Rh4CG211300

Lactoylglutathione lyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0012372
Physical Location & Seq
Forward (+)
44097060 .. 44099595
2536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG211300.1

Sequence Viewer

Length: 489 bp
ATGGCTGCAGCTCCAGTAGCACAAGGAGTGAGTCTGAACCACATTTCCAGAGAATCCTCGGACATTAGGCGTCTCGCCGAGTTCTACAAAGAGACATTTGGATTCGAGGAGATAGAAAGCCCAAACTTTGGGGAATTCAAGGTGATATGGCTGAATTTACCTTTAGCTTTTTCTATGCACCTTATCGAGAGGAACCCAACTTACCAGCTCCCTGAAGGACCCTGGAGCGCCACGTCACCTGTTGCCGACCCAAGCCACCTTCCCAGGGGTCACCACATCTGCTTCTCTGTCTCCAATTTCGAATCTTTTGTGCAGACACTCAAGGTATGCATCCATTTTCAGATCACCCTTTTGGATTTTGGATGGTTTGGAATTCCATTTGATGTTTATTACCGTTTGATTTTGATTGAATTTGGCGTAAAAAAGAGTTATCATTTGTCTACTTTGGTTGTTGAAATTTCTGTTCTGGTAAAAATCTTGATGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyoxalase Glyoxalase_4

Protein Analysis

162

Amino Acids

18.57

Weight (kDa)

5.94

Isoelectric Point (pI)

58.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012372)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32090 AT2G32090
fragaria_vesca FvH4_4g16340 FvH4_4g16340
malus_domestica MD13G1194100.v1.1
prunus_persica Prupe.1G014900_v2.0.a1 Prupe.1G014900_v2.0.a1
pyrus_communis pycom13g16640
rosa_chinensis RchiOBHm_Chr4g0416051
rosa_laevigata RLG00000008022
rosa_multiflora Rmu_sc0007573.1_g000005 Rmu_sc0007573.1_g000007
rosa_roxburghii Rroxscaffold_5G00359880
rosa_rugosa Rorug04G0137700
rosa_samantha Rh4AG200000 Rh4BG197600 Rh4CG211300 Rh4DG197800
rosa_wichuraiana Rw4G016980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 128
AccI GTMKAC 1 cut(s) 440
AcsI RAATTY 5 cut(s) 134, 154, 372, 410, 456
AcuI CTGAAG 1 cut(s) 234
AcyI GRCGYC 1 cut(s) 70
AfaI GTAC 1 cut(s) 485
AfiI CCNNNNNNNGG 2 cut(s) 128, 265
AgsI TTSAA 3 cut(s) 139, 410, 455
AjiI CACGTC 1 cut(s) 234
AjnI CCWGG 2 cut(s) 221, 263
AloI GAACNNNNNNTCC 2 cut(s) 29, 61
AluBI AGCT 3 cut(s) 11, 167, 208
AluI AGCT 3 cut(s) 11, 167, 208
Alw26I GTCTC 3 cut(s) 77, 86, 295
ApeKI GCWGC 2 cut(s) 5, 8
ApoI RAATTY 5 cut(s) 134, 154, 372, 410, 456
AspLEI GCGC 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 4 cut(s) 154, 228, 263, 337
AsuII TTCGAA 1 cut(s) 300
AvaII GGWCC 1 cut(s) 218
BbvI GCAGC 1 cut(s) 20
BccI CCATC 1 cut(s) 357
BciT130I CCWGG 2 cut(s) 223, 265
BcoDI GTCTC 3 cut(s) 77, 86, 295
BfaI CTAG 1 cut(s) 487
BfmI CTRYAG 1 cut(s) 6
BfoI RGCGCY 1 cut(s) 231
BisI GCNGC 2 cut(s) 6, 9
BlsI GCNGC 2 cut(s) 7, 10
Bme1390I CCNGG 2 cut(s) 223, 265
Bme18I GGWCC 1 cut(s) 218
BmgBI CACGTC 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 2 cut(s) 194, 220
BmrFI CCNGG 2 cut(s) 223, 265
BmsI GCATC 1 cut(s) 339
BpmI CTGGAG 1 cut(s) 244
Bpu14I TTCGAA 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 305
BsaHI GRCGYC 1 cut(s) 70
BsaJI CCNNGG 4 cut(s) 57, 221, 263, 264
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 265
Bse1I ACTGG 1 cut(s) 14
BseBI CCWGG 2 cut(s) 223, 265
BseDI CCNNGG 4 cut(s) 57, 221, 263, 264
BseGI GGATG 2 cut(s) 330, 368
BseLI CCNNNNNNNGG 2 cut(s) 128, 265
BseNI ACTGG 1 cut(s) 14
BseRI GAGGAG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 20
BsgI GTGCAG 1 cut(s) 332
BslI CCNNNNNNNGG 2 cut(s) 128, 265
BsmAI GTCTC 3 cut(s) 77, 86, 295
BsmBI CGTCTC 1 cut(s) 77
Bsp119I TTCGAA 1 cut(s) 300
Bsp143I GATC 1 cut(s) 342
BspLI GGNNCC 2 cut(s) 194, 220
BspMAI CTGCAG 1 cut(s) 10
BspT104I TTCGAA 1 cut(s) 300
BsrI ACTGG 1 cut(s) 14
BssECI CCNNGG 4 cut(s) 57, 221, 263, 264
BssMI GATC 1 cut(s) 342
BssNI GRCGYC 1 cut(s) 70
Bst2UI CCWGG 2 cut(s) 223, 265
Bst4CI ACNGT 1 cut(s) 395
BstACI GRCGYC 1 cut(s) 70
BstBI TTCGAA 1 cut(s) 300
BstEII GGTNACC 1 cut(s) 269
BstF5I GGATG 2 cut(s) 330, 368
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 1 cut(s) 230
BstKTI GATC 1 cut(s) 345
BstMAI GTCTC 3 cut(s) 77, 86, 295
BstMBI GATC 1 cut(s) 342
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 2 cut(s) 223, 265
BstPI GGTNACC 1 cut(s) 269
BstSCI CCNGG 2 cut(s) 221, 263
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 1 cut(s) 20
BtrI CACGTC 1 cut(s) 234
BtsCI GGATG 2 cut(s) 330, 368
CfoI GCGC 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 218
CseI GACGC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 484
CviJI RGCY 7 cut(s) 5, 11, 120, 151, 167, 208, 255
CviKI_1 RGCY 7 cut(s) 5, 11, 120, 151, 167, 208, 255
CviQI GTAC 1 cut(s) 484
DpnI GATC 1 cut(s) 344
DpnII GATC 1 cut(s) 342
Eco47I GGWCC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 234
Eco91I GGTNACC 1 cut(s) 269
EcoO109I RGGNCCY 1 cut(s) 218
EcoO65I GGTNACC 1 cut(s) 269
EcoRI GAATTC 2 cut(s) 134, 372
EcoRII CCWGG 2 cut(s) 221, 263
EcoT22I ATGCAT 1 cut(s) 332
Esp3I CGTCTC 1 cut(s) 77
FaiI YATR 3 cut(s) 148, 176, 328
FblI GTMKAC 1 cut(s) 440
Fnu4HI GCNGC 2 cut(s) 6, 9
FokI GGATG 2 cut(s) 317, 375
Fsp4HI GCNGC 2 cut(s) 6, 9
FspBI CTAG 1 cut(s) 487
GlaI GCGC 1 cut(s) 229
GluI GCNGC 2 cut(s) 6, 9
GsuI CTGGAG 1 cut(s) 244
HaeII RGCGCY 1 cut(s) 231
HgaI GACGC 1 cut(s) 59
HhaI GCGC 1 cut(s) 230
Hin1I GRCGYC 1 cut(s) 70
Hin6I GCGC 1 cut(s) 228
HinP1I GCGC 1 cut(s) 228
HinfI GANTC 4 cut(s) 31, 53, 102, 302
HphI GGTGA 4 cut(s) 154, 228, 263, 337
Hpy166II GTNNAC 1 cut(s) 441
Hpy188I TCNGA 3 cut(s) 36, 61, 342
Hpy188III TCNNGA 3 cut(s) 48, 187, 478
Hpy8I GTNNAC 1 cut(s) 441
HpyAV CCTTC 2 cut(s) 209, 269
HpyCH4III ACNGT 1 cut(s) 395
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 4 cut(s) 8, 178, 313, 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpySE526I ACGT 1 cut(s) 233
Hsp92I GRCGYC 1 cut(s) 70
HspAI GCGC 1 cut(s) 228
Kzo9I GATC 1 cut(s) 342
LmnI GCTCC 3 cut(s) 16, 213, 225
Lsp1109I GCAGC 1 cut(s) 20
LweI GCATC 1 cut(s) 339
MaeI CTAG 1 cut(s) 487
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 2 cut(s) 234, 269
MalI GATC 1 cut(s) 344
MboI GATC 1 cut(s) 342
MluCI AATT 6 cut(s) 134, 154, 295, 372, 410, 456
MlyI GAGTC 1 cut(s) 40
MnlI CCTC 3 cut(s) 67, 100, 183
Mph1103I ATGCAT 1 cut(s) 332
MspR9I CCNGG 2 cut(s) 223, 265
MvaI CCWGG 2 cut(s) 223, 265
MwoI GCNNNNNNNGC 1 cut(s) 17
NdeII GATC 1 cut(s) 342
NlaIV GGNNCC 2 cut(s) 194, 220
NmeAIII GCCGAG 1 cut(s) 103
NmuCI GTSAC 2 cut(s) 234, 269
NsiI ATGCAT 1 cut(s) 332
NspV TTCGAA 1 cut(s) 300
PasI CCCWGGG 1 cut(s) 264
PfeI GAWTC 3 cut(s) 53, 102, 302
PflMI CCANNNNNTGG 1 cut(s) 128
PkrI GCNGC 2 cut(s) 7, 10
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
PpuMI RGGWCCY 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 218
Psp6I CCWGG 2 cut(s) 221, 263
PspEI GGTNACC 1 cut(s) 269
PspGI CCWGG 2 cut(s) 221, 263
PspN4I GGNNCC 2 cut(s) 194, 220
PspPI GGNCC 1 cut(s) 218
PspPPI RGGWCCY 1 cut(s) 218
PsrI GAACNNNNNNTAC 2 cut(s) 185, 217
PstI CTGCAG 1 cut(s) 10
RsaI GTAC 1 cut(s) 485
RsaNI GTAC 1 cut(s) 484
SatI GCNGC 2 cut(s) 6, 9
Sau3AI GATC 1 cut(s) 342
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 2 cut(s) 223, 265
SfaNI GCATC 1 cut(s) 339
SfcI CTRYAG 1 cut(s) 6
SfuI TTCGAA 1 cut(s) 300
SinI GGWCC 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 6 cut(s) 134, 154, 295, 372, 410, 456
SspMI CTAG 1 cut(s) 487
StyD4I CCNGG 2 cut(s) 221, 263
TaaI ACNGT 1 cut(s) 395
TaiI ACGT 1 cut(s) 236
TaqI TCGA 3 cut(s) 105, 186, 300
TasI AATT 6 cut(s) 134, 154, 295, 372, 410, 456
TatI WGTACW 1 cut(s) 483
TfiI GAWTC 3 cut(s) 53, 102, 302
TseFI GTSAC 2 cut(s) 234, 269
TseI GCWGC 2 cut(s) 5, 8
Tsp45I GTSAC 2 cut(s) 234, 269
Van91I CCANNNNNTGG 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 5 cut(s) 134, 154, 372, 410, 456
XmiI GTMKAC 1 cut(s) 440
XspI CTAG 1 cut(s) 487
Zsp2I ATGCAT 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.