Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0014209

Physical Location & Seq

Genomic Coordinates Forward (+)

59737309 .. 59738607

Gene Structure 1299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG337700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGAAGCTCCGATCGTGGTTCTCCGCCACATGCTCCTCCCACGAATCCACCGTCTCCATCCCCCAACCCCGACCCTCATACCAAAAACGACACGTCGTCTCCGACCCCAGCAGCTCCTCCGATAACCCCAGCAGCTCCTCCAGTACTAGCGACACCTGCAGCACCAGCCTCCATTCCAACCTCTCCCTCCAGACGCTGCCATCTGTCCCCTCCCTTCAGAAGCTCATCTCCCAACTCGACGCCCCAAACCTCTCCGTCTCTCACCTCTGCTTCACCACCCTCACTCCCTCCTCCTCCTCTCTCCCGATCACCTGCCTCGCCGTCCACCACAACCGCCTCTACGCCGCCTCCGGCCACGAAATCAACGTCTACGATCAGGCCGACTTTTCCCACCTCGACTCATTCAACGCTCACGATCCCTCCTCGGGCACCGTGAAGTCCGTCTCGTTTTCCGACGGCAAGGTGTTCACCGCGCACCAGGACTGTAAAATCAAAGTCTGGGAGATAATCCCGGGTAAACGGCACAGACTCCTAACCACCCTCCCCACCGTCAACGACCGTTTGCTTCGTTTTGCGCTCCCCAAGAACTACGTCAGCATACGCCGGCACGTGAAACGCCTCTGGATCCAGCACGCCGACGCCGTTACCGGCATCGCCGTCAACAACGGCCTCGTCTACTCGGTTTCCTGGGACAAGACCTTGAAGATTTGGCGGGACTCCAACCTCCGCTGCGTGGAGTCCGTCAAGGCGCACGAGGACGCCGTGAGCGCGGTGGCGGTGGCGAAGGACGGGACCGTCTACACCGGGTCGGCGGACCGTCGCATCCGGGTCTGGGCGAGACCGCAAGACGAGAAGCGCCACGTGTTGGTGGCGACGCTGGAGAAGCACAAGTCGGCGGTGAACGCTTTGGCTCTAAACGACGACGGATCGGTGCTGTTCTCGGGGGCCTGTGACCGTTCGATCCTGGTGTGGGAGAGAGAGGACAGCGCGAACCACATGGCCGTTACGGGGGCGTTGAGGGGGCATGGTAAGGCGATACTGTGTTTATTCAACGTCGGGGATTTGCTGCTGAGTGGGTCCGCTGATCAGACGGTGAGGATGTGGCGGCGAGGGGAGGATGGCAGTTATTGCTGTTTGGGGGTTTTGGAGGGACACGTGAAACCGGTGAAGGCGCTGGTGGCGGTTACGGGAGAGAGTGGTGGCGCCGTCGTTTCGGTTGTGAGTGGGAGTTTAGATGGAGTGGTGAAGGTGTGGCACGTGTCGGTTTCGGAGGCGATTAAAGAACAGAAGATGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045159 GO:0046777 GO:0051301 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

432

Amino Acids

47.0

Weight (kDa)

8.84

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	102 - 283	2.7e-13	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	210 - 428	7.6e-21	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	210 - 279	7.8e-09	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	211 - 369	4.1e-12	WDHD1 first WD40 domain
NBCH_WD40	PF20426	218 - 280	7.2e-07	Neurobeachin beta propeller domain
Beta-prop_WDR3_2nd	PF25172	219 - 328	5.6e-14	WDR3 second beta-propeller domain
WD40_Prp19	PF24814	220 - 306	7.7e-10	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	222 - 349	9.3e-09	Echinoderm microtubule-associated protein second beta-propeller
WDR55	PF24796	224 - 421	6.6e-11	WDR55
WD40_CDC20-Fz	PF24807	231 - 335	8.7e-11	CDC20/Fizzy WD40 domain
WD40_Gbeta	PF25391	231 - 369	4.1e-10	G protein beta WD-40 repeat protein
Beta-prop_TEP1_2nd	PF25047	243 - 422	2.9e-14	TEP-1 second beta-propeller
Beta-prop_WDR75_1st	PF23869	251 - 330	2.7e-07	WD repeat-containing protein 75 first beta-propeller
Beta-prop_EML	PF23409	253 - 328	2.9e-06	Echinoderm microtubule-associated protein first beta-propeller
WD40_Prp19	PF24814	262 - 346	6.7e-08	Prp19 WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	263 - 372	1.2e-07	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR5	PF25175	268 - 427	1e-22	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	284 - 428	5.4e-09	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	285 - 427	6.3e-17	WDR3 first beta-propeller domain
WD40	PF00400	289 - 324	3.8e-07	WD domain, G-beta repeat
WD40_Prp19	PF24814	297 - 373	2.2e-07	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24530
fragaria_vesca	FvH4_4g25271
malus_domestica	MD13G1105300.v1.1 MD16G1105400.v1.1
prunus_persica	Prupe.1G241300_v2.0.a1
pyrus_communis	pycom13g09130 pycom16g08970
rosa_chinensis	RchiOBHm_Chr4g0432531
rosa_laevigata	RLG00000006834
rosa_multiflora	Rmu_sc0009980.1_g000001
rosa_roxburghii	Rroxscaffold_5G00373980
rosa_rugosa	Rorug04G0260000.1
rosa_samantha	Rh4AG314800 Rh4BG322500 Rh4CG337700 Rh4DG318500
rosa_wichuraiana	Rw4G027370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	164, 320
AasI	GACNNNNNNGTC	1 cut(s)	794
Acc36I	ACCTGC	2 cut(s)	164, 320
AccB1I	GGYRCC	2 cut(s)	428, 1202
AccB7I	CCANNNNNTGG	1 cut(s)	865
AccI	GTMKAC	3 cut(s)	369, 675, 798
AccII	CGCG	3 cut(s)	473, 770, 989
AclWI	GGATC	5 cut(s)	410, 619, 632, 934, 955
AcoI	YGGCCR	2 cut(s)	352, 999
AcuI	CTGAAG	1 cut(s)	200
AcvI	CACGTG	4 cut(s)	610, 862, 1156, 1258
AcyI	GRCGYC	4 cut(s)	240, 639, 759, 1203
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	6 cut(s)	425, 733, 832, 865, 970, 1008
AflIII	ACRYGT	4 cut(s)	91, 861, 1153, 1257
AgeI	ACCGGT	1 cut(s)	1162
AgsI	TTSAA	3 cut(s)	406, 703, 1051
AhdI	GACNNNNNGTC	1 cut(s)	95
AjiI	CACGTC	1 cut(s)	94
AjnI	CCWGG	3 cut(s)	477, 686, 963
AluBI	AGCT	4 cut(s)	7, 114, 135, 223
AluI	AGCT	4 cut(s)	7, 114, 135, 223
Alw26I	GTCTC	5 cut(s)	58, 103, 262, 448, 832
AlwI	GGATC	5 cut(s)	410, 619, 632, 934, 955
AlwNI	CAGNNNCTG	1 cut(s)	196
Ama87I	CYCGRG	3 cut(s)	424, 511, 940
AoxI	GGCC	5 cut(s)	352, 378, 667, 945, 999
ApeKI	GCWGC	6 cut(s)	111, 132, 159, 196, 729, 1066
ArsI	GACNNNNNNTTYG	4 cut(s)	36, 68, 351, 383
AsiGI	ACCGGT	1 cut(s)	1162
AspLEI	GCGC	8 cut(s)	475, 577, 751, 770, 858, 989, 1174, 1205
AspS9I	GGNCC	4 cut(s)	792, 814, 945, 1077
AsuC2I	CCSGG	4 cut(s)	512, 513, 805, 827
AsuHPI	GGTGA	8 cut(s)	254, 265, 301, 460, 910, 1105, 1177, 1255
AvaI	CYCGRG	3 cut(s)	424, 511, 940
AvaII	GGWCC	3 cut(s)	792, 814, 1077
BaeGI	GKGCMC	1 cut(s)	431
BamHI	GGATCC	1 cut(s)	624
BanI	GGYRCC	2 cut(s)	428, 1202
BauI	CACGAG	1 cut(s)	752
BbrPI	CACGTG	4 cut(s)	610, 862, 1156, 1258
BbvI	GCAGC	6 cut(s)	123, 144, 171, 183, 716, 1053
BccI	CCATC	4 cut(s)	65, 208, 1112, 1229
BceAI	ACGGC	9 cut(s)	305, 472, 536, 626, 641, 682, 746, 986, 1190
BciT130I	CCWGG	3 cut(s)	479, 688, 965
BclI	TGATCA	1 cut(s)	1084
BcnI	CCSGG	4 cut(s)	512, 513, 805, 827
BcoDI	GTCTC	5 cut(s)	58, 103, 262, 448, 832
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	157
BfoI	RGCGCY	3 cut(s)	859, 1175, 1206
BfuAI	ACCTGC	2 cut(s)	164, 320
BisI	GCNGC	8 cut(s)	112, 133, 160, 197, 345, 730, 1067, 1106
BlsI	GCNGC	8 cut(s)	113, 134, 161, 198, 346, 731, 1068, 1107
BmcAI	AGTACT	1 cut(s)	145
Bme1390I	CCNGG	7 cut(s)	479, 512, 513, 688, 805, 827, 965
Bme18I	GGWCC	3 cut(s)	792, 814, 1077
BmeRI	GACNNNNNGTC	1 cut(s)	95
BmeT110I	CYCGRG	3 cut(s)	424, 511, 940
BmgBI	CACGTC	1 cut(s)	94
BmgT120I	GGNCC	4 cut(s)	792, 814, 945, 1077
BmiI	GGNNCC	6 cut(s)	430, 626, 793, 946, 1078, 1204
BmrFI	CCNGG	7 cut(s)	479, 512, 513, 688, 805, 827, 965
BmsI	GCATC	2 cut(s)	660, 831
BpmI	CTGGAG	3 cut(s)	124, 173, 899
BpuMI	CCSGG	4 cut(s)	512, 513, 805, 827
BsaAI	YACGTR	4 cut(s)	610, 862, 1156, 1258
BsaHI	GRCGYC	4 cut(s)	240, 639, 759, 1203
BsaI	GGTCTC	1 cut(s)	832
BsaJI	CCNNGG	3 cut(s)	423, 511, 687
BsaWI	WCCGGW	1 cut(s)	1162
BsaXI	ACNNNNNCTCC	8 cut(s)	83, 113, 268, 298, 332, 362, 404, 434
Bsc4I	CCNNNNNNNGG	6 cut(s)	425, 733, 832, 865, 970, 1008
Bse118I	RCCGGY	3 cut(s)	603, 647, 1162
Bse1I	ACTGG	1 cut(s)	141
BseBI	CCWGG	3 cut(s)	479, 688, 965
BseDI	CCNNGG	3 cut(s)	423, 511, 687
BseGI	GGATG	4 cut(s)	57, 822, 1104, 1123
BseLI	CCNNNNNNNGG	6 cut(s)	425, 733, 832, 865, 970, 1008
BseMII	CTCAG	1 cut(s)	1061
BseNI	ACTGG	1 cut(s)	141
BseRI	GAGGAG	7 cut(s)	25, 106, 127, 280, 283, 286, 412
BseSI	GKGCMC	1 cut(s)	431
BseXI	GCAGC	6 cut(s)	123, 144, 171, 183, 716, 1053
BseYI	CCCAGC	2 cut(s)	107, 128
Bsh1236I	CGCG	3 cut(s)	473, 770, 989
Bsh1285I	CGRYCG	2 cut(s)	14, 559
BshFI	GGCC	5 cut(s)	354, 380, 669, 947, 1001
BshNI	GGYRCC	2 cut(s)	428, 1202
BshTI	ACCGGT	1 cut(s)	1162
BsiEI	CGRYCG	2 cut(s)	14, 559
BsiHKCI	CYCGRG	3 cut(s)	424, 511, 940
BsiSI	CCGG	7 cut(s)	351, 512, 604, 648, 804, 826, 1163
BslFI	GGGAC	5 cut(s)	191, 704, 728, 805, 1164
BslI	CCNNNNNNNGG	6 cut(s)	425, 733, 832, 865, 970, 1008
BsmAI	GTCTC	5 cut(s)	58, 103, 262, 448, 832
BsmBI	CGTCTC	4 cut(s)	58, 103, 262, 448
BsmFI	GGGAC	5 cut(s)	191, 704, 728, 805, 1164
BsnI	GGCC	5 cut(s)	354, 380, 669, 947, 1001
Bso31I	GGTCTC	1 cut(s)	832
BsoBI	CYCGRG	3 cut(s)	424, 511, 940
Bsp1286I	GDGCHC	1 cut(s)	431
Bsp143I	GATC	8 cut(s)	11, 306, 373, 415, 624, 926, 960, 1084
BspANI	GGCC	5 cut(s)	354, 380, 669, 947, 1001
BspCNI	CTCAG	1 cut(s)	1062
BspFNI	CGCG	3 cut(s)	473, 770, 989
BspLI	GGNNCC	6 cut(s)	430, 626, 793, 946, 1078, 1204
BspMAI	CTGCAG	1 cut(s)	161
BspMI	ACCTGC	2 cut(s)	164, 320
BspPI	GGATC	5 cut(s)	410, 619, 632, 934, 955
BspT107I	GGYRCC	2 cut(s)	428, 1202
BspTNI	GGTCTC	1 cut(s)	832
BsrFI	RCCGGY	3 cut(s)	603, 647, 1162
BsrI	ACTGG	1 cut(s)	141
BssAI	RCCGGY	3 cut(s)	603, 647, 1162
BssECI	CCNNGG	3 cut(s)	423, 511, 687
BssMI	GATC	8 cut(s)	11, 306, 373, 415, 624, 926, 960, 1084
BssNI	GRCGYC	4 cut(s)	240, 639, 759, 1203
BssSI	CACGAG	1 cut(s)	752
Bst2BI	CACGAG	1 cut(s)	752
Bst2UI	CCWGG	3 cut(s)	479, 688, 965
BstACI	GRCGYC	4 cut(s)	240, 639, 759, 1203
BstAPI	GCANNNNNTGC	1 cut(s)	1128
BstBAI	YACGTR	4 cut(s)	610, 862, 1156, 1258
BstC8I	GCNNGC	2 cut(s)	605, 633
BstDEI	CTNAG	1 cut(s)	1070
BstF5I	GGATG	4 cut(s)	57, 822, 1104, 1123
BstFNI	CGCG	3 cut(s)	473, 770, 989
BstH2I	RGCGCY	3 cut(s)	859, 1175, 1206
BstHHI	GCGC	8 cut(s)	475, 577, 751, 770, 858, 989, 1174, 1205
BstKTI	GATC	8 cut(s)	14, 309, 376, 418, 627, 929, 963, 1087
BstMAI	GTCTC	5 cut(s)	58, 103, 262, 448, 832
BstMBI	GATC	8 cut(s)	11, 306, 373, 415, 624, 926, 960, 1084
BstMCI	CGRYCG	2 cut(s)	14, 559
BstMWI	GCNNNNNNNGC	7 cut(s)	156, 165, 767, 883, 902, 1128, 1178
BstNI	CCWGG	3 cut(s)	479, 688, 965
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	7 cut(s)	477, 510, 511, 686, 803, 825, 963
BstSFI	CTRYAG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	431
BstUI	CGCG	3 cut(s)	473, 770, 989
BstV1I	GCAGC	6 cut(s)	123, 144, 171, 183, 716, 1053
BstX2I	RGATCY	1 cut(s)	624
BstYI	RGATCY	1 cut(s)	624
BsuRI	GGCC	5 cut(s)	354, 380, 669, 947, 1001
BtgZI	GCGATG	1 cut(s)	637
BtrI	CACGTC	1 cut(s)	94
BtsCI	GGATG	4 cut(s)	57, 822, 1104, 1123
BveI	ACCTGC	2 cut(s)	164, 320
Cac8I	GCNNGC	2 cut(s)	605, 633
CaiI	CAGNNNCTG	1 cut(s)	196
CfoI	GCGC	8 cut(s)	475, 577, 751, 770, 858, 989, 1174, 1205
Cfr10I	RCCGGY	3 cut(s)	603, 647, 1162
Cfr13I	GGNCC	4 cut(s)	792, 814, 945, 1077
Cfr9I	CCCGGG	1 cut(s)	511
CpoI	CGGWCCG	1 cut(s)	814
CseI	GACGC	5 cut(s)	202, 248, 647, 767, 883
Csp6I	GTAC	1 cut(s)	144
CspAI	ACCGGT	1 cut(s)	1162
CspI	CGGWCCG	1 cut(s)	814
CviAII	CATG	3 cut(s)	30, 997, 1025
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	1 cut(s)	1070
DinI	GGCGCC	1 cut(s)	1204
DpnI	GATC	8 cut(s)	13, 308, 375, 417, 626, 928, 962, 1086
DpnII	GATC	8 cut(s)	11, 306, 373, 415, 624, 926, 960, 1084
DrdI	GACNNNNNNGTC	1 cut(s)	794
DriI	GACNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	794
EaeI	YGGCCR	2 cut(s)	352, 999
Eam1105I	GACNNNNNGTC	1 cut(s)	95
EciI	GGCGGA	2 cut(s)	13, 827
Eco31I	GGTCTC	1 cut(s)	832
Eco47I	GGWCC	3 cut(s)	792, 814, 1077
Eco57I	CTGAAG	1 cut(s)	200
Eco72I	CACGTG	4 cut(s)	610, 862, 1156, 1258
Eco88I	CYCGRG	3 cut(s)	424, 511, 940
EcoO109I	RGGNCCY	1 cut(s)	945
EcoRII	CCWGG	3 cut(s)	477, 686, 963
EgeI	GGCGCC	1 cut(s)	1204
EheI	GGCGCC	1 cut(s)	1204
Esp3I	CGTCTC	4 cut(s)	58, 103, 262, 448
FaeI	CATG	3 cut(s)	33, 1000, 1028
FaiI	YATR	6 cut(s)	31, 79, 599, 998, 1026, 1297
FaqI	GGGAC	5 cut(s)	191, 704, 728, 805, 1164
FatI	CATG	3 cut(s)	29, 996, 1024
FauI	CCCGC	1 cut(s)	705
FbaI	TGATCA	1 cut(s)	1084
FblI	GTMKAC	3 cut(s)	369, 675, 798
Fnu4HI	GCNGC	8 cut(s)	112, 133, 160, 197, 345, 730, 1067, 1106
FokI	GGATG	4 cut(s)	44, 809, 1111, 1130
Fsp4HI	GCNGC	8 cut(s)	112, 133, 160, 197, 345, 730, 1067, 1106
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	8 cut(s)	474, 576, 750, 769, 857, 988, 1173, 1204
GluI	GCNGC	8 cut(s)	112, 133, 160, 197, 345, 730, 1067, 1106
GsaI	CCCAGC	2 cut(s)	111, 132
GsuI	CTGGAG	3 cut(s)	124, 173, 899
HaeII	RGCGCY	3 cut(s)	859, 1175, 1206
HaeIII	GGCC	5 cut(s)	354, 380, 669, 947, 1001
HapII	CCGG	7 cut(s)	351, 512, 604, 648, 804, 826, 1163
HgaI	GACGC	5 cut(s)	202, 248, 647, 767, 883
HhaI	GCGC	8 cut(s)	475, 577, 751, 770, 858, 989, 1174, 1205
Hin1I	GRCGYC	4 cut(s)	240, 639, 759, 1203
Hin1II	CATG	3 cut(s)	33, 1000, 1028
Hin6I	GCGC	8 cut(s)	473, 575, 749, 768, 856, 987, 1172, 1203
HinP1I	GCGC	8 cut(s)	473, 575, 749, 768, 856, 987, 1172, 1203
HincII	GTYRAC	2 cut(s)	553, 661
HindII	GTYRAC	2 cut(s)	553, 661
HinfI	GANTC	5 cut(s)	44, 398, 528, 716, 737
HpaII	CCGG	7 cut(s)	351, 512, 604, 648, 804, 826, 1163
HphI	GGTGA	8 cut(s)	254, 265, 301, 460, 910, 1105, 1177, 1255
Hpy166II	GTNNAC	9 cut(s)	325, 370, 468, 518, 553, 661, 676, 799, 901
Hpy188I	TCNGA	7 cut(s)	11, 103, 121, 219, 454, 1089, 1270
Hpy188III	TCNNGA	4 cut(s)	190, 304, 413, 622
Hpy8I	GTNNAC	9 cut(s)	325, 370, 468, 518, 553, 661, 676, 799, 901
HpyAV	CCTTC	4 cut(s)	224, 778, 1162, 1240
HpyCH4IV	ACGT	8 cut(s)	93, 366, 591, 609, 861, 1053, 1155, 1257
HpyCH4V	TGCA	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	7 cut(s)	156, 165, 767, 883, 902, 1128, 1178
HpyF3I	CTNAG	1 cut(s)	1070
HpySE526I	ACGT	8 cut(s)	93, 366, 591, 609, 861, 1053, 1155, 1257
Hsp92I	GRCGYC	4 cut(s)	240, 639, 759, 1203
Hsp92II	CATG	3 cut(s)	33, 1000, 1028
HspAI	GCGC	8 cut(s)	473, 575, 749, 768, 856, 987, 1172, 1203
KasI	GGCGCC	1 cut(s)	1202
KroI	GCCGGC	1 cut(s)	603
KroNI	GCCGGC	1 cut(s)	605
Ksp22I	TGATCA	1 cut(s)	1084
Kzo9I	GATC	8 cut(s)	11, 306, 373, 415, 624, 926, 960, 1084
LmnI	GCTCC	5 cut(s)	12, 38, 119, 140, 582
Lsp1109I	GCAGC	6 cut(s)	123, 144, 171, 183, 716, 1053
LweI	GCATC	2 cut(s)	660, 831
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	8 cut(s)	93, 366, 591, 609, 861, 1053, 1155, 1257
MaeIII	GTNAC	4 cut(s)	643, 950, 1003, 1183
MalI	GATC	8 cut(s)	13, 308, 375, 417, 626, 928, 962, 1086
MboI	GATC	8 cut(s)	11, 306, 373, 415, 624, 926, 960, 1084
MboII	GAAGA	1 cut(s)	715
MflI	RGATCY	1 cut(s)	624
MhlI	GDGCHC	1 cut(s)	431
Mly113I	GGCGCC	1 cut(s)	1203
MlyI	GAGTC	4 cut(s)	392, 522, 710, 746
MmeI	TCCRAC	4 cut(s)	126, 201, 477, 744
MroNI	GCCGGC	1 cut(s)	603
MseI	TTAA	1 cut(s)	1278
MspA1I	CMGCKG	2 cut(s)	729, 1082
MspI	CCGG	7 cut(s)	351, 512, 604, 648, 804, 826, 1163
MspR9I	CCNGG	7 cut(s)	479, 512, 513, 688, 805, 827, 965
MvaI	CCWGG	3 cut(s)	479, 688, 965
MvnI	CGCG	3 cut(s)	473, 770, 989
MwoI	GCNNNNNNNGC	7 cut(s)	156, 165, 767, 883, 902, 1128, 1178
NaeI	GCCGGC	1 cut(s)	605
NarI	GGCGCC	1 cut(s)	1203
NciI	CCSGG	4 cut(s)	512, 513, 805, 827
NdeII	GATC	8 cut(s)	11, 306, 373, 415, 624, 926, 960, 1084
NgoMIV	GCCGGC	1 cut(s)	603
NlaIII	CATG	3 cut(s)	33, 1000, 1028
NlaIV	GGNNCC	6 cut(s)	430, 626, 793, 946, 1078, 1204
NmuCI	GTSAC	1 cut(s)	950
NspI	RCATGY	1 cut(s)	33
PaqCI	CACCTGC	2 cut(s)	164, 320
PcsI	WCGNNNNNNNCGW	6 cut(s)	48, 99, 363, 378, 639, 759
PdiI	GCCGGC	1 cut(s)	605
PfeI	GAWTC	1 cut(s)	44
PflMI	CCANNNNNTGG	1 cut(s)	865
PinAI	ACCGGT	1 cut(s)	1162
PkrI	GCNGC	8 cut(s)	113, 134, 161, 198, 346, 731, 1068, 1107
Ple19I	CGATCG	1 cut(s)	14
PleI	GAGTC	4 cut(s)	392, 522, 710, 745
PluTI	GGCGCC	1 cut(s)	1206
PmaCI	CACGTG	4 cut(s)	610, 862, 1156, 1258
PmlI	CACGTG	4 cut(s)	610, 862, 1156, 1258
PpsI	GAGTC	4 cut(s)	392, 522, 710, 745
Ppu21I	YACGTR	4 cut(s)	610, 862, 1156, 1258
Psp6I	CCWGG	3 cut(s)	477, 686, 963
PspCI	CACGTG	4 cut(s)	610, 862, 1156, 1258
PspFI	CCCAGC	2 cut(s)	107, 128
PspGI	CCWGG	3 cut(s)	477, 686, 963
PspN4I	GGNNCC	6 cut(s)	430, 626, 793, 946, 1078, 1204
PspPI	GGNCC	4 cut(s)	792, 814, 945, 1077
PstI	CTGCAG	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	624
PvuI	CGATCG	1 cut(s)	14
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
Rsr2I	CGGWCCG	1 cut(s)	814
RsrII	CGGWCCG	1 cut(s)	814
SaqAI	TTAA	1 cut(s)	1278
SatI	GCNGC	8 cut(s)	112, 133, 160, 197, 345, 730, 1067, 1106
Sau3AI	GATC	8 cut(s)	11, 306, 373, 415, 624, 926, 960, 1084
Sau96I	GGNCC	4 cut(s)	792, 814, 945, 1077
ScaI	AGTACT	1 cut(s)	145
SchI	GAGTC	4 cut(s)	392, 522, 710, 746
ScrFI	CCNGG	7 cut(s)	479, 512, 513, 688, 805, 827, 965
SduI	GDGCHC	1 cut(s)	431
SfaNI	GCATC	2 cut(s)	660, 831
SfcI	CTRYAG	1 cut(s)	157
SfoI	GGCGCC	1 cut(s)	1204
SinI	GGWCC	3 cut(s)	792, 814, 1077
SmaI	CCCGGG	1 cut(s)	513
SspDI	GGCGCC	1 cut(s)	1202
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	7 cut(s)	477, 510, 511, 686, 803, 825, 963
TaiI	ACGT	8 cut(s)	96, 369, 594, 612, 864, 1056, 1158, 1260
TaqI	TCGA	3 cut(s)	237, 396, 959
TatI	WGTACW	1 cut(s)	143
TauI	GCSGC	2 cut(s)	347, 1108
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	1 cut(s)	1278
Tru9I	TTAA	1 cut(s)	1278
TseFI	GTSAC	1 cut(s)	950
TseI	GCWGC	6 cut(s)	111, 132, 159, 196, 729, 1066
Tsp45I	GTSAC	1 cut(s)	950
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	4 cut(s)	244, 430, 730, 939
TspMI	CCCGGG	1 cut(s)	511
Van91I	CCANNNNNTGG	1 cut(s)	865
VpaK11BI	GGWCC	3 cut(s)	792, 814, 1077
XceI	RCATGY	1 cut(s)	33
XmaI	CCCGGG	1 cut(s)	511
XmiI	GTMKAC	3 cut(s)	369, 675, 798
XspI	CTAG	1 cut(s)	147
ZrmI	AGTACT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.