Core-2/I-Branching enzyme
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G22070 |
| fragaria_vesca | FvH4_2g09440 |
| malus_domestica | MD03G1158600.v1.1 |
| prunus_persica | Prupe.6G146600_v2.0.a1 Prupe.6G146600_v2.0.a1 |
| pyrus_communis | pycom03g11090 |
| rosa_chinensis | RchiOBHm_Chr5g0048971 |
| rosa_laevigata | RLG00000034575 |
| rosa_multiflora | Rmu_sc0004058.1_g000017 |
| rosa_rugosa | Rorug05G0241600 |
| rosa_samantha | Rh5AG321800 Rh5BG332000 Rh5CG357300 Rh5DG343800 |
| rosa_wichuraiana | Rw5G030370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 853 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 648 |
| AccI | GTMKAC | 1 cut(s) | 513 |
| AccII | CGCG | 4 cut(s) | 147, 354, 437, 742 |
| AccIII | TCCGGA | 1 cut(s) | 868 |
| AclWI | GGATC | 6 cut(s) | 150, 308, 440, 777, 860, 873 |
| AcoI | YGGCCR | 1 cut(s) | 450 |
| AcsI | RAATTY | 2 cut(s) | 788, 948 |
| AcuI | CTGAAG | 2 cut(s) | 617, 785 |
| AcyI | GRCGYC | 1 cut(s) | 573 |
| AfaI | GTAC | 6 cut(s) | 21, 482, 608, 659, 677, 880 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 255, 343, 375, 648, 672, 712, 978 |
| AgsI | TTSAA | 2 cut(s) | 793, 968 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 599 |
| AjnI | CCWGG | 3 cut(s) | 129, 665, 1029 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 152, 184, 197, 229, 446, 478, 960, 992 |
| AluBI | AGCT | 2 cut(s) | 615, 778 |
| AluI | AGCT | 2 cut(s) | 615, 778 |
| Alw26I | GTCTC | 1 cut(s) | 650 |
| AlwI | GGATC | 6 cut(s) | 150, 308, 440, 777, 860, 873 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 648, 778 |
| Ama87I | CYCGRG | 2 cut(s) | 341, 897 |
| Aor13HI | TCCGGA | 1 cut(s) | 868 |
| AoxI | GGCC | 3 cut(s) | 132, 450, 1042 |
| ApeKI | GCWGC | 1 cut(s) | 775 |
| ApoI | RAATTY | 2 cut(s) | 788, 948 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 227, 259 |
| AspLEI | GCGC | 3 cut(s) | 149, 439, 744 |
| AspS9I | GGNCC | 3 cut(s) | 133, 694, 913 |
| AsuC2I | CCSGG | 7 cut(s) | 342, 343, 713, 827, 898, 899, 1005 |
| AsuHPI | GGTGA | 3 cut(s) | 163, 217, 322 |
| AvaI | CYCGRG | 2 cut(s) | 341, 897 |
| AvaII | GGWCC | 2 cut(s) | 694, 913 |
| BamHI | GGATCC | 1 cut(s) | 865 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 590, 599, 622, 631 |
| BbvI | GCAGC | 1 cut(s) | 787 |
| BccI | CCATC | 5 cut(s) | 53, 341, 583, 853, 866 |
| BceAI | ACGGC | 4 cut(s) | 134, 452, 729, 784 |
| BciT130I | CCWGG | 3 cut(s) | 131, 667, 1031 |
| BcnI | CCSGG | 7 cut(s) | 342, 343, 713, 827, 898, 899, 1005 |
| BcoDI | GTCTC | 1 cut(s) | 650 |
| BisI | GCNGC | 4 cut(s) | 111, 435, 663, 776 |
| BlsI | GCNGC | 4 cut(s) | 112, 436, 664, 777 |
| BmcAI | AGTACT | 1 cut(s) | 482 |
| Bme18I | GGWCC | 2 cut(s) | 694, 913 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 599 |
| BmeT110I | CYCGRG | 2 cut(s) | 341, 897 |
| BmgT120I | GGNCC | 3 cut(s) | 133, 694, 913 |
| BmiI | GGNNCC | 3 cut(s) | 190, 696, 867 |
| BmrI | ACTGGG | 1 cut(s) | 472 |
| BmsI | GCATC | 1 cut(s) | 675 |
| BmuI | ACTGGG | 1 cut(s) | 472 |
| BpuMI | CCSGG | 7 cut(s) | 342, 343, 713, 827, 898, 899, 1005 |
| BsaBI | GATNNNNATC | 1 cut(s) | 160 |
| BsaHI | GRCGYC | 1 cut(s) | 573 |
| BsaJI | CCNNGG | 6 cut(s) | 184, 341, 342, 666, 897, 1029 |
| BsaWI | WCCGGW | 1 cut(s) | 868 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 322, 352, 374, 404, 803, 833 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 255, 343, 375, 648, 672, 712, 978 |
| Bse1I | ACTGG | 4 cut(s) | 478, 642, 706, 1045 |
| Bse8I | GATNNNNATC | 1 cut(s) | 160 |
| BseAI | TCCGGA | 1 cut(s) | 868 |
| BseBI | CCWGG | 3 cut(s) | 131, 667, 1031 |
| BseDI | CCNNGG | 6 cut(s) | 184, 341, 342, 666, 897, 1029 |
| BseGI | GGATG | 4 cut(s) | 45, 333, 594, 877 |
| BseJI | GATNNNNATC | 1 cut(s) | 160 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 255, 343, 375, 648, 672, 712, 978 |
| BseMII | CTCAG | 1 cut(s) | 1001 |
| BseNI | ACTGG | 4 cut(s) | 478, 642, 706, 1045 |
| BseRI | GAGGAG | 5 cut(s) | 26, 29, 44, 53, 845 |
| BseXI | GCAGC | 1 cut(s) | 787 |
| Bsh1236I | CGCG | 4 cut(s) | 147, 354, 437, 742 |
| Bsh1285I | CGRYCG | 1 cut(s) | 358 |
| BshFI | GGCC | 3 cut(s) | 134, 452, 1044 |
| BsiEI | CGRYCG | 1 cut(s) | 358 |
| BsiHKCI | CYCGRG | 2 cut(s) | 341, 897 |
| BsiSI | CCGG | 9 cut(s) | 342, 449, 689, 712, 827, 869, 898, 957, 1004 |
| BslFI | GGGAC | 5 cut(s) | 473, 535, 606, 680, 1020 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 255, 343, 375, 648, 672, 712, 978 |
| BsmAI | GTCTC | 1 cut(s) | 650 |
| BsmFI | GGGAC | 5 cut(s) | 473, 535, 606, 680, 1020 |
| BsmI | GAATGC | 1 cut(s) | 167 |
| BsnI | GGCC | 3 cut(s) | 134, 452, 1044 |
| BsoBI | CYCGRG | 2 cut(s) | 341, 897 |
| Bsp13I | TCCGGA | 1 cut(s) | 868 |
| Bsp143I | GATC | 6 cut(s) | 155, 313, 402, 445, 769, 865 |
| BspANI | GGCC | 3 cut(s) | 134, 452, 1044 |
| BspCNI | CTCAG | 1 cut(s) | 1002 |
| BspEI | TCCGGA | 1 cut(s) | 868 |
| BspFNI | CGCG | 4 cut(s) | 147, 354, 437, 742 |
| BspLI | GGNNCC | 3 cut(s) | 190, 696, 867 |
| BspPI | GGATC | 6 cut(s) | 150, 308, 440, 777, 860, 873 |
| BsrI | ACTGG | 4 cut(s) | 478, 642, 706, 1045 |
| BssECI | CCNNGG | 6 cut(s) | 184, 341, 342, 666, 897, 1029 |
| BssMI | GATC | 6 cut(s) | 155, 313, 402, 445, 769, 865 |
| BssNI | GRCGYC | 1 cut(s) | 573 |
| Bst2UI | CCWGG | 3 cut(s) | 131, 667, 1031 |
| Bst4CI | ACNGT | 3 cut(s) | 359, 386, 913 |
| Bst6I | CTCTTC | 4 cut(s) | 62, 143, 224, 530 |
| BstACI | GRCGYC | 1 cut(s) | 573 |
| BstC8I | GCNNGC | 1 cut(s) | 426 |
| BstDEI | CTNAG | 2 cut(s) | 372, 1010 |
| BstF5I | GGATG | 4 cut(s) | 45, 333, 594, 877 |
| BstFNI | CGCG | 4 cut(s) | 147, 354, 437, 742 |
| BstHHI | GCGC | 3 cut(s) | 149, 439, 744 |
| BstKTI | GATC | 6 cut(s) | 158, 316, 405, 448, 772, 868 |
| BstMAI | GTCTC | 1 cut(s) | 650 |
| BstMBI | GATC | 6 cut(s) | 155, 313, 402, 445, 769, 865 |
| BstMCI | CGRYCG | 1 cut(s) | 358 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 434, 781 |
| BstNI | CCWGG | 3 cut(s) | 131, 667, 1031 |
| BstUI | CGCG | 4 cut(s) | 147, 354, 437, 742 |
| BstV1I | GCAGC | 1 cut(s) | 787 |
| BstX2I | RGATCY | 1 cut(s) | 865 |
| BstYI | RGATCY | 1 cut(s) | 865 |
| BsuRI | GGCC | 3 cut(s) | 134, 452, 1044 |
| BtgZI | GCGATG | 1 cut(s) | 349 |
| BtsCI | GGATG | 4 cut(s) | 45, 333, 594, 877 |
| Cac8I | GCNNGC | 1 cut(s) | 426 |
| CaiI | CAGNNNCTG | 2 cut(s) | 648, 778 |
| CfoI | GCGC | 3 cut(s) | 149, 439, 744 |
| Cfr13I | GGNCC | 3 cut(s) | 133, 694, 913 |
| Cfr9I | CCCGGG | 2 cut(s) | 341, 897 |
| CseI | GACGC | 3 cut(s) | 475, 581, 856 |
| Csp6I | GTAC | 6 cut(s) | 20, 481, 607, 658, 676, 879 |
| CviAII | CATG | 1 cut(s) | 682 |
| CviJI | RGCY | 6 cut(s) | 134, 202, 452, 615, 778, 1044 |
| CviKI_1 | RGCY | 6 cut(s) | 134, 202, 452, 615, 778, 1044 |
| CviQI | GTAC | 6 cut(s) | 20, 481, 607, 658, 676, 879 |
| DdeI | CTNAG | 2 cut(s) | 372, 1010 |
| DpnI | GATC | 6 cut(s) | 157, 315, 404, 447, 771, 867 |
| DpnII | GATC | 6 cut(s) | 155, 313, 402, 445, 769, 865 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 853 |
| DriI | GACNNNNNGTC | 1 cut(s) | 599 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 853 |
| EaeI | YGGCCR | 1 cut(s) | 450 |
| Eam1104I | CTCTTC | 4 cut(s) | 62, 143, 224, 530 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 599 |
| EarI | CTCTTC | 4 cut(s) | 62, 143, 224, 530 |
| EciI | GGCGGA | 3 cut(s) | 397, 523, 878 |
| Eco47I | GGWCC | 2 cut(s) | 694, 913 |
| Eco57I | CTGAAG | 2 cut(s) | 617, 785 |
| Eco88I | CYCGRG | 2 cut(s) | 341, 897 |
| EcoO109I | RGGNCCY | 2 cut(s) | 133, 694 |
| EcoRII | CCWGG | 3 cut(s) | 129, 665, 1029 |
| FaeI | CATG | 1 cut(s) | 685 |
| FaiI | YATR | 2 cut(s) | 683, 888 |
| FaqI | GGGAC | 5 cut(s) | 473, 535, 606, 680, 1020 |
| FatI | CATG | 1 cut(s) | 681 |
| FauI | CCCGC | 5 cut(s) | 115, 152, 422, 560, 565 |
| FblI | GTMKAC | 1 cut(s) | 513 |
| Fnu4HI | GCNGC | 4 cut(s) | 111, 435, 663, 776 |
| FokI | GGATG | 4 cut(s) | 32, 320, 601, 884 |
| Fsp4HI | GCNGC | 4 cut(s) | 111, 435, 663, 776 |
| GlaI | GCGC | 3 cut(s) | 148, 438, 743 |
| GluI | GCNGC | 4 cut(s) | 111, 435, 663, 776 |
| HaeIII | GGCC | 3 cut(s) | 134, 452, 1044 |
| HapII | CCGG | 9 cut(s) | 342, 449, 689, 712, 827, 869, 898, 957, 1004 |
| HgaI | GACGC | 3 cut(s) | 475, 581, 856 |
| HhaI | GCGC | 3 cut(s) | 149, 439, 744 |
| Hin1I | GRCGYC | 1 cut(s) | 573 |
| Hin1II | CATG | 1 cut(s) | 685 |
| Hin6I | GCGC | 3 cut(s) | 147, 437, 742 |
| HinP1I | GCGC | 3 cut(s) | 147, 437, 742 |
| HincII | GTYRAC | 2 cut(s) | 325, 582 |
| HindII | GTYRAC | 2 cut(s) | 325, 582 |
| HinfI | GANTC | 3 cut(s) | 566, 583, 927 |
| HpaII | CCGG | 9 cut(s) | 342, 449, 689, 712, 827, 869, 898, 957, 1004 |
| HphI | GGTGA | 3 cut(s) | 163, 217, 322 |
| Hpy166II | GTNNAC | 5 cut(s) | 307, 325, 514, 582, 879 |
| Hpy188I | TCNGA | 9 cut(s) | 155, 235, 571, 588, 765, 846, 894, 926, 989 |
| Hpy188III | TCNNGA | 3 cut(s) | 649, 809, 869 |
| Hpy8I | GTNNAC | 5 cut(s) | 307, 325, 514, 582, 879 |
| Hpy99I | CGWCG | 4 cut(s) | 128, 446, 575, 850 |
| HpyAV | CCTTC | 7 cut(s) | 37, 223, 511, 592, 666, 760, 986 |
| HpyCH4III | ACNGT | 3 cut(s) | 359, 386, 913 |
| HpyCH4IV | ACGT | 3 cut(s) | 303, 327, 510 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 434, 781 |
| HpyF3I | CTNAG | 2 cut(s) | 372, 1010 |
| HpySE526I | ACGT | 3 cut(s) | 303, 327, 510 |
| Hsp92I | GRCGYC | 1 cut(s) | 573 |
| Hsp92II | CATG | 1 cut(s) | 685 |
| HspAI | GCGC | 3 cut(s) | 147, 437, 742 |
| Kpn2I | TCCGGA | 1 cut(s) | 868 |
| Kzo9I | GATC | 6 cut(s) | 155, 313, 402, 445, 769, 865 |
| LmnI | GCTCC | 1 cut(s) | 832 |
| Lsp1109I | GCAGC | 1 cut(s) | 787 |
| LweI | GCATC | 1 cut(s) | 675 |
| MaeII | ACGT | 3 cut(s) | 303, 327, 510 |
| MaeIII | GTNAC | 3 cut(s) | 328, 746, 821 |
| MalI | GATC | 6 cut(s) | 157, 315, 404, 447, 771, 867 |
| MboI | GATC | 6 cut(s) | 155, 313, 402, 445, 769, 865 |
| MboII | GAAGA | 8 cut(s) | 49, 130, 211, 451, 454, 517, 721, 1009 |
| MflI | RGATCY | 1 cut(s) | 865 |
| MluCI | AATT | 5 cut(s) | 788, 794, 904, 917, 948 |
| MlyI | GAGTC | 3 cut(s) | 575, 577, 936 |
| MmeI | TCCRAC | 3 cut(s) | 258, 594, 869 |
| MroI | TCCGGA | 1 cut(s) | 868 |
| MseI | TTAA | 1 cut(s) | 903 |
| MspA1I | CMGCKG | 1 cut(s) | 778 |
| MspI | CCGG | 9 cut(s) | 342, 449, 689, 712, 827, 869, 898, 957, 1004 |
| Mva1269I | GAATGC | 1 cut(s) | 167 |
| MvaI | CCWGG | 3 cut(s) | 131, 667, 1031 |
| MvnI | CGCG | 4 cut(s) | 147, 354, 437, 742 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 434, 781 |
| NciI | CCSGG | 7 cut(s) | 342, 343, 713, 827, 898, 899, 1005 |
| NdeII | GATC | 6 cut(s) | 155, 313, 402, 445, 769, 865 |
| NlaIII | CATG | 1 cut(s) | 685 |
| NlaIV | GGNNCC | 3 cut(s) | 190, 696, 867 |
| NmeAIII | GCCGAG | 1 cut(s) | 601 |
| NmuCI | GTSAC | 2 cut(s) | 328, 746 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 309, 854 |
| PctI | GAATGC | 1 cut(s) | 167 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 648 |
| PfoI | TCCNGGA | 1 cut(s) | 1003 |
| PkrI | GCNGC | 4 cut(s) | 112, 436, 664, 777 |
| PleI | GAGTC | 3 cut(s) | 574, 577, 935 |
| PpsI | GAGTC | 3 cut(s) | 574, 577, 935 |
| PpuMI | RGGWCCY | 1 cut(s) | 694 |
| Psp5II | RGGWCCY | 1 cut(s) | 694 |
| Psp6I | CCWGG | 3 cut(s) | 129, 665, 1029 |
| PspGI | CCWGG | 3 cut(s) | 129, 665, 1029 |
| PspN4I | GGNNCC | 3 cut(s) | 190, 696, 867 |
| PspPI | GGNCC | 3 cut(s) | 133, 694, 913 |
| PspPPI | RGGWCCY | 1 cut(s) | 694 |
| PstNI | CAGNNNCTG | 2 cut(s) | 648, 778 |
| PsuI | RGATCY | 1 cut(s) | 865 |
| PvuII | CAGCTG | 1 cut(s) | 778 |
| RsaI | GTAC | 6 cut(s) | 21, 482, 608, 659, 677, 880 |
| RsaNI | GTAC | 6 cut(s) | 20, 481, 607, 658, 676, 879 |
| SaqAI | TTAA | 1 cut(s) | 903 |
| SatI | GCNGC | 4 cut(s) | 111, 435, 663, 776 |
| Sau3AI | GATC | 6 cut(s) | 155, 313, 402, 445, 769, 865 |
| Sau96I | GGNCC | 3 cut(s) | 133, 694, 913 |
| ScaI | AGTACT | 1 cut(s) | 482 |
| SchI | GAGTC | 3 cut(s) | 575, 577, 936 |
| SfaNI | GCATC | 1 cut(s) | 675 |
| SinI | GGWCC | 2 cut(s) | 694, 913 |
| SmaI | CCCGGG | 2 cut(s) | 343, 899 |
| Sse9I | AATT | 5 cut(s) | 788, 794, 904, 917, 948 |
| SspI | AATATT | 1 cut(s) | 298 |
| TaaI | ACNGT | 3 cut(s) | 359, 386, 913 |
| TaiI | ACGT | 3 cut(s) | 306, 330, 513 |
| TaqI | TCGA | 6 cut(s) | 123, 441, 621, 638, 702, 857 |
| TasI | AATT | 5 cut(s) | 788, 794, 904, 917, 948 |
| TatI | WGTACW | 1 cut(s) | 480 |
| TauI | GCSGC | 3 cut(s) | 113, 437, 665 |
| Tru1I | TTAA | 1 cut(s) | 903 |
| Tru9I | TTAA | 1 cut(s) | 903 |
| TseFI | GTSAC | 2 cut(s) | 328, 746 |
| TseI | GCWGC | 1 cut(s) | 775 |
| Tsp45I | GTSAC | 2 cut(s) | 328, 746 |
| TspDTI | ATGAA | 3 cut(s) | 132, 352, 607 |
| TspGWI | ACGGA | 1 cut(s) | 310 |
| TspMI | CCCGGG | 2 cut(s) | 341, 897 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 648 |
| VpaK11BI | GGWCC | 2 cut(s) | 694, 913 |
| XapI | RAATTY | 2 cut(s) | 788, 948 |
| XmaI | CCCGGG | 2 cut(s) | 341, 897 |
| XmiI | GTMKAC | 1 cut(s) | 513 |
| ZrmI | AGTACT | 1 cut(s) | 482 |