 82
HincII GTYRAC 1 cut(s) 354
HindII GTYRAC 1 cut(s) 354
HinfI GANTC 2 cut(s) 283, 364
HphI GGTGA 1 cut(s) 372
Hpy166II GTNNAC 2 cut(s) 354, 375
Hpy188III TCNNGA 3 cut(s) 304, 329, 392
Hpy8I GTNNAC 2 cut(s) 354, 375
Hpy99I CGWCG 1 cut(s) 106
HpyAV CCTTC 2 cut(s) 198, 241
HpyCH4III ACNGT 1 cut(s) 351
HpyCH4V TGCA 6 cut(s) 37, 113, 204, 248, 260, 370
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 2 cut(s) 52, 207
Hsp92II CATG 2 cut(s) 25, 82
Kzo9I GATC 2 cut(s) 238, 331
LmnI GCTCC 4 cut(s) 47, 137, 175, 211
LpnPI CCDG 8 cut(s) 27, 42, 47, 158, 275, 280, 302, 317
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 2 cut(s) 257, 269
MaeIII GTNAC 1 cut(s) 47
MalI GATC 2 cut(s) 240, 333
MboI GATC 2 cut(s) 238, 331
MboII GAAGA 3 cut(s) 243, 292, 329
MluCI AATT 3 cut(s) 183, 313, 343
MlyI GAGTC 1 cut(s) 292
MnlI CCTC 6 cut(s) 117, 139, 202, 237, 345, 388
MslI CAYNNNNRTG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 290
Mva1269I GAATGC 1 cut(s) 115
MvaI CCWGG 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 175
NdeII GATC 2 cut(s) 238, 331
NlaIII CATG 2 cut(s) 25, 82
NlaIV GGNNCC 1 cut(s) 139
NmuCI GTSAC 1 cut(s) 47
NspI RCATGY 1 cut(s) 82
PaeI GCATGC 1 cut(s) 82
PceI AGGCCT 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 359
PctI GAATGC 1 cut(s) 115
PfeI GAWTC 1 cut(s) 364
PkrI GCNGC 1 cut(s) 171
PleI GAGTC 1 cut(s) 291
PpsI GAGTC 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 288
PspGI CCWGG 1 cut(s) 288
PspN4I GGNNCC 1 cut(s) 139
PstI CTGCAG 1 cut(s) 372
RseI CAYNNNNRTG 1 cut(s) 83
SalI GTCGAC 1 cut(s) 352
SatI GCNGC 1 cut(s) 170
Sau3AI GATC 2 cut(s) 238, 331
SchI GAGTC 1 cut(s) 292
ScrFI CCNGG 1 cut(s) 290
SetI ASST 4 cut(s) 36, 44, 269, 380
SfaNI GCATC 2 cut(s) 257, 269
SfcI CTRYAG 1 cut(s) 368
SmiMI CAYNNNNRTG 1 cut(s) 83
SphI GCATGC 1 cut(s) 82
Sse9I AATT 3 cut(s) 183, 313, 343
SseBI AGGCCT 1 cut(s) 127
StuI AGGCCT 1 cut(s) 127
StyD4I CCNGG 1 cut(s) 288
TaaI ACNGT 1 cut(s) 351
TaqI TCGA 2 cut(s) 66, 353
TasI AATT 3 cut(s) 183, 313, 343
TfiI GAWTC 1 cut(s) 364
TscAI CASTG 2 cut(s) 206, 211
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 1 cut(s) 243
TspRI CASTG 2 cut(s) 206, 211
XceI RCATGY 1 cut(s) 82
XmiI GTMKAC 2 cut(s) 353, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.