Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0014209

Physical Location & Seq

Genomic Coordinates Forward (+)

54151011 .. 54153157

Gene Structure 2147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG318500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGAAGCTCCGATCGTGGTTCTCCGCCACCTGCTCCTCCCACGAATCCACCGTCTCCATCCCCCAACCCCAACCCTCATACCAAAAACGACACGTCGTCTCCGACTCCAGCAGCTCCTCCGATAACCCCAGCAGCTCCTCCAGTACTTGCGACACCTGCAGCACCAGCCTCCATTCCAATCTCTCCCTCCAGACGCTGCCATCTGTCCCCTCCCTTCAGAAGCTCATCTCCCAACTCGACGCCCCAAACCTCTCCGTCTCTCACCTCTGCTTCACCACCCTCACTCCCACCCCCTCCTCCTCCTCTCTCCCGATCACCTGCCTCGCCGTCCACCACAACCGCCTCTACGCCGCCTCCGGCCACGAAATCAACGTCTACGATCGGGCCGACTTCTCCCACCTCGACTCATTCAACGCTCACGATCCCTCCTCGGGCTCCGTGAAGTCCGTCTCGTTTTCCGACGGCAAGGTGTTCACCGCGCACCAGGACTGTAAAATCAAAGTCTGGGAGATAATCCCGGGTAAACGGCACAGACTCCTAACCACCCTCCCCACCGTCAACGACCGTTTGCTTCGTTTTGCGCTCCCCAAGAACTACGTCAGCATACGCCGGCACGTGAAACGCCTCTGGATCCAGCACGCCGACGCTGTTACCGGCATCGCCGTCAACAACGGCCTCGTCTACTCGGTTTCCTGGGACAAGACCTTGAAGATTTGGCGGGACTCCAACCTCCGCTGCGTGGAGTCCGTCAAGGCGCACGAGGACGCCTTGAGCGCGGTGGCGGTGGCGAAGGACGGGACCGTCTACACCGGGTCTGCGGACCGTCGGATCCGGGTCTGGGCGAGACCGCAAGACGAGAAGCGCCACGTGTTGGTGGCGACGCTGGAGAAGCACAAGTCAGCGGTGAACGCTTTGGCTCTAAACGACGACGGATCGGTGCTGTTCTCGGGGGCCTGTGACCGTTCGATCCTGGTGTGGGAGAGAGAGGACAGCGCGAACCACATGGCGGTTACGGGAGCGTTGAGGGGGCACGGTAAGGCGATACTGTGTTTATTCAACGTCGGGGATTTGCTGCTGAGTGGGTCCGCTGATCGGACGGTGAGGATGTGGCGGCGAGGGGAGGATGGCAGTTATTGCTGTTTGGGGGTTTTGGAGGGACACGTGAAACCGGTGAAGGCGCTGGTGGCGGTTACGGGAGAGAGCGGTGGCGGCGTCGTTTCGGTTGTGAGTGGGAGTTTAGATGGAGTGGTGAAGGTGTGGCATGTGTCGGTTTCGGAGGCGATTAAAGAACAGAAGATGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045159 GO:0046777 GO:0051301 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

434

Amino Acids

47.22

Weight (kDa)

8.89

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	104 - 285	1.7e-12	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	212 - 281	4.8e-08	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	212 - 430	6.1e-21	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	213 - 371	6.9e-12	WDHD1 first WD40 domain
NBCH_WD40	PF20426	220 - 282	3.6e-06	Neurobeachin beta propeller domain
Beta-prop_WDR3_2nd	PF25172	220 - 330	1.1e-13	WDR3 second beta-propeller domain
WD40_Prp19	PF24814	222 - 313	1.5e-09	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	224 - 351	1.3e-08	Echinoderm microtubule-associated protein second beta-propeller
WDR55	PF24796	226 - 423	2e-10	WDR55
WD40_Gbeta	PF25391	230 - 371	1.7e-10	G protein beta WD-40 repeat protein
WD40_CDC20-Fz	PF24807	233 - 370	1.2e-12	CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd	PF25047	246 - 424	2.4e-13	TEP-1 second beta-propeller
Beta-prop_WDR75_1st	PF23869	251 - 332	2.3e-07	WD repeat-containing protein 75 first beta-propeller
Beta-prop_EML	PF23409	254 - 329	4.9e-06	Echinoderm microtubule-associated protein first beta-propeller
WD40_Prp19	PF24814	264 - 348	5.7e-08	Prp19 WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	267 - 373	1.7e-07	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR5	PF25175	270 - 429	1.1e-22	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	287 - 430	7.8e-09	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	287 - 429	8.1e-17	WDR3 first beta-propeller domain
WD40	PF00400	291 - 326	3.8e-07	WD domain, G-beta repeat
WD40_Prp19	PF24814	302 - 393	5.5e-08	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24530
fragaria_vesca	FvH4_4g25271
malus_domestica	MD13G1105300.v1.1 MD16G1105400.v1.1
prunus_persica	Prupe.1G241300_v2.0.a1
pyrus_communis	pycom13g09130 pycom16g08970
rosa_chinensis	RchiOBHm_Chr4g0432531
rosa_laevigata	RLG00000006834
rosa_multiflora	Rmu_sc0009980.1_g000001
rosa_roxburghii	Rroxscaffold_5G00373980
rosa_rugosa	Rorug04G0260000.1
rosa_samantha	Rh4AG314800 Rh4BG322500 Rh4CG337700 Rh4DG318500
rosa_wichuraiana	Rw4G027370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	38, 164, 326
AasI	GACNNNNNNGTC	1 cut(s)	800
Acc36I	ACCTGC	3 cut(s)	38, 164, 326
AccB7I	CCANNNNNTGG	1 cut(s)	871
AccBSI	CCGCTC	1 cut(s)	1203
AccI	GTMKAC	3 cut(s)	375, 681, 804
AccII	CGCG	3 cut(s)	479, 776, 995
AclWI	GGATC	7 cut(s)	416, 625, 638, 823, 836, 940, 961
AcoI	YGGCCR	1 cut(s)	358
AcuI	CTGAAG	1 cut(s)	200
AcvI	CACGTG	3 cut(s)	616, 868, 1162
AcyI	GRCGYC	3 cut(s)	240, 765, 1212
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	7 cut(s)	431, 739, 838, 871, 976, 1006, 1092
AflIII	ACRYGT	3 cut(s)	91, 867, 1159
AgeI	ACCGGT	1 cut(s)	1168
AgsI	TTSAA	3 cut(s)	412, 709, 1057
AhdI	GACNNNNNGTC	1 cut(s)	95
AjiI	CACGTC	1 cut(s)	94
AjnI	CCWGG	3 cut(s)	483, 692, 969
AluBI	AGCT	4 cut(s)	7, 114, 135, 223
AluI	AGCT	4 cut(s)	7, 114, 135, 223
Alw26I	GTCTC	5 cut(s)	58, 103, 262, 454, 838
AlwI	GGATC	7 cut(s)	416, 625, 638, 823, 836, 940, 961
AlwNI	CAGNNNCTG	1 cut(s)	196
Ama87I	CYCGRG	3 cut(s)	430, 517, 946
AoxI	GGCC	4 cut(s)	358, 384, 673, 951
ApeKI	GCWGC	6 cut(s)	111, 132, 159, 196, 735, 1072
ArsI	GACNNNNNNTTYG	4 cut(s)	36, 68, 357, 389
AsiGI	ACCGGT	1 cut(s)	1168
AspLEI	GCGC	7 cut(s)	481, 583, 757, 776, 864, 995, 1180
AspS9I	GGNCC	5 cut(s)	384, 798, 820, 951, 1083
AsuC2I	CCSGG	4 cut(s)	518, 519, 811, 833
AsuHPI	GGTGA	8 cut(s)	254, 265, 307, 466, 916, 1111, 1183, 1261
AvaI	CYCGRG	3 cut(s)	430, 517, 946
AvaII	GGWCC	3 cut(s)	798, 820, 1083
BaeGI	GKGCMC	1 cut(s)	1032
BamHI	GGATCC	2 cut(s)	630, 828
BanII	GRGCYC	1 cut(s)	437
BauI	CACGAG	1 cut(s)	758
BbrPI	CACGTG	3 cut(s)	616, 868, 1162
BbvI	GCAGC	6 cut(s)	123, 144, 171, 183, 722, 1059
BccI	CCATC	4 cut(s)	65, 208, 1118, 1235
BceAI	ACGGC	5 cut(s)	311, 478, 542, 647, 688
BciT130I	CCWGG	3 cut(s)	485, 694, 971
BcnI	CCSGG	4 cut(s)	518, 519, 811, 833
BcoDI	GTCTC	5 cut(s)	58, 103, 262, 454, 838
BfmI	CTRYAG	1 cut(s)	157
BfoI	RGCGCY	2 cut(s)	865, 1181
BfuAI	ACCTGC	3 cut(s)	38, 164, 326
BisI	GCNGC	9 cut(s)	112, 133, 160, 197, 351, 736, 1073, 1112, 1210
BlsI	GCNGC	9 cut(s)	113, 134, 161, 198, 352, 737, 1074, 1113, 1211
BmcAI	AGTACT	1 cut(s)	145
Bme1390I	CCNGG	7 cut(s)	485, 518, 519, 694, 811, 833, 971
Bme18I	GGWCC	3 cut(s)	798, 820, 1083
BmeRI	GACNNNNNGTC	1 cut(s)	95
BmeT110I	CYCGRG	3 cut(s)	430, 517, 946
BmgBI	CACGTC	1 cut(s)	94
BmgT120I	GGNCC	5 cut(s)	384, 798, 820, 951, 1083
BmiI	GGNNCC	6 cut(s)	436, 632, 799, 830, 952, 1084
BmrFI	CCNGG	7 cut(s)	485, 518, 519, 694, 811, 833, 971
BmsI	GCATC	1 cut(s)	666
BpmI	CTGGAG	4 cut(s)	91, 124, 173, 905
BpuEI	CTTGAG	1 cut(s)	790
BpuMI	CCSGG	4 cut(s)	518, 519, 811, 833
BsaAI	YACGTR	3 cut(s)	616, 868, 1162
BsaHI	GRCGYC	3 cut(s)	240, 765, 1212
BsaI	GGTCTC	1 cut(s)	838
BsaJI	CCNNGG	3 cut(s)	429, 517, 693
BsaWI	WCCGGW	1 cut(s)	1168
BsaXI	ACNNNNNCTCC	8 cut(s)	83, 113, 268, 298, 338, 368, 410, 440
Bsc4I	CCNNNNNNNGG	7 cut(s)	431, 739, 838, 871, 976, 1006, 1092
Bse118I	RCCGGY	3 cut(s)	609, 653, 1168
Bse1I	ACTGG	1 cut(s)	141
BseBI	CCWGG	3 cut(s)	485, 694, 971
BseDI	CCNNGG	3 cut(s)	429, 517, 693
BseGI	GGATG	3 cut(s)	57, 1110, 1129
BseLI	CCNNNNNNNGG	7 cut(s)	431, 739, 838, 871, 976, 1006, 1092
BseMII	CTCAG	1 cut(s)	1067
BseNI	ACTGG	1 cut(s)	141
BseRI	GAGGAG	7 cut(s)	25, 106, 127, 286, 289, 292, 418
BseSI	GKGCMC	1 cut(s)	1032
BseXI	GCAGC	6 cut(s)	123, 144, 171, 183, 722, 1059
BseYI	CCCAGC	1 cut(s)	128
Bsh1236I	CGCG	3 cut(s)	479, 776, 995
Bsh1285I	CGRYCG	3 cut(s)	14, 382, 565
BshFI	GGCC	4 cut(s)	360, 386, 675, 953
BshTI	ACCGGT	1 cut(s)	1168
BsiEI	CGRYCG	3 cut(s)	14, 382, 565
BsiHKCI	CYCGRG	3 cut(s)	430, 517, 946
BsiSI	CCGG	7 cut(s)	357, 518, 610, 654, 810, 832, 1169
BslFI	GGGAC	5 cut(s)	191, 710, 734, 811, 1170
BslI	CCNNNNNNNGG	7 cut(s)	431, 739, 838, 871, 976, 1006, 1092
BsmAI	GTCTC	5 cut(s)	58, 103, 262, 454, 838
BsmBI	CGTCTC	4 cut(s)	58, 103, 262, 454
BsmFI	GGGAC	5 cut(s)	191, 710, 734, 811, 1170
BsnI	GGCC	4 cut(s)	360, 386, 675, 953
Bso31I	GGTCTC	1 cut(s)	838
BsoBI	CYCGRG	3 cut(s)	430, 517, 946
Bsp1286I	GDGCHC	2 cut(s)	437, 1032
Bsp143I	GATC	9 cut(s)	11, 312, 379, 421, 630, 828, 932, 966, 1090
BspANI	GGCC	4 cut(s)	360, 386, 675, 953
BspCNI	CTCAG	1 cut(s)	1068
BspFNI	CGCG	3 cut(s)	479, 776, 995
BspLI	GGNNCC	6 cut(s)	436, 632, 799, 830, 952, 1084
BspMAI	CTGCAG	1 cut(s)	161
BspMI	ACCTGC	3 cut(s)	38, 164, 326
BspPI	GGATC	7 cut(s)	416, 625, 638, 823, 836, 940, 961
BspTNI	GGTCTC	1 cut(s)	838
BsrBI	CCGCTC	1 cut(s)	1203
BsrFI	RCCGGY	3 cut(s)	609, 653, 1168
BsrI	ACTGG	1 cut(s)	141
BssAI	RCCGGY	3 cut(s)	609, 653, 1168
BssECI	CCNNGG	3 cut(s)	429, 517, 693
BssMI	GATC	9 cut(s)	11, 312, 379, 421, 630, 828, 932, 966, 1090
BssNI	GRCGYC	3 cut(s)	240, 765, 1212
BssSI	CACGAG	1 cut(s)	758
Bst2BI	CACGAG	1 cut(s)	758
Bst2UI	CCWGG	3 cut(s)	485, 694, 971
BstACI	GRCGYC	3 cut(s)	240, 765, 1212
BstAPI	GCANNNNNTGC	1 cut(s)	1134
BstBAI	YACGTR	3 cut(s)	616, 868, 1162
BstC8I	GCNNGC	2 cut(s)	611, 639
BstDEI	CTNAG	1 cut(s)	1076
BstF5I	GGATG	3 cut(s)	57, 1110, 1129
BstFNI	CGCG	3 cut(s)	479, 776, 995
BstH2I	RGCGCY	2 cut(s)	865, 1181
BstHHI	GCGC	7 cut(s)	481, 583, 757, 776, 864, 995, 1180
BstKTI	GATC	9 cut(s)	14, 315, 382, 424, 633, 831, 935, 969, 1093
BstMAI	GTCTC	5 cut(s)	58, 103, 262, 454, 838
BstMBI	GATC	9 cut(s)	11, 312, 379, 421, 630, 828, 932, 966, 1090
BstMCI	CGRYCG	3 cut(s)	14, 382, 565
BstMWI	GCNNNNNNNGC	8 cut(s)	156, 165, 773, 889, 908, 1134, 1184, 1209
BstNI	CCWGG	3 cut(s)	485, 694, 971
BstNSI	RCATGY	1 cut(s)	1265
BstSCI	CCNGG	7 cut(s)	483, 516, 517, 692, 809, 831, 969
BstSFI	CTRYAG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	1032
BstUI	CGCG	3 cut(s)	479, 776, 995
BstV1I	GCAGC	6 cut(s)	123, 144, 171, 183, 722, 1059
BstX2I	RGATCY	2 cut(s)	630, 828
BstYI	RGATCY	2 cut(s)	630, 828
BsuRI	GGCC	4 cut(s)	360, 386, 675, 953
BtgZI	GCGATG	1 cut(s)	643
BtrI	CACGTC	1 cut(s)	94
BtsCI	GGATG	3 cut(s)	57, 1110, 1129
BveI	ACCTGC	3 cut(s)	38, 164, 326
Cac8I	GCNNGC	2 cut(s)	611, 639
CaiI	CAGNNNCTG	1 cut(s)	196
CfoI	GCGC	7 cut(s)	481, 583, 757, 776, 864, 995, 1180
Cfr10I	RCCGGY	3 cut(s)	609, 653, 1168
Cfr13I	GGNCC	5 cut(s)	384, 798, 820, 951, 1083
Cfr9I	CCCGGG	1 cut(s)	517
CpoI	CGGWCCG	1 cut(s)	820
CseI	GACGC	6 cut(s)	202, 248, 653, 773, 889, 1201
Csp6I	GTAC	1 cut(s)	144
CspAI	ACCGGT	1 cut(s)	1168
CspI	CGGWCCG	1 cut(s)	820
CviAII	CATG	2 cut(s)	1003, 1262
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	1 cut(s)	1076
DpnI	GATC	9 cut(s)	13, 314, 381, 423, 632, 830, 934, 968, 1092
DpnII	GATC	9 cut(s)	11, 312, 379, 421, 630, 828, 932, 966, 1090
DrdI	GACNNNNNNGTC	1 cut(s)	800
DriI	GACNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	800
EaeI	YGGCCR	1 cut(s)	358
Eam1105I	GACNNNNNGTC	1 cut(s)	95
EciI	GGCGGA	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	437
Eco31I	GGTCTC	1 cut(s)	838
Eco47I	GGWCC	3 cut(s)	798, 820, 1083
Eco57I	CTGAAG	1 cut(s)	200
Eco72I	CACGTG	3 cut(s)	616, 868, 1162
Eco88I	CYCGRG	3 cut(s)	430, 517, 946
EcoO109I	RGGNCCY	1 cut(s)	951
EcoRII	CCWGG	3 cut(s)	483, 692, 969
EcoT38I	GRGCYC	1 cut(s)	437
Esp3I	CGTCTC	4 cut(s)	58, 103, 262, 454
FaeI	CATG	2 cut(s)	1006, 1265
FaiI	YATR	5 cut(s)	79, 605, 1004, 1263, 1303
FaqI	GGGAC	5 cut(s)	191, 710, 734, 811, 1170
FatI	CATG	2 cut(s)	1002, 1261
FauI	CCCGC	1 cut(s)	711
FblI	GTMKAC	3 cut(s)	375, 681, 804
Fnu4HI	GCNGC	9 cut(s)	112, 133, 160, 197, 351, 736, 1073, 1112, 1210
FokI	GGATG	3 cut(s)	44, 1117, 1136
FriOI	GRGCYC	1 cut(s)	437
Fsp4HI	GCNGC	9 cut(s)	112, 133, 160, 197, 351, 736, 1073, 1112, 1210
GlaI	GCGC	7 cut(s)	480, 582, 756, 775, 863, 994, 1179
GluI	GCNGC	9 cut(s)	112, 133, 160, 197, 351, 736, 1073, 1112, 1210
GsaI	CCCAGC	1 cut(s)	132
GsuI	CTGGAG	4 cut(s)	91, 124, 173, 905
HaeII	RGCGCY	2 cut(s)	865, 1181
HaeIII	GGCC	4 cut(s)	360, 386, 675, 953
HapII	CCGG	7 cut(s)	357, 518, 610, 654, 810, 832, 1169
HgaI	GACGC	6 cut(s)	202, 248, 653, 773, 889, 1201
HhaI	GCGC	7 cut(s)	481, 583, 757, 776, 864, 995, 1180
Hin1I	GRCGYC	3 cut(s)	240, 765, 1212
Hin1II	CATG	2 cut(s)	1006, 1265
Hin6I	GCGC	7 cut(s)	479, 581, 755, 774, 862, 993, 1178
HinP1I	GCGC	7 cut(s)	479, 581, 755, 774, 862, 993, 1178
HincII	GTYRAC	2 cut(s)	559, 667
HindII	GTYRAC	2 cut(s)	559, 667
HinfI	GANTC	6 cut(s)	44, 104, 404, 534, 722, 743
HpaII	CCGG	7 cut(s)	357, 518, 610, 654, 810, 832, 1169
HphI	GGTGA	8 cut(s)	254, 265, 307, 466, 916, 1111, 1183, 1261
Hpy166II	GTNNAC	9 cut(s)	331, 376, 474, 524, 559, 667, 682, 805, 907
Hpy188I	TCNGA	8 cut(s)	11, 103, 121, 219, 460, 828, 1095, 1276
Hpy188III	TCNNGA	4 cut(s)	190, 310, 419, 628
Hpy8I	GTNNAC	9 cut(s)	331, 376, 474, 524, 559, 667, 682, 805, 907
HpyAV	CCTTC	4 cut(s)	224, 784, 1168, 1246
HpyCH4IV	ACGT	7 cut(s)	93, 372, 597, 615, 867, 1059, 1161
HpyCH4V	TGCA	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	8 cut(s)	156, 165, 773, 889, 908, 1134, 1184, 1209
HpyF3I	CTNAG	1 cut(s)	1076
HpySE526I	ACGT	7 cut(s)	93, 372, 597, 615, 867, 1059, 1161
Hsp92I	GRCGYC	3 cut(s)	240, 765, 1212
Hsp92II	CATG	2 cut(s)	1006, 1265
HspAI	GCGC	7 cut(s)	479, 581, 755, 774, 862, 993, 1178
KroI	GCCGGC	1 cut(s)	609
KroNI	GCCGGC	1 cut(s)	611
Kzo9I	GATC	9 cut(s)	11, 312, 379, 421, 630, 828, 932, 966, 1090
LmnI	GCTCC	7 cut(s)	12, 38, 119, 140, 440, 588, 1016
Lsp1109I	GCAGC	6 cut(s)	123, 144, 171, 183, 722, 1059
LweI	GCATC	1 cut(s)	666
MaeII	ACGT	7 cut(s)	93, 372, 597, 615, 867, 1059, 1161
MaeIII	GTNAC	4 cut(s)	649, 956, 1009, 1189
MalI	GATC	9 cut(s)	13, 314, 381, 423, 632, 830, 934, 968, 1092
MbiI	CCGCTC	1 cut(s)	1203
MboI	GATC	9 cut(s)	11, 312, 379, 421, 630, 828, 932, 966, 1090
MboII	GAAGA	1 cut(s)	721
MflI	RGATCY	2 cut(s)	630, 828
MhlI	GDGCHC	2 cut(s)	437, 1032
MlyI	GAGTC	5 cut(s)	98, 398, 528, 716, 752
MmeI	TCCRAC	4 cut(s)	126, 483, 750, 806
MroNI	GCCGGC	1 cut(s)	609
MseI	TTAA	1 cut(s)	1284
MspA1I	CMGCKG	3 cut(s)	735, 902, 1088
MspI	CCGG	7 cut(s)	357, 518, 610, 654, 810, 832, 1169
MspR9I	CCNGG	7 cut(s)	485, 518, 519, 694, 811, 833, 971
MvaI	CCWGG	3 cut(s)	485, 694, 971
MvnI	CGCG	3 cut(s)	479, 776, 995
MwoI	GCNNNNNNNGC	8 cut(s)	156, 165, 773, 889, 908, 1134, 1184, 1209
NaeI	GCCGGC	1 cut(s)	611
NciI	CCSGG	4 cut(s)	518, 519, 811, 833
NdeII	GATC	9 cut(s)	11, 312, 379, 421, 630, 828, 932, 966, 1090
NgoMIV	GCCGGC	1 cut(s)	609
NlaIII	CATG	2 cut(s)	1006, 1265
NlaIV	GGNNCC	6 cut(s)	436, 632, 799, 830, 952, 1084
NmuCI	GTSAC	1 cut(s)	956
NspI	RCATGY	1 cut(s)	1265
PaqCI	CACCTGC	3 cut(s)	38, 164, 326
PcsI	WCGNNNNNNNCGW	4 cut(s)	48, 99, 369, 384
PdiI	GCCGGC	1 cut(s)	611
PfeI	GAWTC	1 cut(s)	44
PflMI	CCANNNNNTGG	1 cut(s)	871
PinAI	ACCGGT	1 cut(s)	1168
PkrI	GCNGC	9 cut(s)	113, 134, 161, 198, 352, 737, 1074, 1113, 1211
Ple19I	CGATCG	2 cut(s)	14, 382
PleI	GAGTC	5 cut(s)	98, 398, 528, 716, 751
PmaCI	CACGTG	3 cut(s)	616, 868, 1162
PmlI	CACGTG	3 cut(s)	616, 868, 1162
PpsI	GAGTC	5 cut(s)	98, 398, 528, 716, 751
Ppu21I	YACGTR	3 cut(s)	616, 868, 1162
Psp6I	CCWGG	3 cut(s)	483, 692, 969
PspCI	CACGTG	3 cut(s)	616, 868, 1162
PspFI	CCCAGC	1 cut(s)	128
PspGI	CCWGG	3 cut(s)	483, 692, 969
PspN4I	GGNNCC	6 cut(s)	436, 632, 799, 830, 952, 1084
PspPI	GGNCC	5 cut(s)	384, 798, 820, 951, 1083
PstI	CTGCAG	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	196
PsuI	RGATCY	2 cut(s)	630, 828
PvuI	CGATCG	2 cut(s)	14, 382
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
Rsr2I	CGGWCCG	1 cut(s)	820
RsrII	CGGWCCG	1 cut(s)	820
SaqAI	TTAA	1 cut(s)	1284
SatI	GCNGC	9 cut(s)	112, 133, 160, 197, 351, 736, 1073, 1112, 1210
Sau3AI	GATC	9 cut(s)	11, 312, 379, 421, 630, 828, 932, 966, 1090
Sau96I	GGNCC	5 cut(s)	384, 798, 820, 951, 1083
ScaI	AGTACT	1 cut(s)	145
SchI	GAGTC	5 cut(s)	98, 398, 528, 716, 752
ScrFI	CCNGG	7 cut(s)	485, 518, 519, 694, 811, 833, 971
SduI	GDGCHC	2 cut(s)	437, 1032
SfaNI	GCATC	1 cut(s)	666
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	3 cut(s)	798, 820, 1083
SmaI	CCCGGG	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	769
SmoI	CTYRAG	1 cut(s)	769
StyD4I	CCNGG	7 cut(s)	483, 516, 517, 692, 809, 831, 969
TaiI	ACGT	7 cut(s)	96, 375, 600, 618, 870, 1062, 1164
TaqI	TCGA	3 cut(s)	237, 402, 965
TatI	WGTACW	1 cut(s)	143
TauI	GCSGC	3 cut(s)	353, 1114, 1212
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	1 cut(s)	1284
Tru9I	TTAA	1 cut(s)	1284
TseFI	GTSAC	1 cut(s)	956
TseI	GCWGC	6 cut(s)	111, 132, 159, 196, 735, 1072
Tsp45I	GTSAC	1 cut(s)	956
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	5 cut(s)	244, 427, 436, 736, 945
TspMI	CCCGGG	1 cut(s)	517
Van91I	CCANNNNNTGG	1 cut(s)	871
VpaK11BI	GGWCC	3 cut(s)	798, 820, 1083
XceI	RCATGY	1 cut(s)	1265
XmaI	CCCGGG	1 cut(s)	517
XmiI	GTMKAC	3 cut(s)	375, 681, 804
ZrmI	AGTACT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.