Rh4DG020700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0017001
Physical Location & Seq
Forward (+)
3236869 .. 3237393
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG020700.1

Sequence Viewer

Length: 525 bp
ATGGCTTCCTTAACTCTGAAACGACACCGCAGCGCGGAAGAACCATCACCAACACCAGTGAATCCTCCGAAACGACAACGCACTGCCGCCGGGGGGCAAGCACCGGTGGTCCACTTTGCATATGAAATGGCTATCTCCCCAGTCCCCATGTTCCCTGACCTGCATAGCTCCCATCACTCAACCACTTCCATCGATGAGAGTGGCATGCCGATGGTAGATTGGCTTTCGTCGGCGAATGCAGAACAAAAGAGGCCTTGTAATGGAGCCAACGACCATCAACAAGAGCAGCAGGAGCAACCAATTCCTTCAAAACGACACTGCACTGAGGAGCAACCATCATTGCCTCCCTTCCCCGATCACTTTGCGTCTTCATCTGCATCCACCTGTGATATGTGGTGGAGTCCCCTGGCTGAAATTTTCCAGACTTCTAATTGGCAAGCAAATCTTGATCCTCTTCCCAATTCACAGTCGACTCTGGCGAATCTGCAGTCTACCTCACCATCAACTCCAGAGTTCCAACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.25

Weight (kDa)

5.52

Isoelectric Point (pI)

85.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 168
AccI GTMKAC 2 cut(s) 470, 491
AccII CGCG 1 cut(s) 35
AciI CCGC 3 cut(s) 28, 35, 87
AclWI GGATC 1 cut(s) 443
AcsI RAATTY 1 cut(s) 414
AfiI CCNNNNNNNGG 3 cut(s) 34, 93, 260
AgeI ACCGGT 1 cut(s) 103
AgsI TTSAA 1 cut(s) 309
AjnI CCWGG 1 cut(s) 405
AluBI AGCT 1 cut(s) 168
AluI AGCT 1 cut(s) 168
AlwI GGATC 1 cut(s) 443
AoxI GGCC 1 cut(s) 251
ApeKI GCWGC 2 cut(s) 30, 286
ApoI RAATTY 1 cut(s) 414
ArsI GACNNNNNNTTYG 2 cut(s) 473, 505
AsiGI ACCGGT 1 cut(s) 103
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 109
AsuC2I CCSGG 1 cut(s) 91
AsuHPI GGTGA 2 cut(s) 39, 489
AvaII GGWCC 1 cut(s) 109
BbsI GAAGAC 1 cut(s) 360
BbvI GCAGC 2 cut(s) 42, 298
BccI CCATC 7 cut(s) 52, 180, 197, 205, 282, 343, 508
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 1 cut(s) 407
BcnI CCSGG 1 cut(s) 91
BfmI CTRYAG 1 cut(s) 485
BfuAI ACCTGC 1 cut(s) 168
BisI GCNGC 3 cut(s) 31, 87, 287
BlsI GCNGC 3 cut(s) 32, 88, 288
Bme1390I CCNGG 2 cut(s) 91, 407
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 2 cut(s) 91, 407
BmrI ACTGGG 1 cut(s) 134
BmsI GCATC 1 cut(s) 386
BmuI ACTGGG 1 cut(s) 134
BpiI GAAGAC 1 cut(s) 360
BpmI CTGGAG 1 cut(s) 492
BpuMI CCSGG 1 cut(s) 91
Bsa29I ATCGAT 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 90, 405
BsaWI WCCGGW 1 cut(s) 103
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 93, 260
Bse118I RCCGGY 1 cut(s) 103
Bse1I ACTGG 2 cut(s) 56, 140
Bse3DI GCAATG 1 cut(s) 338
BseBI CCWGG 1 cut(s) 407
BseCI ATCGAT 1 cut(s) 192
BseDI CCNNGG 2 cut(s) 90, 405
BseGI GGATG 1 cut(s) 377
BseLI CCNNNNNNNGG 3 cut(s) 34, 93, 260
BseMI GCAATG 1 cut(s) 338
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 2 cut(s) 56, 140
BseRI GAGGAG 1 cut(s) 341
BseXI GCAGC 2 cut(s) 42, 298
BsgI GTGCAG 1 cut(s) 304
Bsh1236I CGCG 1 cut(s) 35
BshFI GGCC 1 cut(s) 253
BshTI ACCGGT 1 cut(s) 103
BshVI ATCGAT 1 cut(s) 192
BsiSI CCGG 2 cut(s) 90, 104
BslFI GGGAC 2 cut(s) 128, 387
BslI CCNNNNNNNGG 3 cut(s) 34, 93, 260
BsmFI GGGAC 2 cut(s) 128, 387
BsmI GAATGC 1 cut(s) 241
BsnI GGCC 1 cut(s) 253
Bsp143I GATC 2 cut(s) 355, 448
BspACI CCGC 3 cut(s) 28, 35, 87
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 1 cut(s) 316
BspDI ATCGAT 1 cut(s) 192
BspFNI CGCG 1 cut(s) 35
BspLI GGNNCC 1 cut(s) 265
BspMAI CTGCAG 1 cut(s) 489
BspMI ACCTGC 1 cut(s) 168
BspPI GGATC 1 cut(s) 443
BsrDI GCAATG 1 cut(s) 338
BsrFI RCCGGY 1 cut(s) 103
BsrI ACTGG 2 cut(s) 56, 140
BssAI RCCGGY 1 cut(s) 103
BssECI CCNNGG 2 cut(s) 90, 405
BssMI GATC 2 cut(s) 355, 448
Bst2UI CCWGG 1 cut(s) 407
Bst4CI ACNGT 1 cut(s) 468
Bst6I CTCTTC 1 cut(s) 459
BstC8I GCNNGC 3 cut(s) 99, 206, 438
BstDEI CTNAG 1 cut(s) 324
BstF5I GGATG 1 cut(s) 377
BstFNI CGCG 1 cut(s) 35
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 2 cut(s) 358, 451
BstMBI GATC 2 cut(s) 355, 448
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstNI CCWGG 1 cut(s) 407
BstNSI RCATGY 1 cut(s) 208
BstSCI CCNGG 2 cut(s) 89, 405
BstSFI CTRYAG 1 cut(s) 485
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 2 cut(s) 42, 298
BstV2I GAAGAC 1 cut(s) 360
Bsu15I ATCGAT 1 cut(s) 192
BsuRI GGCC 1 cut(s) 253
BsuTUI ATCGAT 1 cut(s) 192
BtsCI GGATG 1 cut(s) 377
BtsI GCAGTG 2 cut(s) 81, 316
BtsIMutI CAGTG 4 cut(s) 63, 81, 316, 321
BveI ACCTGC 1 cut(s) 168
Cac8I GCNNGC 3 cut(s) 99, 206, 438
CfoI GCGC 1 cut(s) 35
Cfr10I RCCGGY 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 109
ClaI ATCGAT 1 cut(s) 192
CseI GACGC 1 cut(s) 354
CspAI ACCGGT 1 cut(s) 103
CviAII CATG 2 cut(s) 148, 205
CviJI RGCY 7 cut(s) 5, 131, 168, 223, 253, 266, 410
CviKI_1 RGCY 7 cut(s) 5, 131, 168, 223, 253, 266, 410
DdeI CTNAG 1 cut(s) 324
DpnI GATC 2 cut(s) 357, 450
DpnII GATC 2 cut(s) 355, 448
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
Eco147I AGGCCT 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 405
FaeI CATG 2 cut(s) 151, 208
FaiI YATR 6 cut(s) 121, 123, 149, 165, 206, 392
FalI AAGNNNNNCTT 2 cut(s) 429, 461
FaqI GGGAC 2 cut(s) 128, 387
FatI CATG 2 cut(s) 147, 204
FauNDI CATATG 1 cut(s) 121
FblI GTMKAC 2 cut(s) 470, 491
Fnu4HI GCNGC 3 cut(s) 31, 87, 287
FokI GGATG 1 cut(s) 364
Fsp4HI GCNGC 3 cut(s) 31, 87, 287
GlaI GCGC 1 cut(s) 34
GluI GCNGC 3 cut(s) 31, 87, 287
GsuI CTGGAG 1 cut(s) 492
HaeIII GGCC 1 cut(s) 253
HapII CCGG 2 cut(s) 90, 104
HgaI GACGC 1 cut(s) 354
HhaI GCGC 1 cut(s) 35
Hin1II CATG 2 cut(s) 151, 208
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HinfI GANTC 4 cut(s) 61, 400, 472, 481
HpaII CCGG 2 cut(s) 90, 104
HphI GGTGA 2 cut(s) 39, 489
Hpy166II GTNNAC 3 cut(s) 112, 471, 492
Hpy188I TCNGA 2 cut(s) 18, 69
Hpy188III TCNNGA 3 cut(s) 421, 446, 509
Hpy8I GTNNAC 3 cut(s) 112, 471, 492
Hpy99I CGWCG 1 cut(s) 232
HpyAV CCTTC 2 cut(s) 315, 358
HpyCH4III ACNGT 1 cut(s) 468
HpyCH4V TGCA 6 cut(s) 119, 163, 239, 321, 377, 487
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
HpyF3I CTNAG 1 cut(s) 324
Hsp92II CATG 2 cut(s) 151, 208
HspAI GCGC 1 cut(s) 33
Kzo9I GATC 2 cut(s) 355, 448
LmnI GCTCC 4 cut(s) 173, 263, 292, 328
Lsp1109I GCAGC 2 cut(s) 42, 298
LweI GCATC 1 cut(s) 386
MalI GATC 2 cut(s) 357, 450
MboI GATC 2 cut(s) 355, 448
MboII GAAGA 3 cut(s) 50, 360, 446
MluCI AATT 4 cut(s) 300, 414, 430, 460
MlyI GAGTC 2 cut(s) 409, 466
MnlI CCTC 6 cut(s) 75, 243, 319, 354, 462, 505
MseI TTAA 1 cut(s) 11
MslI CAYNNNNRTG 1 cut(s) 209
MspI CCGG 2 cut(s) 90, 104
MspR9I CCNGG 2 cut(s) 91, 407
Mva1269I GAATGC 1 cut(s) 241
MvaI CCWGG 1 cut(s) 407
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 292
NciI CCSGG 1 cut(s) 91
NdeI CATATG 1 cut(s) 121
NdeII GATC 2 cut(s) 355, 448
NlaIII CATG 2 cut(s) 151, 208
NlaIV GGNNCC 1 cut(s) 265
NspI RCATGY 1 cut(s) 208
PaeI GCATGC 1 cut(s) 208
PceI AGGCCT 1 cut(s) 253
PcsI WCGNNNNNNNCGW 1 cut(s) 476
PctI GAATGC 1 cut(s) 241
PfeI GAWTC 2 cut(s) 61, 481
PinAI ACCGGT 1 cut(s) 103
PkrI GCNGC 3 cut(s) 32, 88, 288
PleI GAGTC 2 cut(s) 408, 466
PpsI GAGTC 2 cut(s) 408, 466
Psp6I CCWGG 1 cut(s) 405
PspGI CCWGG 1 cut(s) 405
PspN4I GGNNCC 1 cut(s) 265
PspPI GGNCC 1 cut(s) 109
PstI CTGCAG 1 cut(s) 489
RseI CAYNNNNRTG 1 cut(s) 209
SalI GTCGAC 1 cut(s) 469
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 3 cut(s) 31, 87, 287
Sau3AI GATC 2 cut(s) 355, 448
Sau96I GGNCC 1 cut(s) 109
SchI GAGTC 2 cut(s) 409, 466
ScrFI CCNGG 2 cut(s) 91, 407
SetI ASST 4 cut(s) 162, 170, 386, 497
SfaNI GCATC 1 cut(s) 386
SfcI CTRYAG 1 cut(s) 485
SgrAI CRCCGGYG 1 cut(s) 103
SinI GGWCC 1 cut(s) 109
SmiMI CAYNNNNRTG 1 cut(s) 209
SphI GCATGC 1 cut(s) 208
Sse9I AATT 4 cut(s) 300, 414, 430, 460
SseBI AGGCCT 1 cut(s) 253
SsiI CCGC 3 cut(s) 28, 35, 87
StuI AGGCCT 1 cut(s) 253
StyD4I CCNGG 2 cut(s) 89, 405
TaaI ACNGT 1 cut(s) 468
TaqI TCGA 2 cut(s) 192, 470
TasI AATT 4 cut(s) 300, 414, 430, 460
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 2 cut(s) 61, 481
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 4 cut(s) 63, 88, 323, 328
TseI GCWGC 2 cut(s) 30, 286
TspDTI ATGAA 2 cut(s) 138, 360
TspRI CASTG 4 cut(s) 63, 88, 323, 328
VpaK11BI GGWCC 1 cut(s) 109
XapI RAATTY 1 cut(s) 414
XceI RCATGY 1 cut(s) 208
XmiI GTMKAC 2 cut(s) 470, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.