Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0018614

Physical Location & Seq

Genomic Coordinates Forward (+)

40869577 .. 40870308

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG317700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAGACCTATATATTTCGTAGTTGAAATCAACATAGGCATACCCACCCAGAATTTCTTCAGTCTGGCCCTTGATATAAAAAATCCATTCACATGGGTTGGCACCTCCTCCAAGCCAAACATCTCGCATTCATTCCTGGCCATGCCAGGAAAGGACCCGCTGTGCCTGCCGCCTCTGCTGCATCTTGCGCATATGACTTTGGTTATGCTCATGGGATGTGGGTTTGATTATTTCTTGGGCATAGAATCTCAGATCAAGGCTCCCCTTGGCTGGGGGATTTTTACGGACGAACGGGAGGAGGGCGTGCGAGGCAGTAGTAGAGATGCAGATGGCATCTTAGGGTTGGGAGTAGGGCACCCAGCCCACCTGTTAGAGGGGCTGGGGGCGGCAACTCTTTATCAATTCTCTTACTGTTTGCCACTGAACTATGTGATTGAAGAAAGTACTGACCAGCAACGCCACCCGGCTACTCTAAACTTCGGAGAAAATGCAGCTATCAGGGGTCATCGGGCTGTGAGAACGCCCATTCTAAGGCTGAAAGGGTCAGGACCCACCAAGGATTTTTCATATCTGAATCGGACAGGGATCTATGTGAACCGCCATAGGCTGCATATAAACACACAAGTCTTTCATCCCTCCCAGGGAGGATTCATTGTGGACACAGGTGAGGATCGATTATCAATTCCCTTTTATTATATTCTAGCATACTTTTTCCTTTTGGTACAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005576 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Asp TAXi_C TAXi_N

Protein Analysis

243

Amino Acids

27.12

Weight (kDa)

6.54

Isoelectric Point (pI)

34.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018614)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0044761
rosa_laevigata	RLG00000034297
rosa_multiflora	Rmu_ssc0000442.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036270
rosa_rugosa	Rorug05G0218000
rosa_samantha	Rh5AG300800 Rh5BG307600 Rh5DG317700
rosa_wichuraiana	Rw5G027830 Rw5G027870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	189
AccB1I	GGYRCC	2 cut(s)	101, 354
AciI	CCGC	4 cut(s)	158, 170, 386, 598
AclWI	GGATC	2 cut(s)	593, 678
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	52
AcuI	CTGAAG	1 cut(s)	43
AfaI	GTAC	2 cut(s)	445, 723
AfiI	CCNNNNNNNGG	5 cut(s)	270, 271, 373, 531, 641
AgsI	TTSAA	2 cut(s)	26, 437
AjnI	CCWGG	3 cut(s)	135, 145, 639
AluBI	AGCT	1 cut(s)	494
AluI	AGCT	1 cut(s)	494
AlwI	GGATC	2 cut(s)	593, 678
AoxI	GGCC	2 cut(s)	66, 138
ApeKI	GCWGC	3 cut(s)	178, 491, 607
ApoI	RAATTY	1 cut(s)	52
Asp700I	GAANNNNTTC	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	3 cut(s)	67, 154, 548
AsuC2I	CCSGG	1 cut(s)	464
AsuHPI	GGTGA	1 cut(s)	677
AvaII	GGWCC	2 cut(s)	154, 548
BaeGI	GKGCMC	1 cut(s)	357
BalI	TGGCCA	1 cut(s)	140
BanI	GGYRCC	2 cut(s)	101, 354
BbvI	GCAGC	3 cut(s)	165, 503, 594
BccI	CCATC	1 cut(s)	323
BciT130I	CCWGG	3 cut(s)	137, 147, 641
BcnI	CCSGG	1 cut(s)	464
BfaI	CTAG	1 cut(s)	701
BisI	GCNGC	5 cut(s)	170, 179, 387, 492, 608
BlsI	GCNGC	5 cut(s)	171, 180, 388, 493, 609
BmcAI	AGTACT	1 cut(s)	445
Bme1390I	CCNGG	4 cut(s)	137, 147, 464, 641
Bme18I	GGWCC	2 cut(s)	154, 548
BmgT120I	GGNCC	3 cut(s)	67, 154, 548
BmiI	GGNNCC	5 cut(s)	103, 156, 261, 356, 550
BmrFI	CCNGG	4 cut(s)	137, 147, 464, 641
BmsI	GCATC	3 cut(s)	190, 313, 342
BpuMI	CCSGG	1 cut(s)	464
Bsa29I	ATCGAT	1 cut(s)	673
BsaJI	CCNNGG	4 cut(s)	265, 555, 639, 640
Bsc4I	CCNNNNNNNGG	5 cut(s)	270, 271, 373, 531, 641
BseBI	CCWGG	3 cut(s)	137, 147, 641
BseCI	ATCGAT	1 cut(s)	673
BseDI	CCNNGG	4 cut(s)	265, 555, 639, 640
BseGI	GGATG	2 cut(s)	221, 631
BseLI	CCNNNNNNNGG	5 cut(s)	270, 271, 373, 531, 641
BseMII	CTCAG	1 cut(s)	263
BseRI	GAGGAG	2 cut(s)	97, 311
BseSI	GKGCMC	1 cut(s)	357
BseXI	GCAGC	3 cut(s)	165, 503, 594
BseYI	CCCAGC	3 cut(s)	270, 358, 379
BshFI	GGCC	2 cut(s)	68, 140
BshNI	GGYRCC	2 cut(s)	101, 354
BshVI	ATCGAT	1 cut(s)	673
BsiSI	CCGG	1 cut(s)	464
BslI	CCNNNNNNNGG	5 cut(s)	270, 271, 373, 531, 641
BsmI	GAATGC	1 cut(s)	127
BsnI	GGCC	2 cut(s)	68, 140
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	3 cut(s)	252, 585, 670
BspACI	CCGC	4 cut(s)	158, 170, 386, 598
BspANI	GGCC	2 cut(s)	68, 140
BspCNI	CTCAG	1 cut(s)	262
BspDI	ATCGAT	1 cut(s)	673
BspLI	GGNNCC	5 cut(s)	103, 156, 261, 356, 550
BspPI	GGATC	2 cut(s)	593, 678
BspT107I	GGYRCC	2 cut(s)	101, 354
BssECI	CCNNGG	4 cut(s)	265, 555, 639, 640
BssMI	GATC	3 cut(s)	252, 585, 670
BssT1I	CCWWGG	2 cut(s)	265, 555
Bst2UI	CCWGG	3 cut(s)	137, 147, 641
Bst4CI	ACNGT	1 cut(s)	413
BstC8I	GCNNGC	2 cut(s)	167, 305
BstDEI	CTNAG	3 cut(s)	249, 337, 530
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstF5I	GGATG	2 cut(s)	221, 631
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	3 cut(s)	255, 588, 673
BstMBI	GATC	3 cut(s)	252, 585, 670
BstMWI	GCNNNNNNNGC	5 cut(s)	166, 175, 178, 187, 309
BstNI	CCWGG	3 cut(s)	137, 147, 641
BstSCI	CCNGG	4 cut(s)	135, 145, 462, 639
BstSLI	GKGCMC	1 cut(s)	357
BstV1I	GCAGC	3 cut(s)	165, 503, 594
BstX2I	RGATCY	1 cut(s)	585
BstXI	CCANNNNNNTGG	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	585
Bsu15I	ATCGAT	1 cut(s)	673
BsuRI	GGCC	2 cut(s)	68, 140
BsuTUI	ATCGAT	1 cut(s)	673
BtsCI	GGATG	2 cut(s)	221, 631
BtsIMutI	CAGTG	1 cut(s)	419
Cac8I	GCNNGC	2 cut(s)	167, 305
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	3 cut(s)	67, 154, 548
ClaI	ATCGAT	1 cut(s)	673
Csp6I	GTAC	2 cut(s)	444, 722
CviAII	CATG	3 cut(s)	93, 142, 211
CviQI	GTAC	2 cut(s)	444, 722
DdeI	CTNAG	3 cut(s)	249, 337, 530
DpnI	GATC	3 cut(s)	254, 587, 672
DpnII	GATC	3 cut(s)	252, 585, 670
EaeI	YGGCCR	1 cut(s)	138
Eco130I	CCWWGG	2 cut(s)	265, 555
Eco47I	GGWCC	2 cut(s)	154, 548
Eco57I	CTGAAG	1 cut(s)	43
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoO109I	RGGNCCY	2 cut(s)	154, 548
EcoRII	CCWGG	3 cut(s)	135, 145, 639
EcoT14I	CCWWGG	2 cut(s)	265, 555
ErhI	CCWWGG	2 cut(s)	265, 555
FaeI	CATG	3 cut(s)	96, 145, 214
FatI	CATG	3 cut(s)	92, 141, 210
FauI	CCCGC	1 cut(s)	165
FauNDI	CATATG	1 cut(s)	192
Fnu4HI	GCNGC	5 cut(s)	170, 179, 387, 492, 608
FokI	GGATG	2 cut(s)	228, 618
Fsp4HI	GCNGC	5 cut(s)	170, 179, 387, 492, 608
FspBI	CTAG	1 cut(s)	701
FspI	TGCGCA	1 cut(s)	189
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	5 cut(s)	170, 179, 387, 492, 608
GsaI	CCCAGC	3 cut(s)	274, 362, 383
HaeIII	GGCC	2 cut(s)	68, 140
HapII	CCGG	1 cut(s)	464
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	3 cut(s)	96, 145, 214
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HinfI	GANTC	3 cut(s)	245, 574, 648
HpaII	CCGG	1 cut(s)	464
HphI	GGTGA	1 cut(s)	677
Hpy166II	GTNNAC	2 cut(s)	595, 658
Hpy188I	TCNGA	4 cut(s)	252, 482, 573, 579
Hpy188III	TCNNGA	1 cut(s)	546
Hpy8I	GTNNAC	2 cut(s)	595, 658
HpyCH4III	ACNGT	1 cut(s)	413
HpyCH4V	TGCA	4 cut(s)	181, 326, 491, 610
HpyF10VI	GCNNNNNNNGC	5 cut(s)	166, 175, 178, 187, 309
HpyF3I	CTNAG	3 cut(s)	249, 337, 530
Hsp92II	CATG	3 cut(s)	96, 145, 214
HspAI	GCGC	1 cut(s)	188
Kzo9I	GATC	3 cut(s)	252, 585, 670
LmnI	GCTCC	1 cut(s)	265
Lsp1109I	GCAGC	3 cut(s)	165, 503, 594
LweI	GCATC	3 cut(s)	190, 313, 342
MaeI	CTAG	1 cut(s)	701
MalI	GATC	3 cut(s)	254, 587, 672
MboI	GATC	3 cut(s)	252, 585, 670
MboII	GAAGA	2 cut(s)	49, 449
MflI	RGATCY	1 cut(s)	585
MhlI	GDGCHC	1 cut(s)	357
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	3 cut(s)	52, 401, 681
MluNI	TGGCCA	1 cut(s)	140
Mox20I	TGGCCA	1 cut(s)	140
MroXI	GAANNNNTTC	1 cut(s)	56
MscI	TGGCCA	1 cut(s)	140
MslI	CAYNNNNRTG	1 cut(s)	91
Msp20I	TGGCCA	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	160
MspI	CCGG	1 cut(s)	464
MspR9I	CCNGG	4 cut(s)	137, 147, 464, 641
Mva1269I	GAATGC	1 cut(s)	127
MvaI	CCWGG	3 cut(s)	137, 147, 641
MwoI	GCNNNNNNNGC	5 cut(s)	166, 175, 178, 187, 309
NciI	CCSGG	1 cut(s)	464
NdeI	CATATG	1 cut(s)	192
NdeII	GATC	3 cut(s)	252, 585, 670
NlaIII	CATG	3 cut(s)	96, 145, 214
NlaIV	GGNNCC	5 cut(s)	103, 156, 261, 356, 550
NsbI	TGCGCA	1 cut(s)	189
PasI	CCCWGGG	1 cut(s)	640
PctI	GAATGC	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	56
PfeI	GAWTC	3 cut(s)	245, 574, 648
PkrI	GCNGC	5 cut(s)	171, 180, 388, 493, 609
PpuMI	RGGWCCY	2 cut(s)	154, 548
Psp5II	RGGWCCY	2 cut(s)	154, 548
Psp6I	CCWGG	3 cut(s)	135, 145, 639
PspFI	CCCAGC	3 cut(s)	270, 358, 379
PspGI	CCWGG	3 cut(s)	135, 145, 639
PspN4I	GGNNCC	5 cut(s)	103, 156, 261, 356, 550
PspPI	GGNCC	3 cut(s)	67, 154, 548
PspPPI	RGGWCCY	2 cut(s)	154, 548
PsuI	RGATCY	1 cut(s)	585
RsaI	GTAC	2 cut(s)	445, 723
RsaNI	GTAC	2 cut(s)	444, 722
RseI	CAYNNNNRTG	1 cut(s)	91
SatI	GCNGC	5 cut(s)	170, 179, 387, 492, 608
Sau3AI	GATC	3 cut(s)	252, 585, 670
Sau96I	GGNCC	3 cut(s)	67, 154, 548
ScaI	AGTACT	1 cut(s)	445
ScrFI	CCNGG	4 cut(s)	137, 147, 464, 641
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	5 cut(s)	10, 107, 369, 496, 667
SfaNI	GCATC	3 cut(s)	190, 313, 342
SinI	GGWCC	2 cut(s)	154, 548
SmiMI	CAYNNNNRTG	1 cut(s)	91
Sse9I	AATT	3 cut(s)	52, 401, 681
SsiI	CCGC	4 cut(s)	158, 170, 386, 598
SspMI	CTAG	1 cut(s)	701
StyD4I	CCNGG	4 cut(s)	135, 145, 462, 639
StyI	CCWWGG	2 cut(s)	265, 555
TaaI	ACNGT	1 cut(s)	413
TaqI	TCGA	1 cut(s)	673
TasI	AATT	3 cut(s)	52, 401, 681
TatI	WGTACW	1 cut(s)	443
TauI	GCSGC	2 cut(s)	172, 389
TfiI	GAWTC	3 cut(s)	245, 574, 648
TscAI	CASTG	1 cut(s)	426
TseI	GCWGC	3 cut(s)	178, 491, 607
TspDTI	ATGAA	4 cut(s)	120, 555, 620, 640
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	1 cut(s)	426
VpaK11BI	GGWCC	2 cut(s)	154, 548
XagI	CCTNNNNNAGG	1 cut(s)	371
XapI	RAATTY	1 cut(s)	52
XmnI	GAANNNNTTC	1 cut(s)	56
XspI	CTAG	1 cut(s)	701
ZrmI	AGTACT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.