Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0018614

Physical Location & Seq

Genomic Coordinates Forward (+)

41464668 .. 41466238

Gene Structure 1571 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G027830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGTTGGCACCTCCTCCAAGCCAAACATCTCGCATTCATTCCTGGCCATGTCAGGAAAGGACCCGCTGTGCCTGCCGCCTCTGCTGCATCTTGCGCATATGACTTTGGTTATGCTCATGGGATGTGTGGGTTTGATTATTTCTTGGGCATAGAATCTCAGATCAAGGCTCCCCTTGACTGGGGGATTTTTACAGACGAACGGGAGGAGGGCGTGCGAGGCAGTAGTAGAGATGCAGATGGCATCTTAGGGTTGGGAGTAGGGCACCCAGCCAACCTGTTAGAGGGGCTGGGGGCGGCAACTCTTTATCAATTCTCTTACTGTTTGCCACTGAACTATGTGATTGAAGAAAGTACTGACCAGCAACGCCACCCGGCTACTCTAAACTTCGGAGAAAATGCAGCTATCAGGGGTCGTCGGGCTGTGAGGTCACCCATTCTAAGGCTGAAAGGGTCAGGACCCACCAAGGATTTTTCATATCTGAATCTGACAGGGATCTATGTGAACCGCCAGAGGCTGCATATAAACACACAAGTCTTTCATCCCTCCCAGGGAGGATTCATTGTGGACACAGCATCGCCGTACTGGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005576 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Asp TAXi_C TAXi_N

Protein Analysis

198

Amino Acids

21.72

Weight (kDa)

8.43

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018614)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0044761
rosa_laevigata	RLG00000034297
rosa_multiflora	Rmu_ssc0000442.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036270
rosa_rugosa	Rorug05G0218000
rosa_samantha	Rh5AG300800 Rh5BG307600 Rh5DG317700
rosa_wichuraiana	Rw5G027830 Rw5G027870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	97
AccB1I	GGYRCC	2 cut(s)	9, 264
AciI	CCGC	4 cut(s)	66, 78, 296, 508
AclWI	GGATC	1 cut(s)	503
AcoI	YGGCCR	1 cut(s)	46
AfaI	GTAC	2 cut(s)	355, 584
AfiI	CCNNNNNNNGG	5 cut(s)	180, 181, 283, 441, 551
AgsI	TTSAA	1 cut(s)	347
AjnI	CCWGG	2 cut(s)	43, 549
AluBI	AGCT	1 cut(s)	404
AluI	AGCT	1 cut(s)	404
AlwI	GGATC	1 cut(s)	503
AlwNI	CAGNNNCTG	1 cut(s)	517
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	3 cut(s)	86, 401, 517
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	2 cut(s)	62, 458
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	423
AvaII	GGWCC	2 cut(s)	62, 458
BaeGI	GKGCMC	1 cut(s)	267
BalI	TGGCCA	1 cut(s)	48
BanI	GGYRCC	2 cut(s)	9, 264
BbvI	GCAGC	3 cut(s)	73, 413, 504
BccI	CCATC	1 cut(s)	233
BceAI	ACGGC	1 cut(s)	565
BciT130I	CCWGG	2 cut(s)	45, 551
BcnI	CCSGG	1 cut(s)	374
BisI	GCNGC	5 cut(s)	78, 87, 297, 402, 518
BlsI	GCNGC	5 cut(s)	79, 88, 298, 403, 519
BmcAI	AGTACT	1 cut(s)	355
Bme1390I	CCNGG	3 cut(s)	45, 374, 551
Bme18I	GGWCC	2 cut(s)	62, 458
BmgT120I	GGNCC	2 cut(s)	62, 458
BmiI	GGNNCC	5 cut(s)	11, 64, 171, 266, 460
BmrFI	CCNGG	3 cut(s)	45, 374, 551
BmrI	ACTGGG	1 cut(s)	190
BmsI	GCATC	4 cut(s)	98, 223, 252, 584
BmuI	ACTGGG	1 cut(s)	190
BpuMI	CCSGG	1 cut(s)	374
BsaJI	CCNNGG	3 cut(s)	465, 549, 550
Bsc4I	CCNNNNNNNGG	5 cut(s)	180, 181, 283, 441, 551
Bse1I	ACTGG	2 cut(s)	185, 590
BseBI	CCWGG	2 cut(s)	45, 551
BseDI	CCNNGG	3 cut(s)	465, 549, 550
BseGI	GGATG	2 cut(s)	129, 541
BseLI	CCNNNNNNNGG	5 cut(s)	180, 181, 283, 441, 551
BseMII	CTCAG	1 cut(s)	173
BseNI	ACTGG	2 cut(s)	185, 590
BseRI	GAGGAG	2 cut(s)	5, 221
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	3 cut(s)	73, 413, 504
BseYI	CCCAGC	2 cut(s)	268, 289
BshFI	GGCC	1 cut(s)	48
BshNI	GGYRCC	2 cut(s)	9, 264
BsiSI	CCGG	1 cut(s)	374
BslI	CCNNNNNNNGG	5 cut(s)	180, 181, 283, 441, 551
BsmI	GAATGC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	162, 495
BspACI	CCGC	4 cut(s)	66, 78, 296, 508
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	5 cut(s)	11, 64, 171, 266, 460
BspPI	GGATC	1 cut(s)	503
BspT107I	GGYRCC	2 cut(s)	9, 264
BsrI	ACTGG	2 cut(s)	185, 590
BssECI	CCNNGG	3 cut(s)	465, 549, 550
BssMI	GATC	2 cut(s)	162, 495
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	2 cut(s)	45, 551
Bst4CI	ACNGT	1 cut(s)	323
BstC8I	GCNNGC	2 cut(s)	75, 215
BstDEI	CTNAG	3 cut(s)	159, 247, 440
BstEII	GGTNACC	1 cut(s)	429
BstENI	CCTNNNNNAGG	1 cut(s)	281
BstF5I	GGATG	2 cut(s)	129, 541
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	2 cut(s)	165, 498
BstMBI	GATC	2 cut(s)	162, 495
BstMWI	GCNNNNNNNGC	5 cut(s)	74, 83, 86, 95, 219
BstNI	CCWGG	2 cut(s)	45, 551
BstPI	GGTNACC	1 cut(s)	429
BstSCI	CCNGG	3 cut(s)	43, 372, 549
BstSLI	GKGCMC	1 cut(s)	267
BstV1I	GCAGC	3 cut(s)	73, 413, 504
BstX2I	RGATCY	1 cut(s)	495
BstYI	RGATCY	1 cut(s)	495
BsuRI	GGCC	1 cut(s)	48
BtgZI	GCGATG	1 cut(s)	561
BtsCI	GGATG	2 cut(s)	129, 541
BtsIMutI	CAGTG	1 cut(s)	329
Cac8I	GCNNGC	2 cut(s)	75, 215
CaiI	CAGNNNCTG	1 cut(s)	517
CfoI	GCGC	1 cut(s)	98
Cfr13I	GGNCC	2 cut(s)	62, 458
Csp6I	GTAC	2 cut(s)	354, 583
CviAII	CATG	2 cut(s)	50, 119
CviQI	GTAC	2 cut(s)	354, 583
DdeI	CTNAG	3 cut(s)	159, 247, 440
DpnI	GATC	2 cut(s)	164, 497
DpnII	GATC	2 cut(s)	162, 495
EaeI	YGGCCR	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	465
Eco47I	GGWCC	2 cut(s)	62, 458
Eco91I	GGTNACC	1 cut(s)	429
EcoNI	CCTNNNNNAGG	1 cut(s)	281
EcoO109I	RGGNCCY	2 cut(s)	62, 458
EcoO65I	GGTNACC	1 cut(s)	429
EcoRII	CCWGG	2 cut(s)	43, 549
EcoT14I	CCWWGG	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	2 cut(s)	53, 122
FatI	CATG	2 cut(s)	49, 118
FauI	CCCGC	1 cut(s)	73
FauNDI	CATATG	1 cut(s)	100
Fnu4HI	GCNGC	5 cut(s)	78, 87, 297, 402, 518
FokI	GGATG	2 cut(s)	136, 528
Fsp4HI	GCNGC	5 cut(s)	78, 87, 297, 402, 518
FspI	TGCGCA	1 cut(s)	97
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	5 cut(s)	78, 87, 297, 402, 518
GsaI	CCCAGC	2 cut(s)	272, 293
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	1 cut(s)	374
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	2 cut(s)	53, 122
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HinfI	GANTC	3 cut(s)	155, 484, 558
HpaII	CCGG	1 cut(s)	374
HphI	GGTGA	1 cut(s)	423
Hpy166II	GTNNAC	2 cut(s)	505, 568
Hpy188I	TCNGA	4 cut(s)	162, 392, 483, 489
Hpy188III	TCNNGA	2 cut(s)	55, 456
Hpy8I	GTNNAC	2 cut(s)	505, 568
Hpy99I	CGWCG	1 cut(s)	420
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4V	TGCA	4 cut(s)	89, 236, 401, 520
HpyF10VI	GCNNNNNNNGC	5 cut(s)	74, 83, 86, 95, 219
HpyF3I	CTNAG	3 cut(s)	159, 247, 440
Hsp92II	CATG	2 cut(s)	53, 122
HspAI	GCGC	1 cut(s)	96
Kzo9I	GATC	2 cut(s)	162, 495
LmnI	GCTCC	1 cut(s)	175
Lsp1109I	GCAGC	3 cut(s)	73, 413, 504
LweI	GCATC	4 cut(s)	98, 223, 252, 584
MaeIII	GTNAC	1 cut(s)	429
MalI	GATC	2 cut(s)	164, 497
MboI	GATC	2 cut(s)	162, 495
MboII	GAAGA	1 cut(s)	359
MflI	RGATCY	1 cut(s)	495
MhlI	GDGCHC	1 cut(s)	267
MlsI	TGGCCA	1 cut(s)	48
MluCI	AATT	1 cut(s)	311
MluNI	TGGCCA	1 cut(s)	48
Mox20I	TGGCCA	1 cut(s)	48
MscI	TGGCCA	1 cut(s)	48
Msp20I	TGGCCA	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	1 cut(s)	374
MspR9I	CCNGG	3 cut(s)	45, 374, 551
Mva1269I	GAATGC	1 cut(s)	35
MvaI	CCWGG	2 cut(s)	45, 551
MwoI	GCNNNNNNNGC	5 cut(s)	74, 83, 86, 95, 219
NciI	CCSGG	1 cut(s)	374
NdeI	CATATG	1 cut(s)	100
NdeII	GATC	2 cut(s)	162, 495
NlaIII	CATG	2 cut(s)	53, 122
NlaIV	GGNNCC	5 cut(s)	11, 64, 171, 266, 460
NmuCI	GTSAC	1 cut(s)	429
NsbI	TGCGCA	1 cut(s)	97
PasI	CCCWGGG	1 cut(s)	550
PctI	GAATGC	1 cut(s)	35
PfeI	GAWTC	3 cut(s)	155, 484, 558
PkrI	GCNGC	5 cut(s)	79, 88, 298, 403, 519
PpuMI	RGGWCCY	2 cut(s)	62, 458
Psp5II	RGGWCCY	2 cut(s)	62, 458
Psp6I	CCWGG	2 cut(s)	43, 549
PspEI	GGTNACC	1 cut(s)	429
PspFI	CCCAGC	2 cut(s)	268, 289
PspGI	CCWGG	2 cut(s)	43, 549
PspN4I	GGNNCC	5 cut(s)	11, 64, 171, 266, 460
PspPI	GGNCC	2 cut(s)	62, 458
PspPPI	RGGWCCY	2 cut(s)	62, 458
PstNI	CAGNNNCTG	1 cut(s)	517
PsuI	RGATCY	1 cut(s)	495
RsaI	GTAC	2 cut(s)	355, 584
RsaNI	GTAC	2 cut(s)	354, 583
SatI	GCNGC	5 cut(s)	78, 87, 297, 402, 518
Sau3AI	GATC	2 cut(s)	162, 495
Sau96I	GGNCC	2 cut(s)	62, 458
ScaI	AGTACT	1 cut(s)	355
ScrFI	CCNGG	3 cut(s)	45, 374, 551
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	4 cut(s)	15, 279, 406, 431
SfaNI	GCATC	4 cut(s)	98, 223, 252, 584
SinI	GGWCC	2 cut(s)	62, 458
Sse9I	AATT	1 cut(s)	311
SsiI	CCGC	4 cut(s)	66, 78, 296, 508
StyD4I	CCNGG	3 cut(s)	43, 372, 549
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	1 cut(s)	323
TasI	AATT	1 cut(s)	311
TatI	WGTACW	1 cut(s)	353
TauI	GCSGC	2 cut(s)	80, 299
TfiI	GAWTC	3 cut(s)	155, 484, 558
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	1 cut(s)	429
TseI	GCWGC	3 cut(s)	86, 401, 517
Tsp45I	GTSAC	1 cut(s)	429
TspDTI	ATGAA	4 cut(s)	28, 465, 530, 550
TspRI	CASTG	1 cut(s)	336
VpaK11BI	GGWCC	2 cut(s)	62, 458
XagI	CCTNNNNNAGG	1 cut(s)	281
ZrmI	AGTACT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.