Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0018561

Physical Location & Seq

Genomic Coordinates Reverse (-)

34497342 .. 34524449

Gene Structure 27108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG281200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAGCTCGATGGAGAATCAGAAGAGGAGGATCAGTATCATCCTTGTTCTTCTTTCATGGATTTTCATGGCGGCCGCCATGGCAGCTGAAAACGCATCAACAATCCCAGTGAACGTGGGAGTTGTTGTAGACCTTAATGAACCGAGTGGGAAGATGTATTTGAGTTGCATAGAAATGGCGCTCTCAGACTTCTATGCTTCCCATGCTCAATACGAGACTAGGGTCGTTTTGAACACCAGTAACTCCCACGAAGATGTCGTTGGTGCAGCTGACGCAGGATGGGATGCACATCAGGCAACTCCTACTTTTATGAAACTGTGCCATGATTATAATCATAATCAGAGTAGCAATCTAGAACGATGGAAGATGCTCCTCCGTACCCCATATTTGTATGATTCAAATGTCTCCAAATTCCCACTCTTTGCATCATCTTCACCATTTCGACAACTCAGGATGGTGCTTCATTGTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

157

Amino Acids

17.69

Weight (kDa)

6.27

Isoelectric Point (pI)

60.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018561)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0347231 RchiOBHm_Chr2g0148441
rosa_laevigata	RLG00000029050
rosa_roxburghii	Rroxscaffold_6G00419110
rosa_samantha	Rh2AG478400 Rh2CG464600 Rh2DG555200 Rh3CG254100 Rh5DG281200 Rh7DG158900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	330
AccI	GTMKAC	1 cut(s)	129
AciI	CCGC	2 cut(s)	71, 75
AclWI	GGATC	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	410
AfaI	GTAC	1 cut(s)	379
AgsI	TTSAA	2 cut(s)	232, 399
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	3 cut(s)	6, 86, 269
AluI	AGCT	3 cut(s)	6, 86, 269
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	209, 409
AlwI	GGATC	1 cut(s)	38
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	2 cut(s)	83, 266
ApoI	RAATTY	1 cut(s)	410
AspLEI	GCGC	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	426
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	95, 278
BccI	CCATC	4 cut(s)	4, 273, 354, 448
BcoDI	GTCTC	2 cut(s)	209, 409
BfaI	CTAG	2 cut(s)	219, 353
BfoI	RGCGCY	1 cut(s)	182
BglI	GCCNNNNNGGC	1 cut(s)	80
BisI	GCNGC	4 cut(s)	72, 75, 84, 267
BlsI	GCNGC	4 cut(s)	73, 76, 85, 268
BmrI	ACTGGG	1 cut(s)	101
BmsI	GCATC	4 cut(s)	104, 274, 357, 434
BmuI	ACTGGG	1 cut(s)	101
BoxI	GACNNNNGTC	1 cut(s)	221
BsaBI	GATNNNNATC	3 cut(s)	35, 288, 330
BsaJI	CCNNGG	1 cut(s)	78
BsaXI	ACNNNNNCTCC	4 cut(s)	19, 49, 111, 141
Bse1I	ACTGG	2 cut(s)	107, 237
Bse8I	GATNNNNATC	3 cut(s)	35, 288, 330
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	4 cut(s)	39, 284, 289, 459
BseJI	GATNNNNATC	3 cut(s)	35, 288, 330
BseMII	CTCAG	2 cut(s)	198, 463
BseNI	ACTGG	2 cut(s)	107, 237
BseRI	GAGGAG	2 cut(s)	40, 362
BseX3I	CGGCCG	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	95, 278
BsgI	GTGCAG	1 cut(s)	285
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	74
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	8
BsmAI	GTCTC	2 cut(s)	209, 409
BsnI	GGCC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	30
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	2 cut(s)	71, 75
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	2 cut(s)	197, 462
BspPI	GGATC	1 cut(s)	38
BsrI	ACTGG	2 cut(s)	107, 237
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	318
Bst6I	CTCTTC	1 cut(s)	17
BstDEI	CTNAG	2 cut(s)	184, 449
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	4 cut(s)	39, 284, 289, 459
BstH2I	RGCGCY	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	2 cut(s)	209, 409
BstMBI	GATC	1 cut(s)	30
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	6 cut(s)	80, 83, 92, 203, 272, 293
BstPAI	GACNNNNGTC	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	95, 278
BstZI	CGGCCG	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	74
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	4 cut(s)	39, 284, 289, 459
BtsIMutI	CAGTG	1 cut(s)	114
CciNI	GCGGCCGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	181
CseI	GACGC	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	378
CviAII	CATG	5 cut(s)	57, 67, 79, 203, 323
CviJI	RGCY	4 cut(s)	6, 74, 86, 269
CviKI_1	RGCY	4 cut(s)	6, 74, 86, 269
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	2 cut(s)	184, 449
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
EaeI	YGGCCR	1 cut(s)	72
EagI	CGGCCG	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Ecl136II	GAGCTC	1 cut(s)	6
EclXI	CGGCCG	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	8
Eco52I	CGGCCG	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	5 cut(s)	60, 70, 82, 206, 326
FatI	CATG	5 cut(s)	56, 66, 78, 202, 322
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	4 cut(s)	72, 75, 84, 267
FokI	GGATG	4 cut(s)	26, 291, 296, 466
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	4 cut(s)	72, 75, 84, 267
FspBI	CTAG	2 cut(s)	219, 353
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	4 cut(s)	72, 75, 84, 267
HaeII	RGCGCY	1 cut(s)	182
HaeIII	GGCC	1 cut(s)	74
HgaI	GACGC	1 cut(s)	281
HhaI	GCGC	1 cut(s)	181
Hin1II	CATG	5 cut(s)	60, 70, 82, 206, 326
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HinfI	GANTC	2 cut(s)	16, 395
HphI	GGTGA	1 cut(s)	426
Hpy166II	GTNNAC	2 cut(s)	112, 130
Hpy188I	TCNGA	3 cut(s)	21, 187, 342
Hpy188III	TCNNGA	2 cut(s)	353, 451
Hpy8I	GTNNAC	2 cut(s)	112, 130
HpyCH4III	ACNGT	1 cut(s)	318
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	4 cut(s)	168, 266, 287, 425
HpyF10VI	GCNNNNNNNGC	6 cut(s)	80, 83, 92, 203, 272, 293
HpyF3I	CTNAG	2 cut(s)	184, 449
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	5 cut(s)	60, 70, 82, 206, 326
HspAI	GCGC	1 cut(s)	179
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	375
LpnPI	CCDG	5 cut(s)	120, 250, 261, 278, 436
Lsp1109I	GCAGC	2 cut(s)	95, 278
LweI	GCATC	4 cut(s)	104, 274, 357, 434
MaeI	CTAG	2 cut(s)	219, 353
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	6 cut(s)	34, 41, 163, 263, 376, 423
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	410
MnlI	CCTC	3 cut(s)	18, 21, 383
MseI	TTAA	1 cut(s)	135
MslI	CAYNNNNRTG	2 cut(s)	173, 252
MspA1I	CMGCKG	2 cut(s)	86, 269
MwoI	GCNNNNNNNGC	6 cut(s)	80, 83, 92, 203, 272, 293
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	5 cut(s)	60, 70, 82, 206, 326
NotI	GCGGCCGC	1 cut(s)	72
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	16, 395
PkrI	GCNGC	4 cut(s)	73, 76, 85, 268
PshAI	GACNNNNGTC	1 cut(s)	221
PsiI	TTATAA	1 cut(s)	330
Psp124BI	GAGCTC	1 cut(s)	8
PvuII	CAGCTG	2 cut(s)	86, 269
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
RseI	CAYNNNNRTG	2 cut(s)	173, 252
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	4 cut(s)	72, 75, 84, 267
Sau3AI	GATC	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	5 cut(s)	8, 88, 117, 135, 271
SfaNI	GCATC	4 cut(s)	104, 274, 357, 434
SmiMI	CAYNNNNRTG	2 cut(s)	173, 252
Sse9I	AATT	1 cut(s)	410
SsiI	CCGC	2 cut(s)	71, 75
SspMI	CTAG	2 cut(s)	219, 353
SstI	GAGCTC	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	318
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	2 cut(s)	8, 442
TasI	AATT	1 cut(s)	410
TauI	GCSGC	2 cut(s)	74, 77
TfiI	GAWTC	2 cut(s)	16, 395
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	114
TseI	GCWGC	2 cut(s)	83, 266
TspDTI	ATGAA	5 cut(s)	45, 55, 153, 326, 452
TspGWI	ACGGA	1 cut(s)	365
TspRI	CASTG	1 cut(s)	114
XapI	RAATTY	1 cut(s)	410
XbaI	TCTAGA	1 cut(s)	352
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	2 cut(s)	219, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.