Rh5BG307600

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0018614
Physical Location & Seq
Forward (+)
40104921 .. 40105587
667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG307600.1

Sequence Viewer

Length: 543 bp
ATGCCAGGAAAGGACCCGCTGTGCCTGCCGCCTCTGCTGCATCTTGCGCATATGACTTTGGTTATGCTCATGGGATGTGGGTTTGATTATTTCTTGGGCATAGAATCTCAGATCAAGGCTCCCCTTGGCTGGGGGATTTTTACGGACGAACGGGAGGAGGGCGTGCGAGGCAGTAGTAGAGATGCAGATGGCATCTTAGGGTTGGGAGTAGGGCACCCAGCCCACCTGTTAGAGGGGCTGGGGGCGGCAACTCTTTATCAATTCTCTTACTGTTTGCCACTGAACTATGTGATTGAAGAAAGTACTGACCAGCAACGCCACCCGGCTACTCTAAACTTCGGAGAAAATGCAGCTATCAGGGGTCATCGGGCTGTGAGAACGCCCATTCTAAGGCTGAAAGGGTCAGGACCCACCAAGGATTTTTCATATCTGAATCGGACAGGGATCTATGTGAACCGCCATAGGCTGCATATAAACACACAAGTCTTTCATCCCTCCCAGGGAGGATTCATTGTGGACACAGCATCGCCGAACTGGAAGTGA

Protein Analysis

180

Amino Acids

19.85

Weight (kDa)

7.12

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018614)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0044761
rosa_laevigata RLG00000034297
rosa_multiflora Rmu_ssc0000442.1_g000001
rosa_roxburghii Rroxscaffold_1G00036270
rosa_rugosa Rorug05G0218000
rosa_samantha Rh5AG300800 Rh5BG307600 Rh5DG317700
rosa_wichuraiana Rw5G027830 Rw5G027870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 48
AccB1I GGYRCC 1 cut(s) 213
AciI CCGC 4 cut(s) 17, 29, 245, 457
AclWI GGATC 1 cut(s) 452
AfaI GTAC 1 cut(s) 304
AfiI CCNNNNNNNGG 5 cut(s) 129, 130, 232, 390, 500
AgsI TTSAA 1 cut(s) 296
AjnI CCWGG 2 cut(s) 4, 498
AluBI AGCT 1 cut(s) 353
AluI AGCT 1 cut(s) 353
AlwI GGATC 1 cut(s) 452
ApeKI GCWGC 3 cut(s) 37, 350, 466
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 2 cut(s) 13, 407
AsuC2I CCSGG 1 cut(s) 323
AvaII GGWCC 2 cut(s) 13, 407
BaeGI GKGCMC 1 cut(s) 216
BanI GGYRCC 1 cut(s) 213
BbvI GCAGC 3 cut(s) 24, 362, 453
BccI CCATC 1 cut(s) 182
BciT130I CCWGG 2 cut(s) 6, 500
BcnI CCSGG 1 cut(s) 323
BisI GCNGC 5 cut(s) 29, 38, 246, 351, 467
BlsI GCNGC 5 cut(s) 30, 39, 247, 352, 468
BmcAI AGTACT 1 cut(s) 304
Bme1390I CCNGG 3 cut(s) 6, 323, 500
Bme18I GGWCC 2 cut(s) 13, 407
BmgT120I GGNCC 2 cut(s) 13, 407
BmiI GGNNCC 4 cut(s) 15, 120, 215, 409
BmrFI CCNGG 3 cut(s) 6, 323, 500
BmsI GCATC 4 cut(s) 49, 172, 201, 533
BpuMI CCSGG 1 cut(s) 323
BsaJI CCNNGG 4 cut(s) 124, 414, 498, 499
Bsc4I CCNNNNNNNGG 5 cut(s) 129, 130, 232, 390, 500
Bse1I ACTGG 1 cut(s) 539
BseBI CCWGG 2 cut(s) 6, 500
BseDI CCNNGG 4 cut(s) 124, 414, 498, 499
BseGI GGATG 2 cut(s) 80, 490
BseLI CCNNNNNNNGG 5 cut(s) 129, 130, 232, 390, 500
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 539
BseRI GAGGAG 1 cut(s) 170
BseSI GKGCMC 1 cut(s) 216
BseXI GCAGC 3 cut(s) 24, 362, 453
BseYI CCCAGC 3 cut(s) 129, 217, 238
BshNI GGYRCC 1 cut(s) 213
BsiSI CCGG 1 cut(s) 323
BslI CCNNNNNNNGG 5 cut(s) 129, 130, 232, 390, 500
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 2 cut(s) 111, 444
BspACI CCGC 4 cut(s) 17, 29, 245, 457
BspCNI CTCAG 1 cut(s) 121
BspLI GGNNCC 4 cut(s) 15, 120, 215, 409
BspPI GGATC 1 cut(s) 452
BspT107I GGYRCC 1 cut(s) 213
BsrI ACTGG 1 cut(s) 539
BssECI CCNNGG 4 cut(s) 124, 414, 498, 499
BssMI GATC 2 cut(s) 111, 444
BssT1I CCWWGG 2 cut(s) 124, 414
Bst2UI CCWGG 2 cut(s) 6, 500
Bst4CI ACNGT 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 26, 164
BstDEI CTNAG 3 cut(s) 108, 196, 389
BstENI CCTNNNNNAGG 1 cut(s) 230
BstF5I GGATG 2 cut(s) 80, 490
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 2 cut(s) 114, 447
BstMBI GATC 2 cut(s) 111, 444
BstMWI GCNNNNNNNGC 5 cut(s) 25, 34, 37, 46, 168
BstNI CCWGG 2 cut(s) 6, 500
BstSCI CCNGG 3 cut(s) 4, 321, 498
BstSLI GKGCMC 1 cut(s) 216
BstV1I GCAGC 3 cut(s) 24, 362, 453
BstX2I RGATCY 1 cut(s) 444
BstYI RGATCY 1 cut(s) 444
BtgZI GCGATG 1 cut(s) 510
BtsCI GGATG 2 cut(s) 80, 490
BtsIMutI CAGTG 1 cut(s) 278
Cac8I GCNNGC 2 cut(s) 26, 164
CfoI GCGC 1 cut(s) 49
Cfr13I GGNCC 2 cut(s) 13, 407
Csp6I GTAC 1 cut(s) 303
CviAII CATG 1 cut(s) 70
CviJI RGCY 9 cut(s) 119, 129, 221, 238, 326, 353, 371, 394, 466
CviKI_1 RGCY 9 cut(s) 119, 129, 221, 238, 326, 353, 371, 394, 466
CviQI GTAC 1 cut(s) 303
DdeI CTNAG 3 cut(s) 108, 196, 389
DpnI GATC 2 cut(s) 113, 446
DpnII GATC 2 cut(s) 111, 444
Eco130I CCWWGG 2 cut(s) 124, 414
Eco47I GGWCC 2 cut(s) 13, 407
EcoNI CCTNNNNNAGG 1 cut(s) 230
EcoO109I RGGNCCY 2 cut(s) 13, 407
EcoRII CCWGG 2 cut(s) 4, 498
EcoT14I CCWWGG 2 cut(s) 124, 414
ErhI CCWWGG 2 cut(s) 124, 414
FaeI CATG 1 cut(s) 73
FatI CATG 1 cut(s) 69
FauI CCCGC 1 cut(s) 24
FauNDI CATATG 1 cut(s) 51
Fnu4HI GCNGC 5 cut(s) 29, 38, 246, 351, 467
FokI GGATG 2 cut(s) 87, 477
Fsp4HI GCNGC 5 cut(s) 29, 38, 246, 351, 467
FspI TGCGCA 1 cut(s) 48
GlaI GCGC 1 cut(s) 48
GluI GCNGC 5 cut(s) 29, 38, 246, 351, 467
GsaI CCCAGC 3 cut(s) 133, 221, 242
HapII CCGG 1 cut(s) 323
HhaI GCGC 1 cut(s) 49
Hin1II CATG 1 cut(s) 73
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HinfI GANTC 3 cut(s) 104, 433, 507
HpaII CCGG 1 cut(s) 323
Hpy166II GTNNAC 2 cut(s) 454, 517
Hpy188I TCNGA 4 cut(s) 111, 341, 432, 438
Hpy188III TCNNGA 1 cut(s) 405
Hpy8I GTNNAC 2 cut(s) 454, 517
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4V TGCA 4 cut(s) 40, 185, 350, 469
HpyF10VI GCNNNNNNNGC 5 cut(s) 25, 34, 37, 46, 168
HpyF3I CTNAG 3 cut(s) 108, 196, 389
Hsp92II CATG 1 cut(s) 73
HspAI GCGC 1 cut(s) 47
Kzo9I GATC 2 cut(s) 111, 444
LmnI GCTCC 1 cut(s) 124
Lsp1109I GCAGC 3 cut(s) 24, 362, 453
LweI GCATC 4 cut(s) 49, 172, 201, 533
MalI GATC 2 cut(s) 113, 446
MboI GATC 2 cut(s) 111, 444
MboII GAAGA 1 cut(s) 308
MflI RGATCY 1 cut(s) 444
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 1 cut(s) 260
MnlI CCTC 7 cut(s) 42, 148, 151, 161, 226, 497, 505
MspA1I CMGCKG 1 cut(s) 19
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 3 cut(s) 6, 323, 500
MvaI CCWGG 2 cut(s) 6, 500
MwoI GCNNNNNNNGC 5 cut(s) 25, 34, 37, 46, 168
NciI CCSGG 1 cut(s) 323
NdeI CATATG 1 cut(s) 51
NdeII GATC 2 cut(s) 111, 444
NlaIII CATG 1 cut(s) 73
NlaIV GGNNCC 4 cut(s) 15, 120, 215, 409
NsbI TGCGCA 1 cut(s) 48
PasI CCCWGGG 1 cut(s) 499
PfeI GAWTC 3 cut(s) 104, 433, 507
PkrI GCNGC 5 cut(s) 30, 39, 247, 352, 468
PpuMI RGGWCCY 2 cut(s) 13, 407
Psp5II RGGWCCY 2 cut(s) 13, 407
Psp6I CCWGG 2 cut(s) 4, 498
PspFI CCCAGC 3 cut(s) 129, 217, 238
PspGI CCWGG 2 cut(s) 4, 498
PspN4I GGNNCC 4 cut(s) 15, 120, 215, 409
PspPI GGNCC 2 cut(s) 13, 407
PspPPI RGGWCCY 2 cut(s) 13, 407
PsuI RGATCY 1 cut(s) 444
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
SatI GCNGC 5 cut(s) 29, 38, 246, 351, 467
Sau3AI GATC 2 cut(s) 111, 444
Sau96I GGNCC 2 cut(s) 13, 407
ScaI AGTACT 1 cut(s) 304
ScrFI CCNGG 3 cut(s) 6, 323, 500
SduI GDGCHC 1 cut(s) 216
SetI ASST 2 cut(s) 228, 355
SfaNI GCATC 4 cut(s) 49, 172, 201, 533
SinI GGWCC 2 cut(s) 13, 407
Sse9I AATT 1 cut(s) 260
SsiI CCGC 4 cut(s) 17, 29, 245, 457
StyD4I CCNGG 3 cut(s) 4, 321, 498
StyI CCWWGG 2 cut(s) 124, 414
TaaI ACNGT 1 cut(s) 272
TasI AATT 1 cut(s) 260
TatI WGTACW 1 cut(s) 302
TauI GCSGC 2 cut(s) 31, 248
TfiI GAWTC 3 cut(s) 104, 433, 507
TscAI CASTG 1 cut(s) 285
TseI GCWGC 3 cut(s) 37, 350, 466
TspDTI ATGAA 3 cut(s) 414, 479, 499
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 1 cut(s) 285
VpaK11BI GGWCC 2 cut(s) 13, 407
XagI CCTNNNNNAGG 1 cut(s) 230
ZrmI AGTACT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.